ZRdb KZFP & Repeats
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LINE_L1MC4_3END

  • Name
    L1MC4_3END
  • Repbase
    L1MC4
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000010
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
cttgtatccagaatatataaagaactcttaaaactcaacaataaaaaaacaaacaacccaattaaaaaatgggcaaaagatttgaacagacatttcaccaaagaagatatacagatggcaaataagcacatgaaaagatgctcaacatcattngtcattagggaaatgcaaattaaaaccacaatgagataccactacacacctattagaatggctaaaatcaaaaanactgacaataccaaatgctggcgaggatgtggagcaacnggaactctcatacattgctggtgggaatgcaaaatggtacagccactttggaaaacagtttggcagtttcttanaaagctaaacatacanttaccatatgacccagcaatcncactcctaggtatttacccaagngaantgaaaacntatgtccacacaaaaacctgtacacgaatgtttatagcagctttattcataatngccaaaanctggaaacaaccnagatgtccttcaacaggtgaatggataaacaaactgtggtacatccatacaatggaatactactcagcgataaaaaggaatgaactactgatncacgcaanaacatggatgaatcttaaatgcatnttgctaagtgaaagaagccagncnnaaaaggctacatactgtatgattccatttatatgacattctggaaaaggcaaaactatagagacggaaaacagatcagtggttgccaggggttgggagatgggaagnggggatgactgcaaaggngaagcacaggggattttttagggtgatgaaactattctgtatnaantnntctgtatgatactgtggtggtggatacacgacnctatgcatttgtcaaaacccatagaacttgtnannanccacaganntntacagcacaaagagtgaactttaatgtatgcaaattttaaaaaatcanttaggaggtcgggggatcccaggatggaatgcagactgtgacaaangaatctaactgtattacaaatgnatganacaaccncactgaaggggatgggggaaaaaggngctgacctaagtaactttggaaatgagtggannctgtaaggctaaagacaaaaagaactgtaaacaaacattgaactctagttagtaggtttgtttttcgcagnggtatgggttagcaattctgaaactactttctgtacatnttatacattctaggattgagcaaataagtaaatatattgnggataatgggagccaggtttctcactgtcggagaagggagttacaaatatggaaagggggaaggctagaatgaaccctgtggtgttggattggaattggaggtatcggtatgaactcatggtttttaatatatatgnatatacagacggacagatatagaaatagatatagatatatatgtgtntgtgtatatgtgtatgtatatacgtacatatatttcctagctctgtccgctgagagggcctagaagcaatgacaccccagtagcaatgagcacacctagcgcccagatcttggtttctaaataccattctccactaaaaggaaccagggctccttggagaaatggctgattccagggctggggcagggaaagtacaagatgagcctggaacatcttgttgtgccagaaagtaaggaagtgctcaaagaatgatggggacatgtcaaaaggacacaggagccagcttgaaggggctcccactggccaaatctgggacaatttgagcatcaaaataaataatgatagtaatggattataacccattgaataaaataagaatccatgagtccatactgatataaataaataaataaataaatgggggagaagggaaagctcttccttacagtagaatgccaactaataaatgtagaaggaatgatggaattagaaaaatcaccatttggcaaccatcatagtaataattgattcaggcaagaatcatcaatggatgctaaaactagtgggtgaaagtttgatgaggaacaggatatttacatagtctcaaagtatctccccacaaantacttattaattacaaaggggaaaatagtaactttacagtggagaaacctggcagacaccaccttaaccaagtgatcaaagttaacatcaccagtaatgggacaaatcgacatcatgtgcctcctgatatgatgcactgagaaggacacagcatcacttctgtggtattcctgccaaaaatgcataacctgaatctaatcatgaggaaacatcagacaaacccaaattgagggacattctacaaaataactggcctgtactcttcaaaaatgtcaangtcatgaaagacaaagaaagactgaggaactgttccagattaaaggagactaaagagacatgacaactaaatgcaacgcgtgatcctggattggatcctggaccagannnnnnntttgctataaaggacattattgggacaattggcgaaatttgaatanggtctgtagattagataatagtattgtatcaatgttaatttcctgattttgataattgtactgtggttatgtaagagaatgtccttgttcttaggaaatacacactgaagtatttaggggtaaaggggcatnatgtctgcaacttactctcaaatggttcagaaaaaaaaatatgtatatgcananagagaatgataaagcaaatgtggcaaaatgttaacanttggngaatctgggtgaagggtatacgggagttctttgtactattcttgcaacttttctgtaagtttgaaattatttcaaaataaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 942 99.0 Highly correlated
2 ZNF394 346 99.0 Highly correlated
3 ZNF680 284 28.9 Weakly correlated
4 ZNF766 264 43.0 Weakly correlated
5 ZNF2 256 99.0 Highly correlated
6 ZFP37 232 99.0 Highly correlated
7 ZNF705B 230 28.9 Weakly correlated
8 ZNF605 223 99.0 Highly correlated
9 ZNF263 211 180.0 Weakly correlated
10 ZNF92 210 28.9 Weakly correlated
11 ZNF317 202 99.0 Highly correlated
12 ZIM3 164 87.0 Moderately correlated
13 ZNF18 144 160.0 Weakly correlated
14 ZNF324 143 99.0 Highly correlated
15 ZNF101 140 43.0 Weakly correlated
16 ZNF705D 140 28.9 Weakly correlated
17 ZNF133 132 99.0 Highly correlated
18 ZNF723 132 15.2 Weakly correlated
19 ZFP69B 116 99.0 Highly correlated
20 ZNF175 114 94.0 Moderately correlated
21 ZKSCAN1 106 160.0 Weakly correlated
22 ZNF558 106 99.0 Highly correlated
23 ZNF589 102 28.9 Weakly correlated
24 ZNF610 96 28.9 Weakly correlated
25 ZNF534 94 19.6 Weakly correlated
26 ZNF679 87 28.9 Weakly correlated
27 ZNF8 74 99.0 Highly correlated
28 ZNF641 68 99.0 Highly correlated
29 ZNF707 67 74.0 Weakly correlated
30 ZNF197 58 99.0 Highly correlated
31 ZKSCAN8 57 160.0 Weakly correlated
32 ZNF547 56 74.0 Weakly correlated
33 ZNF584 51 99.0 Highly correlated
34 ZNF140 50 99.0 Highly correlated
35 ZNF251 48 94.0 Moderately correlated
36 ZNF479 47 6.4 Weakly correlated
37 ZNF202 44 160.0 Weakly correlated
38 ZNF585B 41 99.0 Highly correlated
39 ZNF257 38 0.0 Weakly correlated
40 ZNF792 38 94.0 Moderately correlated
41 ZNF554 37 99.0 Highly correlated
42 ZNF701 36 28.9 Weakly correlated
43 ZNF485 34 94.0 Moderately correlated
44 ZNF793 34 99.0 Highly correlated
45 ZNF486 33 8.6 Weakly correlated
46 ZNF75D 33 94.0 Moderately correlated
47 ZNF441 32 43.0 Weakly correlated
48 ZNF597 30 94.0 Moderately correlated
49 ZFP57 28 87.0 Moderately correlated
50 ZNF287 28 99.0 Highly correlated
51 ZNF735 28 28.9 Weakly correlated
52 ZNF182 27 99.0 Highly correlated
53 ZNF264 27 99.0 Highly correlated
54 ZNF506 26 28.9 Weakly correlated
55 ZNF490 25 43.0 Weakly correlated
56 ZNF528 25 43.0 Weakly correlated
57 ZNF26 24 99.0 Highly correlated
58 ZNF320 24 28.9 Weakly correlated
59 ZFP28 22 99.0 Highly correlated
60 ZNF585A 20 99.0 Highly correlated
61 ZNF695 20 28.9 Weakly correlated
62 ZNF823 19 43.0 Weakly correlated
63 ZNF91 19 6.0 Weakly correlated
64 ZNF28 17 28.9 Weakly correlated
65 ZNF248 16 99.0 Highly correlated
66 ZNF274 15 99.0 Highly correlated
67 ZNF284 15 43.0 Weakly correlated
68 ZNF354C 15 99.0 Highly correlated
69 ZNF677 15 99.0 Highly correlated
70 ZNF169 13 94.0 Moderately correlated
71 ZNF425 13 94.0 Moderately correlated
72 ZNF136 12 74.0 Weakly correlated
73 ZNF273 12 28.9 Weakly correlated
74 ZNF331 12 94.0 Moderately correlated
75 ZNF519 12 19.6 Weakly correlated
76 ZNF549 12 87.0 Moderately correlated
77 ZNF671 11 94.0 Moderately correlated
78 ZNF41 10 99.0 Highly correlated
79 ZNF471 10 94.0 Moderately correlated
80 ZNF84 10 99.0 Highly correlated
81 ZFP30 9 99.0 Highly correlated
82 ZNF334 9 99.0 Highly correlated
83 ZFP69 8 99.0 Highly correlated
84 ZNF347 8 43.0 Weakly correlated
85 ZNF440 8 28.9 Weakly correlated
86 ZNF567 8 99.0 Highly correlated
87 ZNF816 8 28.9 Weakly correlated
88 ZNF879 8 99.0 Highly correlated
89 ZNF17 7 69.0 Weakly correlated
90 ZNF468 7 28.9 Weakly correlated
91 ZNF487 7 28.9 Weakly correlated
92 ZNF559 7 74.0 Weakly correlated
93 ZNF658 7 99.0 Highly correlated
94 ZNF674 7 99.0 Highly correlated
95 ZNF878 7 43.0 Weakly correlated
96 ZNF93 7 8.6 Weakly correlated
97 ZNF160 6 74.0 Weakly correlated
98 ZNF189 6 99.0 Highly correlated
99 ZNF30 6 94.0 Moderately correlated
100 ZNF33A 6 99.0 Highly correlated
101 ZNF350 6 99.0 Highly correlated
102 ZNF433 6 43.0 Weakly correlated
103 ZNF682 6 28.9 Weakly correlated
104 ZNF716 6 19.6 Weakly correlated
105 ZNF778 6 74.0 Weakly correlated
106 ZNF786 6 99.0 Highly correlated
107 ZKSCAN5 5 160.0 Weakly correlated
108 ZNF211 5 94.0 Moderately correlated
109 ZNF222 5 43.0 Weakly correlated
110 ZNF337 5 43.0 Weakly correlated
111 ZNF429 5 28.9 Weakly correlated
112 ZNF730 5 19.6 Weakly correlated
113 ZNF799 5 43.0 Weakly correlated
114 ZNF808 5 19.6 Weakly correlated
115 ZNF135 4 94.0 Moderately correlated
116 ZNF141 4 43.0 Weakly correlated
117 ZNF230 4 28.9 Weakly correlated
118 ZNF253 4 19.6 Weakly correlated
119 ZNF282 4 319.0 Weakly correlated
120 ZNF286A 4 160.0 Weakly correlated
121 ZNF354A 4 99.0 Highly correlated
122 ZNF436 4 180.0 Weakly correlated
123 ZNF544 4 0.0 Weakly correlated
124 ZNF563 4 28.9 Weakly correlated
125 ZNF573 4 94.0 Moderately correlated
126 ZNF583 4 99.0 Highly correlated
127 ZNF607 4 43.0 Weakly correlated
128 ZNF780A 4 43.0 Weakly correlated
129 ZNF81 4 99.0 Highly correlated
130 ZFP90 3 99.0 Highly correlated
131 ZKSCAN2 3 180.0 Weakly correlated
132 ZNF283 3 99.0 Highly correlated
133 ZNF418 3 43.0 Weakly correlated
134 ZNF420 3 94.0 Moderately correlated
135 ZNF44 3 43.0 Weakly correlated
136 ZNF560 3 43.0 Weakly correlated
137 ZNF568 3 99.0 Highly correlated
138 ZNF627 3 74.0 Weakly correlated
139 ZNF689 3 99.0 Highly correlated
140 ZNF727 3 19.6 Weakly correlated
141 ZNF75A 3 94.0 Moderately correlated
142 ZNF777 3 319.0 Weakly correlated
143 ZNF77 3 87.0 Moderately correlated
144 ZKSCAN4 2 99.0 Highly correlated
145 ZNF100 2 28.9 Weakly correlated
146 ZNF157 2 99.0 Highly correlated
147 ZNF20 2 43.0 Weakly correlated
148 ZNF224 2 69.0 Weakly correlated
149 ZNF233 2 99.0 Highly correlated
150 ZNF234 2 99.0 Highly correlated
151 ZNF250 2 99.0 Highly correlated
152 ZNF343 2 74.0 Weakly correlated
153 ZNF43 2 43.0 Weakly correlated
154 ZNF445 2 99.0 Highly correlated
155 ZNF460 2 74.0 Weakly correlated
156 ZNF510 2 99.0 Highly correlated
157 ZNF555 2 94.0 Moderately correlated
158 ZNF557 2 15.2 Weakly correlated
159 ZNF565 2 99.0 Highly correlated
160 ZNF578 2 15.2 Weakly correlated
161 ZNF586 2 43.0 Weakly correlated
162 ZNF611 2 19.6 Weakly correlated
163 ZNF616 2 43.0 Weakly correlated
164 ZNF669 2 43.0 Weakly correlated
165 ZNF675 2 8.6 Weakly correlated
166 ZNF684 2 99.0 Highly correlated
167 ZNF700 2 28.9 Weakly correlated
168 ZNF736 2 43.0 Weakly correlated
169 ZNF772 2 94.0 Moderately correlated
170 ZNF789 2 99.0 Highly correlated
171 ZNF846 2 74.0 Weakly correlated
172 ZNF85 2 28.9 Weakly correlated
173 PRDM9 1 0.0 Weakly correlated
174 RBAK 1 99.0 Highly correlated
175 ZFP1 1 99.0 Highly correlated
176 ZFP82 1 99.0 Highly correlated
177 ZIM2 1 0.0 Weakly correlated
178 ZNF124 1 43.0 Weakly correlated
179 ZNF12 1 99.0 Highly correlated
180 ZNF14 1 69.0 Weakly correlated
181 ZNF177 1 94.0 Moderately correlated
182 ZNF184 1 99.0 Highly correlated
183 ZNF195 1 28.9 Weakly correlated
184 ZNF19 1 99.0 Highly correlated
185 ZNF225 1 74.0 Weakly correlated
186 ZNF226 1 99.0 Highly correlated
187 ZNF256 1 74.0 Weakly correlated
188 ZNF268 1 94.0 Moderately correlated
189 ZNF333 1 99.0 Highly correlated
190 ZNF417 1 28.9 Weakly correlated
191 ZNF419 1 28.9 Weakly correlated
192 ZNF432 1 99.0 Highly correlated
193 ZNF454 1 99.0 Highly correlated
194 ZNF461 1 99.0 Highly correlated
195 ZNF480 1 43.0 Weakly correlated
196 ZNF483 1 99.0 Highly correlated
197 ZNF484 1 99.0 Highly correlated
198 ZNF500 1 160.0 Weakly correlated
199 ZNF514 1 94.0 Moderately correlated
200 ZNF529 1 99.0 Highly correlated
201 ZNF530 1 28.9 Weakly correlated
202 ZNF540 1 87.0 Moderately correlated
203 ZNF543 1 99.0 Highly correlated
204 ZNF551 1 94.0 Moderately correlated
205 ZNF556 1 94.0 Moderately correlated
206 ZNF561 1 43.0 Weakly correlated
207 ZNF564 1 74.0 Weakly correlated
208 ZNF569 1 99.0 Highly correlated
209 ZNF577 1 94.0 Moderately correlated
210 ZNF587B 1 8.6 Weakly correlated
211 ZNF596 1 94.0 Moderately correlated
212 ZNF613 1 99.0 Highly correlated
213 ZNF624 1 99.0 Highly correlated
214 ZNF66 1 0.0 Weakly correlated
215 ZNF699 1 99.0 Highly correlated
216 ZNF705E 1 0.0 Weakly correlated
217 ZNF709 1 87.0 Moderately correlated
218 ZNF717 1 0.0 Weakly correlated
219 ZNF718 1 19.6 Weakly correlated
220 ZNF726 1 28.9 Weakly correlated
221 ZNF728 1 19.6 Weakly correlated
222 ZNF747 1 43.0 Weakly correlated
223 ZNF749 1 28.9 Weakly correlated
224 ZNF761 1 19.6 Weakly correlated
225 ZNF763 1 15.2 Weakly correlated
226 ZNF765 1 8.6 Weakly correlated
227 ZNF776 1 43.0 Weakly correlated
228 ZNF805 1 99.0 Highly correlated
229 ZNF813 1 28.9 Weakly correlated
230 ZNF814 1 0.0 Weakly correlated
231 ZNF829 1 99.0 Highly correlated
232 ZNF845 1 28.9 Weakly correlated
233 ZNF850 1 28.9 Weakly correlated
234 ZNF852 1 94.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF605 203 99.0 Highly correlated
2 ZNF133 85 99.0 Highly correlated
3 ZNF680 78 28.9 Weakly correlated
4 ZNF723 78 15.2 Weakly correlated
5 ZNF705B 72 28.9 Weakly correlated
6 ZIM3 65 87.0 Moderately correlated
7 ZNF101 62 43.0 Weakly correlated
8 ZNF382 55 99.0 Highly correlated
9 ZNF705D 52 28.9 Weakly correlated
10 ZNF534 47 19.6 Weakly correlated
11 ZNF641 42 99.0 Highly correlated
12 ZNF766 32 43.0 Weakly correlated
13 ZNF263 27 180.0 Weakly correlated
14 ZNF140 21 99.0 Highly correlated
15 ZNF2 20 99.0 Highly correlated
16 ZNF485 19 94.0 Moderately correlated
17 ZNF558 18 99.0 Highly correlated
18 ZNF317 17 99.0 Highly correlated
19 ZNF287 17 99.0 Highly correlated
20 ZNF251 16 94.0 Moderately correlated
21 ZNF264 13 99.0 Highly correlated
22 ZNF75D 13 94.0 Moderately correlated
23 ZNF479 13 6.4 Weakly correlated
24 ZNF589 12 28.9 Weakly correlated
25 ZNF92 12 28.9 Weakly correlated
26 ZNF792 12 94.0 Moderately correlated
27 ZNF735 12 28.9 Weakly correlated
28 ZNF585A 10 99.0 Highly correlated
29 ZNF26 10 99.0 Highly correlated
30 ZNF701 10 28.9 Weakly correlated
31 ZNF257 10 0.0 Weakly correlated
32 ZNF175 10 94.0 Moderately correlated
33 ZNF248 10 99.0 Highly correlated
34 ZNF8 9 99.0 Highly correlated
35 ZNF202 8 160.0 Weakly correlated
36 ZNF324 8 99.0 Highly correlated
37 ZNF490 8 43.0 Weakly correlated
38 ZNF695 8 28.9 Weakly correlated
39 ZNF793 8 99.0 Highly correlated
40 ZNF823 8 43.0 Weakly correlated
41 ZNF610 8 28.9 Weakly correlated
42 ZFP28 7 99.0 Highly correlated
43 ZNF677 7 99.0 Highly correlated
44 ZNF28 7 28.9 Weakly correlated
45 ZFP69 6 99.0 Highly correlated
46 ZNF136 6 74.0 Weakly correlated
47 ZNF320 6 28.9 Weakly correlated
48 ZNF506 6 28.9 Weakly correlated
49 ZNF679 6 28.9 Weakly correlated
50 ZNF197 6 99.0 Highly correlated
51 ZKSCAN1 5 160.0 Weakly correlated
52 ZNF84 5 99.0 Highly correlated
53 ZNF528 5 43.0 Weakly correlated
54 ZNF671 5 94.0 Moderately correlated
55 ZNF816 5 28.9 Weakly correlated
56 ZFP37 4 99.0 Highly correlated
57 ZNF394 4 99.0 Highly correlated
58 ZNF674 4 99.0 Highly correlated
59 ZNF331 4 94.0 Moderately correlated
60 ZNF549 4 87.0 Moderately correlated
61 ZNF440 4 28.9 Weakly correlated
62 ZNF18 4 160.0 Weakly correlated
63 ZNF347 4 43.0 Weakly correlated
64 ZNF597 4 94.0 Moderately correlated
65 ZNF707 4 74.0 Weakly correlated
66 ZFP57 3 87.0 Moderately correlated
67 ZKSCAN8 3 160.0 Weakly correlated
68 ZNF81 3 99.0 Highly correlated
69 ZNF716 3 19.6 Weakly correlated
70 ZNF780A 3 43.0 Weakly correlated
71 ZNF41 3 99.0 Highly correlated
72 ZNF486 3 8.6 Weakly correlated
73 ZNF584 3 99.0 Highly correlated
74 ZNF567 3 99.0 Highly correlated
75 ZFP69B 2 99.0 Highly correlated
76 ZFP90 2 99.0 Highly correlated
77 ZNF141 2 43.0 Weakly correlated
78 ZNF169 2 94.0 Moderately correlated
79 ZNF350 2 99.0 Highly correlated
80 ZNF433 2 43.0 Weakly correlated
81 ZNF471 2 94.0 Moderately correlated
82 ZNF879 2 99.0 Highly correlated
83 ZNF189 2 99.0 Highly correlated
84 ZNF273 2 28.9 Weakly correlated
85 ZNF565 2 99.0 Highly correlated
86 ZNF211 2 94.0 Moderately correlated
87 ZNF468 2 28.9 Weakly correlated
88 ZNF684 2 99.0 Highly correlated
89 ZNF429 2 28.9 Weakly correlated
90 ZNF554 2 99.0 Highly correlated
91 ZNF182 2 99.0 Highly correlated
92 ZNF585B 2 99.0 Highly correlated
93 ZFP1 1 99.0 Highly correlated
94 ZNF17 1 69.0 Weakly correlated
95 ZNF354C 1 99.0 Highly correlated
96 ZNF669 1 43.0 Weakly correlated
97 ZNF749 1 28.9 Weakly correlated
98 ZNF789 1 99.0 Highly correlated
99 ZNF354A 1 99.0 Highly correlated
100 ZNF616 1 43.0 Weakly correlated
101 ZNF283 1 99.0 Highly correlated
102 ZNF436 1 180.0 Weakly correlated
103 ZNF555 1 94.0 Moderately correlated
104 ZNF160 1 74.0 Weakly correlated
105 ZNF417 1 28.9 Weakly correlated
106 ZNF484 1 99.0 Highly correlated
107 ZNF33A 1 99.0 Highly correlated
108 ZNF425 1 94.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF136 74.0 Weakly correlated
2 ZNF175 94.0 Moderately correlated
3 ZNF197 99.0 Highly correlated
4 ZNF248 99.0 Highly correlated
5 ZNF251 94.0 Moderately correlated
6 ZNF257 0.0 Weakly correlated
7 ZNF263 180.0 Weakly correlated
8 ZNF28 28.9 Weakly correlated
9 ZNF317 99.0 Highly correlated
10 ZNF320 28.9 Weakly correlated
11 ZNF506 28.9 Weakly correlated
12 ZNF558 99.0 Highly correlated
13 ZNF589 28.9 Weakly correlated
14 ZNF605 99.0 Highly correlated
15 ZNF610 28.9 Weakly correlated
16 ZNF680 28.9 Weakly correlated
17 ZNF695 28.9 Weakly correlated
18 ZNF701 28.9 Weakly correlated
19 ZNF723 15.2 Weakly correlated
20 ZNF75D 94.0 Moderately correlated
21 ZNF766 43.0 Weakly correlated
22 ZNF92 28.9 Weakly correlated