ZRdb KZFP & Repeats
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LINE_L1MCA_5END

  • Name
    L1MCA_5END
  • Repbase
    L1MCA_5
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000282
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gacttccggtttccggtccggcatgtaaggagcttggaagtcgccactccgtcctaacaacaagtaaaaagctgaacaaactgaaaaatcaacaactcttcttagatccgtcagagaagtgaggtcacagggcaaaccgctgcccccaaaattggagagacagacaggcggatacagagaatcacaacttaccggagcagaaacccacgagcagaaacctccgcgggaaccagtgccggggtaggaaaacctgaactgtaattgacgaattgctggaggctcagtgtggacaagtctgagagttaaaaactccagggggacccagtcataggggggcccccacacttttgtgagttttacctccaggagctcnaccaggttctcacagtgaatatcggagaaaaatcccctcgtgcttccggcagggggaggggaaaaggaaccattttgaaatacgccagagcattctgttcttcttaacaaggcctgccctcaggagaaactatttnaccagagcctaacctgctggggttttatcagagcctaaccgacctgggggaagggaaatacccaactccagcccnctctagccatcctgtcccacctaaggggggaggagaaactgagaagcacttgtgaagttcacagtccagaggcacaggctcactaaaagactgagacctaatcataggactatagaacgcttcccctccccccacaccttaccaccacattactaaaggcctatttacngcagttccttttacccagtacatcatgtccggctntcaanaaaaaattacaaggcatactaaaaggcaaaaaacacagtttgaagagacagagcaagcatcagaaccagactcagatatggcagggatgttggaattatcagaccgggaatttaaaacaactatgattaatatgctaagggctctaatggaaaaagtagacaacatgcaagaacagatgggtaatgtaagcagagagatggaaattctaagaaagaatcaaaaagaaatgctagagatcaaaaacactgtaacagaaatgaagaatgcctttgatgggctcattagtagactggacacggctgaggaaagaatctctgagcttgaggatatgtcaatagaaacttccaaaactgaaaagcaaagagaaaaaagactgaaaaaaaacagaacagaatatccaagaactgtgggacaactacaaaaggtgtaacatacgcgtaatgggaataccagaaggagaagaaagagagaaaggaacagaagaaatatttgaagcaataatgactgagaatttccccnaaattaatgncagacaccaaaccacagatccaggaagctcagagaacaccaagcaggataaatgccaaaaaaaaaacaaancgnanctacacctaggcatatcatattcaaactgcagaaaatcaaagacaaagaaaaaatcttgaaagaagccagagggaaaaaacaccttacctatagaggagcaaagataagaattacatcngacttctcctcagaaaccatgcaagcaagaagagagtggagtgaaatatttaaagtgttgagagaaaaaaaccccaccaacctagaattctgtacccngcgaaattatccttcaaaagtgaaggagaaataaagactttctcagacaaacaaaaattgagggaatttgttgccagtagacctgccttgcaagaaatgttaaaagaagttcttcagagagaaggaaaatgatataggtcagaaactcggatctacataaagaaaggaagagcatcagagaaggaataagtgaaggtaaaataaaaacttttatttttcttattcttaattgatctaacagataacagtttgttcaaaataataatagcaacaatgtattcgattatgtatgcttatgtatatacgtgtgatatatatatatgcttatatatgcttatgtataagtgaaatgaatgacagcaatgatacaagggacgggagggaggaattaggantattttgttattataaggtactcgcactacccgtgaagcggtatagtgttatttgaaagtggacttggattagttgtaaatgtatattgcaaactctagggcaaccactaaaaaaagttaaaaaaaaaaaaagaagtataactgatatgctaagaaaggagagaaaatggaatcatataaaatgctcaattaaaaccacaaaaggcagaaaaagagtggaagacaaaaataggaacaaagaacaagggcaacaaatagaaaacagtaacaaatatggtagatattaatccaactatatcaataatcactttaaacgtcaatggtctaaatacaccaattaaaagacagagattgtcagagtggatcaaaaaacaagacccaactatatgttgtctacaagaaacccactttaaatataaagac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 690 99.0 Highly correlated
2 ZNF558 267 99.0 Highly correlated
3 ZNF317 248 99.0 Highly correlated
4 ZIM3 165 87.0 Moderately correlated
5 ZNF793 102 99.0 Highly correlated
6 ZNF160 101 74.0 Weakly correlated
7 ZNF490 83 43.0 Weakly correlated
8 ZNF680 82 28.9 Weakly correlated
9 ZNF133 80 99.0 Highly correlated
10 ZNF766 77 43.0 Weakly correlated
11 ZNF136 74 74.0 Weakly correlated
12 ZNF679 67 28.9 Weakly correlated
13 ZNF394 55 99.0 Highly correlated
14 ZNF585A 41 99.0 Highly correlated
15 ZNF92 40 28.9 Weakly correlated
16 ZFP37 39 99.0 Highly correlated
17 ZNF723 36 15.2 Weakly correlated
18 ZNF263 33 180.0 Weakly correlated
19 ZNF705B 33 28.9 Weakly correlated
20 ZNF248 31 99.0 Highly correlated
21 ZNF251 29 94.0 Moderately correlated
22 ZNF534 29 19.6 Weakly correlated
23 ZNF705D 29 28.9 Weakly correlated
24 ZNF182 28 99.0 Highly correlated
25 ZNF479 27 6.4 Weakly correlated
26 ZFP28 26 99.0 Highly correlated
27 ZNF101 25 43.0 Weakly correlated
28 ZNF211 23 94.0 Moderately correlated
29 ZNF2 23 99.0 Highly correlated
30 ZNF597 23 94.0 Moderately correlated
31 ZNF18 22 160.0 Weakly correlated
32 ZNF567 22 99.0 Highly correlated
33 ZNF486 21 8.6 Weakly correlated
34 ZNF274 20 99.0 Highly correlated
35 ZNF320 20 28.9 Weakly correlated
36 ZNF506 18 28.9 Weakly correlated
37 ZNF75D 18 94.0 Moderately correlated
38 ZNF589 17 28.9 Weakly correlated
39 ZNF197 16 99.0 Highly correlated
40 ZNF701 16 28.9 Weakly correlated
41 ZNF610 15 28.9 Weakly correlated
42 ZNF287 13 99.0 Highly correlated
43 ZNF337 13 43.0 Weakly correlated
44 ZFP69 12 99.0 Highly correlated
45 ZNF175 12 94.0 Moderately correlated
46 ZKSCAN1 11 160.0 Weakly correlated
47 ZNF879 11 99.0 Highly correlated
48 ZNF584 10 99.0 Highly correlated
49 ZNF140 9 99.0 Highly correlated
50 ZNF26 9 99.0 Highly correlated
51 ZNF441 9 43.0 Weakly correlated
52 ZKSCAN8 8 160.0 Weakly correlated
53 ZNF257 8 0.0 Weakly correlated
54 ZNF324 8 99.0 Highly correlated
55 ZNF547 8 74.0 Weakly correlated
56 ZFP57 7 87.0 Moderately correlated
57 ZFP82 7 99.0 Highly correlated
58 ZFP90 7 99.0 Highly correlated
59 ZNF429 7 28.9 Weakly correlated
60 ZNF454 7 99.0 Highly correlated
61 ZNF485 7 94.0 Moderately correlated
62 ZNF554 7 99.0 Highly correlated
63 ZNF677 7 99.0 Highly correlated
64 ZNF823 7 43.0 Weakly correlated
65 ZFP69B 6 99.0 Highly correlated
66 ZNF585B 6 99.0 Highly correlated
67 ZNF614 6 99.0 Highly correlated
68 ZNF735 6 28.9 Weakly correlated
69 ZNF141 5 43.0 Weakly correlated
70 ZNF468 5 28.9 Weakly correlated
71 ZNF471 5 94.0 Moderately correlated
72 ZNF528 5 43.0 Weakly correlated
73 ZNF674 5 99.0 Highly correlated
74 ZNF786 5 99.0 Highly correlated
75 ZNF169 4 94.0 Moderately correlated
76 ZNF28 4 28.9 Weakly correlated
77 ZNF354A 4 99.0 Highly correlated
78 ZNF440 4 28.9 Weakly correlated
79 ZNF549 4 87.0 Moderately correlated
80 ZNF568 4 99.0 Highly correlated
81 ZNF582 4 99.0 Highly correlated
82 ZNF671 4 94.0 Moderately correlated
83 ZNF84 4 99.0 Highly correlated
84 ZNF878 4 43.0 Weakly correlated
85 ZNF202 3 160.0 Weakly correlated
86 ZNF264 3 99.0 Highly correlated
87 ZNF284 3 43.0 Weakly correlated
88 ZNF43 3 43.0 Weakly correlated
89 ZNF605 3 99.0 Highly correlated
90 ZNF682 3 28.9 Weakly correlated
91 ZNF695 3 28.9 Weakly correlated
92 ZNF808 3 19.6 Weakly correlated
93 ZNF8 3 99.0 Highly correlated
94 ZKSCAN5 2 160.0 Weakly correlated
95 ZNF157 2 99.0 Highly correlated
96 ZNF334 2 99.0 Highly correlated
97 ZNF519 2 19.6 Weakly correlated
98 ZNF525 2 19.6 Weakly correlated
99 ZNF573 2 94.0 Moderately correlated
100 ZNF707 2 74.0 Weakly correlated
101 ZNF780A 2 43.0 Weakly correlated
102 ZNF816 2 28.9 Weakly correlated
103 ZNF85 2 28.9 Weakly correlated
104 PRDM9 1 0.0 Weakly correlated
105 ZNF100 1 28.9 Weakly correlated
106 ZNF10 1 99.0 Highly correlated
107 ZNF124 1 43.0 Weakly correlated
108 ZNF135 1 94.0 Moderately correlated
109 ZNF180 1 99.0 Highly correlated
110 ZNF222 1 43.0 Weakly correlated
111 ZNF225 1 74.0 Weakly correlated
112 ZNF282 1 319.0 Weakly correlated
113 ZNF333 1 99.0 Highly correlated
114 ZNF347 1 43.0 Weakly correlated
115 ZNF350 1 99.0 Highly correlated
116 ZNF383 1 99.0 Highly correlated
117 ZNF418 1 43.0 Weakly correlated
118 ZNF425 1 94.0 Moderately correlated
119 ZNF433 1 43.0 Weakly correlated
120 ZNF44 1 43.0 Weakly correlated
121 ZNF510 1 99.0 Highly correlated
122 ZNF555 1 94.0 Moderately correlated
123 ZNF563 1 28.9 Weakly correlated
124 ZNF641 1 99.0 Highly correlated
125 ZNF727 1 19.6 Weakly correlated
126 ZNF736 1 43.0 Weakly correlated
127 ZNF75A 1 94.0 Moderately correlated
128 ZNF778 1 74.0 Weakly correlated
129 ZNF792 1 94.0 Moderately correlated
130 ZNF81 1 99.0 Highly correlated
131 ZNF850 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF558 120 99.0 Highly correlated
2 ZIM3 105 87.0 Moderately correlated
3 ZNF382 98 99.0 Highly correlated
4 ZNF160 93 74.0 Weakly correlated
5 ZNF317 70 99.0 Highly correlated
6 ZNF490 67 43.0 Weakly correlated
7 ZNF133 63 99.0 Highly correlated
8 ZNF136 57 74.0 Weakly correlated
9 ZNF793 54 99.0 Highly correlated
10 ZNF680 37 28.9 Weakly correlated
11 ZNF248 25 99.0 Highly correlated
12 ZNF723 23 15.2 Weakly correlated
13 ZNF766 22 43.0 Weakly correlated
14 ZNF567 19 99.0 Highly correlated
15 ZNF534 14 19.6 Weakly correlated
16 ZNF585A 13 99.0 Highly correlated
17 ZFP28 13 99.0 Highly correlated
18 ZNF101 13 43.0 Weakly correlated
19 ZNF597 11 94.0 Moderately correlated
20 ZNF211 11 94.0 Moderately correlated
21 ZNF337 11 43.0 Weakly correlated
22 ZNF287 11 99.0 Highly correlated
23 ZNF705D 10 28.9 Weakly correlated
24 ZNF879 10 99.0 Highly correlated
25 ZNF705B 9 28.9 Weakly correlated
26 ZFP69 9 99.0 Highly correlated
27 ZNF479 9 6.4 Weakly correlated
28 ZNF75D 8 94.0 Moderately correlated
29 ZNF251 8 94.0 Moderately correlated
30 ZNF26 8 99.0 Highly correlated
31 ZFP82 7 99.0 Highly correlated
32 ZFP90 7 99.0 Highly correlated
33 ZNF677 7 99.0 Highly correlated
34 ZNF263 7 180.0 Weakly correlated
35 ZNF506 7 28.9 Weakly correlated
36 ZNF701 6 28.9 Weakly correlated
37 ZNF140 6 99.0 Highly correlated
38 ZNF197 5 99.0 Highly correlated
39 ZNF92 5 28.9 Weakly correlated
40 ZNF679 5 28.9 Weakly correlated
41 ZNF735 5 28.9 Weakly correlated
42 ZNF429 4 28.9 Weakly correlated
43 ZNF485 4 94.0 Moderately correlated
44 ZNF549 3 87.0 Moderately correlated
45 ZNF264 3 99.0 Highly correlated
46 ZNF202 3 160.0 Weakly correlated
47 ZNF141 3 43.0 Weakly correlated
48 ZNF589 3 28.9 Weakly correlated
49 ZNF468 3 28.9 Weakly correlated
50 ZNF585B 2 99.0 Highly correlated
51 ZFP37 2 99.0 Highly correlated
52 ZNF584 2 99.0 Highly correlated
53 ZNF454 2 99.0 Highly correlated
54 ZNF84 2 99.0 Highly correlated
55 ZNF28 2 28.9 Weakly correlated
56 ZNF320 2 28.9 Weakly correlated
57 ZNF354A 2 99.0 Highly correlated
58 PRDM9 1 0.0 Weakly correlated
59 ZKSCAN8 1 160.0 Weakly correlated
60 ZNF433 1 43.0 Weakly correlated
61 ZNF175 1 94.0 Moderately correlated
62 ZNF471 1 94.0 Moderately correlated
63 ZNF383 1 99.0 Highly correlated
64 ZNF225 1 74.0 Weakly correlated
65 ZNF18 1 160.0 Weakly correlated
66 ZFP57 1 87.0 Moderately correlated
67 ZNF525 1 19.6 Weakly correlated
68 ZNF641 1 99.0 Highly correlated
69 ZNF674 1 99.0 Highly correlated
70 ZNF169 1 94.0 Moderately correlated
71 ZNF823 1 43.0 Weakly correlated
72 ZNF85 1 28.9 Weakly correlated
73 ZNF695 1 28.9 Weakly correlated
74 ZNF878 1 43.0 Weakly correlated
75 ZNF10 1 99.0 Highly correlated
76 ZNF347 1 43.0 Weakly correlated
77 ZNF440 1 28.9 Weakly correlated
78 ZNF528 1 43.0 Weakly correlated
79 ZNF610 1 28.9 Weakly correlated
80 ZNF707 1 74.0 Weakly correlated
81 ZKSCAN5 1 160.0 Weakly correlated
82 ZNF257 1 0.0 Weakly correlated
83 ZKSCAN1 1 160.0 Weakly correlated
84 ZNF554 1 99.0 Highly correlated
85 ZNF582 1 99.0 Highly correlated
86 ZNF81 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Moderately correlated
2 ZNF136 74.0 Weakly correlated
3 ZNF248 99.0 Highly correlated
4 ZNF251 94.0 Moderately correlated
5 ZNF26 99.0 Highly correlated
6 ZNF287 99.0 Highly correlated
7 ZNF317 99.0 Highly correlated
8 ZNF337 43.0 Weakly correlated
9 ZNF490 43.0 Weakly correlated
10 ZNF506 28.9 Weakly correlated
11 ZNF567 99.0 Highly correlated
12 ZNF597 94.0 Moderately correlated
13 ZNF677 99.0 Highly correlated
14 ZNF680 28.9 Weakly correlated
15 ZNF701 28.9 Weakly correlated
16 ZNF793 99.0 Highly correlated