ZRdb KZFP & Repeats
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LINE_L1MC5A_3END

  • Name
    L1MC5A_3END
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000281
Description :

pol ORF ends at pos 150
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaatatccctaatatataaagagcttctaaaaattgagaagaaaaagaccaacaacccaatagaaaaatgggcaaaagatatgaacagacagttcacagaaaaagaaatgcaaatggcccttaaacatatgaaaagatgctcaacctcactcataataagagaaatgcaaattaaaactacactgagataccatttctcacctatcagattggcaaaaatccaaaagtttgacaacatactctgttggcgaggctgtggggaaacaggcactctcatacattgctggtgggaatgcaaaatggtacaacccctatggaggggaatttggcaatatctagcaaaattacatatgcatttaccctttgacccagcaatcccacttctaggaatctatcccgaagatacactngcaaaaatacgaaangacgtatgcacaaggttattcattgcagcattatttgtaatagcaaaagactggaaacaacccaaatgtccatcaataggggactggttgaataaactatggtacatccacacaatggagtactatgcagctgtaaaaaggaatgaggaagatctctatatactgntatggagtgatctccaggatatattgttaagtgaaaaaagcaaggtgcagaanagtgtgtatagtatgctaccttttgtgtaagaaagggggatataaatatatanatatacgtatttgcttatattttcaaaaagaaacaatggaaggataaaccaaaaactaataaaaatggttacctatagggggagggagggaacagggtggaggggacagggatggaagcnagacttctctgaatgtaccttgttttatagttttgactttggaaccatgtaaatgttttacataattanaaaacaaaattaaattnaaaaaagcaatccctaaaaatcgaaaacaaantgaaacaaatgaacctaactgtatatcaagttggtggcataaccacacagagaagaattatttcaagtgactttaaaacacagtantttgactgtacatccctagtgggatatattctaaggacaaaaagaaccgcaaagaaatcttaaactncattcagtagtcttattgttagtagtaatattggtattgttattttgaaactattntatgtatattgtaggataaagcaaataagtaattatgttaatgtcgttaggaaccaagattttcagcgtaagagaaaagagatacaaatataaaatcaaagaagttaagtaaaaaccctgtaatnttaaatttgaattggaaatatcagtatgaactcatgatntattttctctttaaaaaatacgtatttcctagctctgtccactgaaaaggcctagaagcaatgacaacccagtagcaatgagcacccctagcgcccagattntggtctctaaataccatttcccactaaaaggaaccagggctccttggagaaatggctgattccaggtctggggcaggaaatgtacaagatgagcctgggacatcttgtcgtgccagaaagcaaggaagctatcaaagactantggggtcgtgtcaaaaggacacaggagccaacttgaaggggctcccactggccaaagatgggacaatttgagcatcaaaaagaataatgactgcaatggattgaaacacatcaaatatatnaaaatccatgagttcataataaaaaaaactcattggtcacctttggaggttgctagggcaccaactcattattctgaaaactggtaaataaagggaaagaatcaagcatttatcctgcctttcctgtacgaactgtatttcagggtaaccaaatagttgatgagggaaagttcttctttatagaagaattccagctaataaatgcagaaggaatgatagaattagaaaatcaccattttgcaacccctaatgaaataatggatctaggcaacgatcatcaatggntgctaaaaccattaggtgaaaggctgatggggaactttataatgganggatcaggctgacancacctgaacccactgatcaatcttagcatcactaaaagtgggacaaccagacattatgtgcctcctgatgtgatgcaataggaagtacacagcaccacctatgaagtattcttgccaaaaaaatcgaacctgaatctaatcaagcctctagatctaactaccagtttacaggaaatacgggggatagaggaacangttaaacgacaccacgaggangcaatcagccaaatccagaatgtggganattctacaggacaaatgacccggtttcttcaacaaataaatggcgagaaaaaaaagagggaaggagaacctatagattaaaagagacttaagagacatancaaccaaatgcaatgtgtggaccttgtttggatcctgattcgaacaaaccaactgtaaaaagacatttttgagacaatcggggaaatttgaacacggactgggtattagatgatattaaggaattattgttaattttgttaggtgtgataatggtattgtggttatgttnnaaaaagtccttatcttttagagatacatactgaagtatttacgggtgaaatgatatgatgtctgggatttgctttaaaatactccaggagggaggaagtaggtgggggtatagatgaaacaagantggcaaaatgttgataattgttgaagctgggtgatgggtacatgggggttcattatactattctctctacttttgtgtatgtttgaaantttccataataaaaagttaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 507 99.0 Highly correlated
2 ZNF394 205 99.0 Highly correlated
3 ZNF317 158 99.0 Highly correlated
4 ZNF766 155 43.0 Weakly correlated
5 ZNF263 118 180.0 Weakly correlated
6 ZFP37 107 99.0 Highly correlated
7 ZNF2 104 99.0 Highly correlated
8 ZNF680 98 28.9 Weakly correlated
9 ZNF605 97 99.0 Highly correlated
10 ZNF18 96 160.0 Weakly correlated
11 ZIM3 95 87.0 Moderately correlated
12 ZNF101 95 43.0 Weakly correlated
13 ZNF175 89 94.0 Moderately correlated
14 ZNF484 86 99.0 Highly correlated
15 ZNF589 84 28.9 Weakly correlated
16 ZNF92 75 28.9 Weakly correlated
17 ZNF705B 74 28.9 Weakly correlated
18 ZNF723 70 15.2 Weakly correlated
19 ZNF324 61 99.0 Highly correlated
20 ZNF534 57 19.6 Weakly correlated
21 ZNF558 56 99.0 Highly correlated
22 ZFP69B 55 99.0 Highly correlated
23 ZNF251 55 94.0 Moderately correlated
24 ZNF705D 52 28.9 Weakly correlated
25 ZNF584 48 99.0 Highly correlated
26 ZNF75D 47 94.0 Moderately correlated
27 ZNF610 45 28.9 Weakly correlated
28 ZKSCAN8 43 160.0 Weakly correlated
29 ZNF679 43 28.9 Weakly correlated
30 ZNF197 38 99.0 Highly correlated
31 ZKSCAN1 37 160.0 Weakly correlated
32 ZNF486 36 8.6 Weakly correlated
33 ZNF479 32 6.4 Weakly correlated
34 ZNF554 30 99.0 Highly correlated
35 ZNF793 30 99.0 Highly correlated
36 ZNF84 28 99.0 Highly correlated
37 ZNF701 26 28.9 Weakly correlated
38 ZNF8 25 99.0 Highly correlated
39 ZNF735 23 28.9 Weakly correlated
40 ZNF320 22 28.9 Weakly correlated
41 ZNF257 20 0.0 Weakly correlated
42 ZNF485 19 94.0 Moderately correlated
43 ZFP57 18 87.0 Moderately correlated
44 ZNF140 18 99.0 Highly correlated
45 ZNF597 18 94.0 Moderately correlated
46 ZNF441 17 43.0 Weakly correlated
47 ZNF133 15 99.0 Highly correlated
48 ZNF28 15 28.9 Weakly correlated
49 ZFP69 14 99.0 Highly correlated
50 ZNF585B 14 99.0 Highly correlated
51 ZNF182 13 99.0 Highly correlated
52 ZNF248 13 99.0 Highly correlated
53 ZNF506 12 28.9 Weakly correlated
54 ZNF641 12 99.0 Highly correlated
55 ZNF778 12 74.0 Weakly correlated
56 ZNF792 12 94.0 Moderately correlated
57 ZFP28 11 99.0 Highly correlated
58 ZNF33A 11 99.0 Highly correlated
59 ZNF425 11 94.0 Moderately correlated
60 ZNF547 11 74.0 Weakly correlated
61 ZNF41 10 99.0 Highly correlated
62 ZNF136 9 74.0 Weakly correlated
63 ZNF284 8 43.0 Weakly correlated
64 ZNF519 8 19.6 Weakly correlated
65 ZNF528 8 43.0 Weakly correlated
66 ZNF169 7 94.0 Moderately correlated
67 ZNF202 7 160.0 Weakly correlated
68 ZNF585A 7 99.0 Highly correlated
69 ZNF677 7 99.0 Highly correlated
70 ZNF707 7 74.0 Weakly correlated
71 ZNF716 7 19.6 Weakly correlated
72 ZNF264 6 99.0 Highly correlated
73 ZNF26 6 99.0 Highly correlated
74 ZNF429 6 28.9 Weakly correlated
75 ZNF490 6 43.0 Weakly correlated
76 ZNF567 6 99.0 Highly correlated
77 ZNF287 5 99.0 Highly correlated
78 ZNF471 5 94.0 Moderately correlated
79 ZNF549 5 87.0 Moderately correlated
80 ZNF695 5 28.9 Weakly correlated
81 ZNF77 5 87.0 Moderately correlated
82 ZNF230 4 28.9 Weakly correlated
83 ZNF334 4 99.0 Highly correlated
84 ZNF350 4 99.0 Highly correlated
85 ZNF43 4 43.0 Weakly correlated
86 ZNF674 4 99.0 Highly correlated
87 ZNF682 4 28.9 Weakly correlated
88 ZNF93 4 8.6 Weakly correlated
89 ZFP14 3 99.0 Highly correlated
90 ZNF273 3 28.9 Weakly correlated
91 ZNF347 3 43.0 Weakly correlated
92 ZNF354A 3 99.0 Highly correlated
93 ZNF433 3 43.0 Weakly correlated
94 ZNF440 3 28.9 Weakly correlated
95 ZNF445 3 99.0 Highly correlated
96 ZNF468 3 28.9 Weakly correlated
97 ZNF583 3 99.0 Highly correlated
98 ZNF671 3 94.0 Moderately correlated
99 ZNF736 3 43.0 Weakly correlated
100 ZNF786 3 99.0 Highly correlated
101 ZNF816 3 28.9 Weakly correlated
102 ZNF823 3 43.0 Weakly correlated
103 ZNF878 3 43.0 Weakly correlated
104 ZKSCAN5 2 160.0 Weakly correlated
105 ZNF141 2 43.0 Weakly correlated
106 ZNF157 2 99.0 Highly correlated
107 ZNF160 2 74.0 Weakly correlated
108 ZNF189 2 99.0 Highly correlated
109 ZNF222 2 43.0 Weakly correlated
110 ZNF418 2 43.0 Weakly correlated
111 ZNF420 2 94.0 Moderately correlated
112 ZNF454 2 99.0 Highly correlated
113 ZNF510 2 99.0 Highly correlated
114 ZNF560 2 43.0 Weakly correlated
115 ZNF568 2 99.0 Highly correlated
116 ZNF573 2 94.0 Moderately correlated
117 ZNF587 2 28.9 Weakly correlated
118 ZNF616 2 43.0 Weakly correlated
119 ZNF675 2 8.6 Weakly correlated
120 ZNF75A 2 94.0 Moderately correlated
121 ZNF780A 2 43.0 Weakly correlated
122 ZNF808 2 19.6 Weakly correlated
123 ZNF845 2 28.9 Weakly correlated
124 ZNF85 2 28.9 Weakly correlated
125 ZNF91 2 6.0 Weakly correlated
126 PRDM9 1 0.0 Weakly correlated
127 ZFP30 1 99.0 Highly correlated
128 ZFP82 1 99.0 Highly correlated
129 ZIK1 1 87.0 Moderately correlated
130 ZKSCAN2 1 180.0 Weakly correlated
131 ZNF10 1 99.0 Highly correlated
132 ZNF124 1 43.0 Weakly correlated
133 ZNF132 1 94.0 Moderately correlated
134 ZNF135 1 94.0 Moderately correlated
135 ZNF154 1 94.0 Moderately correlated
136 ZNF177 1 94.0 Moderately correlated
137 ZNF17 1 69.0 Weakly correlated
138 ZNF184 1 99.0 Highly correlated
139 ZNF225 1 74.0 Weakly correlated
140 ZNF254 1 43.0 Weakly correlated
141 ZNF274 1 99.0 Highly correlated
142 ZNF282 1 319.0 Weakly correlated
143 ZNF304 1 99.0 Highly correlated
144 ZNF30 1 94.0 Moderately correlated
145 ZNF333 1 99.0 Highly correlated
146 ZNF337 1 43.0 Weakly correlated
147 ZNF33B 1 99.0 Highly correlated
148 ZNF343 1 74.0 Weakly correlated
149 ZNF417 1 28.9 Weakly correlated
150 ZNF44 1 43.0 Weakly correlated
151 ZNF480 1 43.0 Weakly correlated
152 ZNF483 1 99.0 Highly correlated
153 ZNF530 1 28.9 Weakly correlated
154 ZNF557 1 15.2 Weakly correlated
155 ZNF559 1 74.0 Weakly correlated
156 ZNF561 1 43.0 Weakly correlated
157 ZNF563 1 28.9 Weakly correlated
158 ZNF565 1 99.0 Highly correlated
159 ZNF571 1 99.0 Highly correlated
160 ZNF586 1 43.0 Weakly correlated
161 ZNF595 1 43.0 Weakly correlated
162 ZNF614 1 99.0 Highly correlated
163 ZNF627 1 74.0 Weakly correlated
164 ZNF667 1 99.0 Highly correlated
165 ZNF669 1 43.0 Weakly correlated
166 ZNF681 1 28.9 Weakly correlated
167 ZNF684 1 99.0 Highly correlated
168 ZNF700 1 28.9 Weakly correlated
169 ZNF727 1 19.6 Weakly correlated
170 ZNF761 1 19.6 Weakly correlated
171 ZNF789 1 99.0 Highly correlated
172 ZNF799 1 43.0 Weakly correlated
173 ZNF81 1 99.0 Highly correlated
174 ZNF850 1 28.9 Weakly correlated
175 ZNF879 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF605 93 99.0 Highly correlated
2 ZNF484 78 99.0 Highly correlated
3 ZNF723 43 15.2 Weakly correlated
4 ZNF101 42 43.0 Weakly correlated
5 ZIM3 42 87.0 Moderately correlated
6 ZNF534 34 19.6 Weakly correlated
7 ZNF75D 28 94.0 Moderately correlated
8 ZNF84 25 99.0 Highly correlated
9 ZNF251 23 94.0 Moderately correlated
10 ZNF680 22 28.9 Weakly correlated
11 ZNF766 21 43.0 Weakly correlated
12 ZNF382 19 99.0 Highly correlated
13 ZNF317 18 99.0 Highly correlated
14 ZNF735 15 28.9 Weakly correlated
15 ZNF705D 14 28.9 Weakly correlated
16 ZNF92 14 28.9 Weakly correlated
17 ZNF263 13 180.0 Weakly correlated
18 ZFP69 13 99.0 Highly correlated
19 ZNF793 12 99.0 Highly correlated
20 ZNF8 11 99.0 Highly correlated
21 ZNF701 10 28.9 Weakly correlated
22 ZNF705B 10 28.9 Weakly correlated
23 ZNF589 10 28.9 Weakly correlated
24 ZNF140 10 99.0 Highly correlated
25 ZNF18 8 160.0 Weakly correlated
26 ZNF485 8 94.0 Moderately correlated
27 ZNF248 6 99.0 Highly correlated
28 ZNF175 6 94.0 Moderately correlated
29 ZNF486 6 8.6 Weakly correlated
30 ZNF506 5 28.9 Weakly correlated
31 ZNF479 5 6.4 Weakly correlated
32 ZNF584 5 99.0 Highly correlated
33 ZFP57 5 87.0 Moderately correlated
34 ZNF677 5 99.0 Highly correlated
35 ZNF264 4 99.0 Highly correlated
36 ZNF792 4 94.0 Moderately correlated
37 ZNF133 4 99.0 Highly correlated
38 ZNF674 4 99.0 Highly correlated
39 ZNF585A 4 99.0 Highly correlated
40 ZNF2 3 99.0 Highly correlated
41 ZNF597 3 94.0 Moderately correlated
42 ZKSCAN8 3 160.0 Weakly correlated
43 ZNF136 3 74.0 Weakly correlated
44 ZNF33A 3 99.0 Highly correlated
45 ZNF28 3 28.9 Weakly correlated
46 ZNF558 3 99.0 Highly correlated
47 ZNF320 3 28.9 Weakly correlated
48 ZNF679 3 28.9 Weakly correlated
49 ZNF394 3 99.0 Highly correlated
50 ZNF257 2 0.0 Weakly correlated
51 ZNF347 2 43.0 Weakly correlated
52 ZNF197 2 99.0 Highly correlated
53 ZNF610 2 28.9 Weakly correlated
54 ZNF528 2 43.0 Weakly correlated
55 ZFP28 2 99.0 Highly correlated
56 ZNF26 2 99.0 Highly correlated
57 ZNF169 2 94.0 Moderately correlated
58 ZNF554 2 99.0 Highly correlated
59 ZNF440 2 28.9 Weakly correlated
60 ZNF716 2 19.6 Weakly correlated
61 ZNF41 2 99.0 Highly correlated
62 ZNF471 2 94.0 Moderately correlated
63 ZNF585B 2 99.0 Highly correlated
64 ZNF287 2 99.0 Highly correlated
65 ZNF573 2 94.0 Moderately correlated
66 ZNF816 1 28.9 Weakly correlated
67 ZNF160 1 74.0 Weakly correlated
68 ZNF182 1 99.0 Highly correlated
69 ZNF671 1 94.0 Moderately correlated
70 ZNF789 1 99.0 Highly correlated
71 ZNF675 1 8.6 Weakly correlated
72 ZNF736 1 43.0 Weakly correlated
73 ZNF684 1 99.0 Highly correlated
74 ZNF490 1 43.0 Weakly correlated
75 ZFP14 1 99.0 Highly correlated
76 ZNF780A 1 43.0 Weakly correlated
77 ZFP37 1 99.0 Highly correlated
78 ZFP82 1 99.0 Highly correlated
79 ZIK1 1 87.0 Moderately correlated
80 ZKSCAN1 1 160.0 Weakly correlated
81 ZKSCAN5 1 160.0 Weakly correlated
82 ZNF10 1 99.0 Highly correlated
83 ZNF141 1 43.0 Weakly correlated
84 ZNF154 1 94.0 Moderately correlated
85 ZNF530 1 28.9 Weakly correlated
86 ZNF565 1 99.0 Highly correlated
87 ZNF567 1 99.0 Highly correlated
88 ZNF44 1 43.0 Weakly correlated
89 ZNF93 1 8.6 Weakly correlated
90 ZNF587 1 28.9 Weakly correlated
91 ZNF778 1 74.0 Weakly correlated
92 ZNF879 1 99.0 Highly correlated
93 ZNF324 1 99.0 Highly correlated
94 ZNF354A 1 99.0 Highly correlated
95 ZNF823 1 43.0 Weakly correlated
96 ZNF468 1 28.9 Weakly correlated
97 ZNF641 1 99.0 Highly correlated
98 ZNF429 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Moderately correlated
2 ZNF248 99.0 Highly correlated
3 ZNF251 94.0 Moderately correlated
4 ZNF263 180.0 Weakly correlated
5 ZNF317 99.0 Highly correlated
6 ZNF486 8.6 Weakly correlated
7 ZNF589 28.9 Weakly correlated
8 ZNF605 99.0 Highly correlated
9 ZNF680 28.9 Weakly correlated
10 ZNF701 28.9 Weakly correlated
11 ZNF705B 28.9 Weakly correlated
12 ZNF75D 94.0 Moderately correlated
13 ZNF793 99.0 Highly correlated
14 ZNF84 99.0 Highly correlated
15 ZNF92 28.9 Weakly correlated