ZRdb KZFP & Repeats
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LINE_L1MC5_3END

  • Name
    L1MC5_3END
  • Repbase
    L1MC5
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000280
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaatatccctaatatataaagagcttctaaaaatagagaagaaaaagaccaacaaccctatagaaaaatgggctagagatatgaacagacagttcacagaaaaagaaatgcaaatggctcttaancatatgaaaagatgctcaacctcgctcataataagagaaatgcaaattaaaactacactgagataccatttctcacctatcagattggcaaaaatccaaaagtttgacaacatactctgttggcgaggctgtggggaaacaggcactctcatacattgctggtgggaatgcaaaatggtacaacccctatggaggggaatttggcaatatctagcaaaattacatatgcatttaccctttgacccagcaatcccacttctaggaatctatcccaaagatacactggcaaaaatacgaaaagacgtatgcacaaggctattcattgcagcactatttgtaatagcaaaagactggaaacaacccaaatgtccatcaataggggactggttgaataaactatggtacatccacacaatggagtactatgcagctgtaaaaaggaatgaggaatatctctatatactgctatggagtgatctccaggatatattgttaagtgaaaaaagcaaggtggagaaaagtgtgtatagtatgctaccgtttatctaagaaagggggatataaatatatanatatacgtatttgcttatattttaaaaaaaaaacaatggaaggataaaccaaaaattaataaaaatggttacctatagggggagggagggaatagggtggaggggacagggatagaagctagacttctttgaatataccttgttttgtagatttgactttggaaccatgtaaatattttacataattataaaacaaaattaaatttnaaaaagcaatccctaaaaatcgaaagcaaaatgaaacaaatgaacctaactgtgtatcnagttggtggcataaccacacagagaggaactattccaagtgactttaaaacacagtaatttgactgtacatccctagtgggatataccctaaggacaaaaagaactgcaaaaaaatcttaaactgttttcagtaatcatattgttggtggtagtgttggtattgttattctgagactgttgtgtgtgtattgtgggataaagcaaatgagtaattatgttggtgtcgttgagaaccgggattttcggcgtgggagaaaggagatacagatgtaagatcgatgaggttaagtaaaaaccctgtagtcctgaatttgaattggaagtatcagtatgaactcatgatgtattttatctttaaaaaatacatatttcctagctctgtccactgaaaaggcctagaaacaatgaccaacccagtagcaatgagcacccctagcgcccagattgtggtctctaaataccatttcccactaaaaggaaccagggctccttggagaaatggctgattccaggtctggggcaggaaatgtacaagatgagcctggaacatcttgtcataccagaaagcaaggaagctatcaaagactactagggtcgtgtcaaaaggactcaggagccaacttgaagaggctcccactggccaaagatgggacaatttgagcatcaataaggataataactgcaatggattgaaacacatcaaatatgtttaaatccatgagttcataatgatacttaaaaaaaactcattggtcacctttggaggatgctagggaaccaactcattattttgaaaactggtaaataaagggaaagaatcaagcatttatcctgcctttcctatacgaactgtacctcagggtaaccaaatagttgatgaggggaagtttctctttatagaagtattccagctaataaatgaagaaggaatgatagaattagaatatcaccattttgcaacccctaatgaantaatggatctaggcaatgatcatcaatggctgctaacatcacaaaaagagagacaaccagacattatgtgcctcctgatggaagnacacaacaccacctatgaagtagtcttgccaaaaaaatcgaacctgaatctgatcaagcctctagatctaactaccaatttacaggaaatacaggggacagaggaacatgttaaacgacaccacggggatgcaatcagcaaaatccagactgtgggaaactctacaggacaaacgacccggtttcttcaacaaataaattgcaagaaaaaaaagatggagggggaacctatagattaaaagagacttaagagacatatcaaccaatcgcaatgtatggaccttatttggatcctgattcaaacaaacaaactataaaaaaacatttatgagacaatcggggaaatttgaacactgactggatatttgatgatattaaggaattattgttaattttttaggtgtgataatggtattgtggttatgtttttnaaaagagtccttatcttttagagatacatactgaaatatttacggatgaaatgatatgatgtctgggatttgcttcaaaataatccgggagggaggaagtgggtgggggtatagatgaaacaagattggccatgagttgataattgttgaagctgggtgatgggtacatgggggttcattatactattctctctacttttgtatatgtttgaaattttccataataaaaagttaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 487 99.0 Highly correlated
2 ZNF766 179 43.0 Weakly correlated
3 ZNF317 151 99.0 Highly correlated
4 ZNF394 144 99.0 Highly correlated
5 ZNF484 120 99.0 Highly correlated
6 ZNF680 95 28.9 Weakly correlated
7 ZNF263 93 180.0 Weakly correlated
8 ZIM3 92 87.0 Moderately correlated
9 ZNF75D 81 94.0 Moderately correlated
10 ZNF705B 79 28.9 Weakly correlated
11 ZNF605 66 99.0 Highly correlated
12 ZFP37 61 99.0 Highly correlated
13 ZNF2 61 99.0 Highly correlated
14 ZNF101 59 43.0 Weakly correlated
15 ZNF589 59 28.9 Weakly correlated
16 ZNF723 59 15.2 Weakly correlated
17 ZNF175 55 94.0 Moderately correlated
18 ZNF18 54 160.0 Weakly correlated
19 ZNF92 49 28.9 Weakly correlated
20 ZNF679 48 28.9 Weakly correlated
21 ZNF534 43 19.6 Weakly correlated
22 ZNF705D 42 28.9 Weakly correlated
23 ZNF251 41 94.0 Moderately correlated
24 ZKSCAN1 40 160.0 Weakly correlated
25 ZNF324 39 99.0 Highly correlated
26 ZNF486 37 8.6 Weakly correlated
27 ZFP69B 33 99.0 Highly correlated
28 ZNF558 32 99.0 Highly correlated
29 ZNF584 32 99.0 Highly correlated
30 ZNF197 31 99.0 Highly correlated
31 ZNF554 31 99.0 Highly correlated
32 ZKSCAN8 30 160.0 Weakly correlated
33 ZNF479 29 6.4 Weakly correlated
34 ZNF610 29 28.9 Weakly correlated
35 ZNF133 28 99.0 Highly correlated
36 ZNF257 24 0.0 Weakly correlated
37 ZNF320 22 28.9 Weakly correlated
38 ZNF441 21 43.0 Weakly correlated
39 ZNF140 19 99.0 Highly correlated
40 ZNF793 19 99.0 Highly correlated
41 ZNF182 18 99.0 Highly correlated
42 ZNF701 17 28.9 Weakly correlated
43 ZNF506 16 28.9 Weakly correlated
44 ZNF597 16 94.0 Moderately correlated
45 ZNF8 16 99.0 Highly correlated
46 ZNF547 15 74.0 Weakly correlated
47 ZNF28 14 28.9 Weakly correlated
48 ZNF490 14 43.0 Weakly correlated
49 ZNF485 12 94.0 Moderately correlated
50 ZNF707 12 74.0 Weakly correlated
51 ZNF26 11 99.0 Highly correlated
52 ZNF471 10 94.0 Moderately correlated
53 ZNF519 10 19.6 Weakly correlated
54 ZNF528 10 43.0 Weakly correlated
55 ZNF735 10 28.9 Weakly correlated
56 ZNF331 9 94.0 Moderately correlated
57 ZFP57 8 87.0 Moderately correlated
58 ZNF284 8 43.0 Weakly correlated
59 ZNF287 8 99.0 Highly correlated
60 ZNF425 8 94.0 Moderately correlated
61 ZNF585A 8 99.0 Highly correlated
62 ZNF264 7 99.0 Highly correlated
63 ZNF549 7 87.0 Moderately correlated
64 ZNF778 7 74.0 Weakly correlated
65 ZNF792 7 94.0 Moderately correlated
66 ZFP28 6 99.0 Highly correlated
67 ZNF136 6 74.0 Weakly correlated
68 ZNF248 6 99.0 Highly correlated
69 ZNF41 6 99.0 Highly correlated
70 ZNF429 6 28.9 Weakly correlated
71 ZNF682 6 28.9 Weakly correlated
72 ZNF695 6 28.9 Weakly correlated
73 ZNF823 6 43.0 Weakly correlated
74 ZNF84 6 99.0 Highly correlated
75 ZNF169 5 94.0 Moderately correlated
76 ZNF202 5 160.0 Weakly correlated
77 ZNF282 5 319.0 Weakly correlated
78 ZNF33A 5 99.0 Highly correlated
79 ZNF350 5 99.0 Highly correlated
80 ZNF468 5 28.9 Weakly correlated
81 ZNF585B 5 99.0 Highly correlated
82 ZNF786 5 99.0 Highly correlated
83 ZNF878 5 43.0 Weakly correlated
84 ZNF10 4 99.0 Highly correlated
85 ZNF141 4 43.0 Weakly correlated
86 ZNF671 4 94.0 Moderately correlated
87 ZNF674 4 99.0 Highly correlated
88 ZNF879 4 99.0 Highly correlated
89 ZFP30 3 99.0 Highly correlated
90 ZNF135 3 94.0 Moderately correlated
91 ZNF160 3 74.0 Weakly correlated
92 ZNF480 3 43.0 Weakly correlated
93 ZNF583 3 99.0 Highly correlated
94 ZNF641 3 99.0 Highly correlated
95 ZNF677 3 99.0 Highly correlated
96 ZNF716 3 19.6 Weakly correlated
97 ZNF845 3 28.9 Weakly correlated
98 PRDM9 2 0.0 Weakly correlated
99 ZKSCAN5 2 160.0 Weakly correlated
100 ZNF100 2 28.9 Weakly correlated
101 ZNF124 2 43.0 Weakly correlated
102 ZNF12 2 99.0 Highly correlated
103 ZNF214 2 99.0 Highly correlated
104 ZNF224 2 69.0 Weakly correlated
105 ZNF253 2 19.6 Weakly correlated
106 ZNF273 2 28.9 Weakly correlated
107 ZNF274 2 99.0 Highly correlated
108 ZNF30 2 94.0 Moderately correlated
109 ZNF334 2 99.0 Highly correlated
110 ZNF440 2 28.9 Weakly correlated
111 ZNF445 2 99.0 Highly correlated
112 ZNF483 2 99.0 Highly correlated
113 ZNF559 2 74.0 Weakly correlated
114 ZNF573 2 94.0 Moderately correlated
115 ZNF669 2 43.0 Weakly correlated
116 ZNF808 2 19.6 Weakly correlated
117 ZNF816 2 28.9 Weakly correlated
118 ZNF81 2 99.0 Highly correlated
119 ZFP69 1 99.0 Highly correlated
120 ZFP82 1 99.0 Highly correlated
121 ZNF17 1 69.0 Weakly correlated
122 ZNF189 1 99.0 Highly correlated
123 ZNF222 1 43.0 Weakly correlated
124 ZNF223 1 43.0 Weakly correlated
125 ZNF230 1 28.9 Weakly correlated
126 ZNF343 1 74.0 Weakly correlated
127 ZNF347 1 43.0 Weakly correlated
128 ZNF420 1 94.0 Moderately correlated
129 ZNF433 1 43.0 Weakly correlated
130 ZNF436 1 180.0 Weakly correlated
131 ZNF43 1 43.0 Weakly correlated
132 ZNF460 1 74.0 Weakly correlated
133 ZNF529 1 99.0 Highly correlated
134 ZNF543 1 99.0 Highly correlated
135 ZNF557 1 15.2 Weakly correlated
136 ZNF562 1 28.9 Weakly correlated
137 ZNF563 1 28.9 Weakly correlated
138 ZNF567 1 99.0 Highly correlated
139 ZNF568 1 99.0 Highly correlated
140 ZNF582 1 99.0 Highly correlated
141 ZNF586 1 43.0 Weakly correlated
142 ZNF587 1 28.9 Weakly correlated
143 ZNF595 1 43.0 Weakly correlated
144 ZNF611 1 19.6 Weakly correlated
145 ZNF613 1 99.0 Highly correlated
146 ZNF614 1 99.0 Highly correlated
147 ZNF616 1 43.0 Weakly correlated
148 ZNF700 1 28.9 Weakly correlated
149 ZNF730 1 19.6 Weakly correlated
150 ZNF736 1 43.0 Weakly correlated
151 ZNF75A 1 94.0 Moderately correlated
152 ZNF765 1 8.6 Weakly correlated
153 ZNF777 1 319.0 Weakly correlated
154 ZNF780A 1 43.0 Weakly correlated
155 ZNF85 1 28.9 Weakly correlated
156 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF484 116 99.0 Highly correlated
2 ZNF605 63 99.0 Highly correlated
3 ZIM3 45 87.0 Moderately correlated
4 ZNF75D 44 94.0 Moderately correlated
5 ZNF723 36 15.2 Weakly correlated
6 ZNF101 30 43.0 Weakly correlated
7 ZNF382 29 99.0 Highly correlated
8 ZNF534 22 19.6 Weakly correlated
9 ZNF251 21 94.0 Moderately correlated
10 ZNF766 21 43.0 Weakly correlated
11 ZNF140 14 99.0 Highly correlated
12 ZNF680 14 28.9 Weakly correlated
13 ZNF317 13 99.0 Highly correlated
14 ZNF133 13 99.0 Highly correlated
15 ZNF705B 12 28.9 Weakly correlated
16 ZNF263 11 180.0 Weakly correlated
17 ZNF479 9 6.4 Weakly correlated
18 ZNF705D 8 28.9 Weakly correlated
19 ZNF485 7 94.0 Moderately correlated
20 ZNF287 7 99.0 Highly correlated
21 ZNF257 7 0.0 Weakly correlated
22 ZNF701 6 28.9 Weakly correlated
23 ZNF320 6 28.9 Weakly correlated
24 ZNF793 6 99.0 Highly correlated
25 ZNF490 5 43.0 Weakly correlated
26 ZNF735 5 28.9 Weakly correlated
27 ZNF554 5 99.0 Highly correlated
28 ZNF197 4 99.0 Highly correlated
29 ZNF92 4 28.9 Weakly correlated
30 ZNF823 4 43.0 Weakly correlated
31 ZNF589 4 28.9 Weakly correlated
32 ZNF8 4 99.0 Highly correlated
33 ZNF264 4 99.0 Highly correlated
34 ZNF585A 4 99.0 Highly correlated
35 ZNF175 4 94.0 Moderately correlated
36 ZNF394 3 99.0 Highly correlated
37 ZNF695 3 28.9 Weakly correlated
38 ZNF671 3 94.0 Moderately correlated
39 ZNF558 3 99.0 Highly correlated
40 ZNF10 3 99.0 Highly correlated
41 ZNF248 3 99.0 Highly correlated
42 ZNF486 3 8.6 Weakly correlated
43 ZNF18 3 160.0 Weakly correlated
44 ZNF506 3 28.9 Weakly correlated
45 ZNF716 3 19.6 Weakly correlated
46 ZNF610 2 28.9 Weakly correlated
47 ZNF816 2 28.9 Weakly correlated
48 ZKSCAN5 2 160.0 Weakly correlated
49 ZNF136 2 74.0 Weakly correlated
50 ZNF707 2 74.0 Weakly correlated
51 ZNF679 2 28.9 Weakly correlated
52 ZNF792 2 94.0 Moderately correlated
53 ZNF429 2 28.9 Weakly correlated
54 ZNF41 2 99.0 Highly correlated
55 ZNF160 2 74.0 Weakly correlated
56 ZNF81 2 99.0 Highly correlated
57 ZNF471 2 94.0 Moderately correlated
58 ZNF573 2 94.0 Moderately correlated
59 ZNF584 2 99.0 Highly correlated
60 ZFP28 1 99.0 Highly correlated
61 ZNF26 1 99.0 Highly correlated
62 ZFP57 1 87.0 Moderately correlated
63 ZNF765 1 8.6 Weakly correlated
64 ZNF84 1 99.0 Highly correlated
65 ZNF324 1 99.0 Highly correlated
66 ZFP69B 1 99.0 Highly correlated
67 ZNF2 1 99.0 Highly correlated
68 ZKSCAN8 1 160.0 Weakly correlated
69 ZNF585B 1 99.0 Highly correlated
70 ZNF100 1 28.9 Weakly correlated
71 ZNF674 1 99.0 Highly correlated
72 ZNF677 1 99.0 Highly correlated
73 ZNF549 1 87.0 Moderately correlated
74 ZNF273 1 28.9 Weakly correlated
75 ZNF879 1 99.0 Highly correlated
76 ZNF433 1 43.0 Weakly correlated
77 ZNF343 1 74.0 Weakly correlated
78 ZNF182 1 99.0 Highly correlated
79 ZNF141 1 43.0 Weakly correlated
80 ZNF28 1 28.9 Weakly correlated
81 ZNF468 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF251 94.0 Moderately correlated
2 ZNF257 0.0 Weakly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF317 99.0 Highly correlated
5 ZNF382 99.0 Highly correlated
6 ZNF605 99.0 Highly correlated
7 ZNF680 28.9 Weakly correlated
8 ZNF701 28.9 Weakly correlated
9 ZNF705B 28.9 Weakly correlated
10 ZNF75D 94.0 Moderately correlated