ZRdb KZFP & Repeats
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LINE_L1MC4A_3END

  • Name
    L1MC4A_3END
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000279
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccctaatatataaagaactcttaaaantngaaagnaaaagaccaaaaacccgatagaaaaatgggcaaaagacatgaacagacaattcacaaaaaganatanaaatggcccttaaacatatgaaaagatgttcaacctcactcataataagagaaatgcaaattaaaactacactgagataccatttctcacctatcagattggcaaaaattcaaaagtttgacaacacactctgttggcgaggctgtggggaaacaggcactctcatacattgctggtgggaatgcaaantggtacaacccttntggaggggaatttggcaatatctaacaaaactacatatgcatttaccctttgacccagcaatcccacttctaggaatttaccctgaagatacacctccaacatgtacaaaatnacatatgcacaaggttattcattgcagcattgtttgtaattgcaaaatattggaaacaacctaaatgcccatnnataggagantggttgaataaactatggtacatccacacaatggagtactatgcagctgtaaaaaagaatgaggaagatctctatgaactgatatggagtgatttccaggatatattgttaagtgaaaaaagcaaagtgcaaaagagtatntatagtatgctacctttcgtgtaagaaagaagggaaaataagaaaatatacatgtatctgctcatttgtgcaaaaagaaacacaggaaggataaaccagaaactaatgagattggttacctacagggggtgggtgggaatggggagaaagaatgggggatgggaacgggatggnagggatgaggagggagtgacacttctctgagtatacctttttgtatagttctgacttttagaaccatgntaatgtttcacatacctcaaaaataaataattaaaatcaaccaggatgtggggggaacccaaaatggaatacaaacagnaacaaatgaacctaactgtattncaaatgaataacataaccacactgaaggggatggggaagaaaagaactaacctaagtaactttggaaaacagtattttgactgnatactgtaaggctaaagacaaaaagaactgtacacaaatactgtactctagttagtaaatttgtttctcacaggggtatgggttagcaattctgaaactactttatgtgtatnctaggattgaacaaataagtaaatatattgtagataatgagagccaggtttctcactgtcggagaaagaagttacaaataaggaaagggggaaggctagaatgaaccctgtggtgttggattggaatcggaggtatcagtatgaactcatggtttttaacatatatacagatagatagatacagaaataagatatagatgtatgtgtatgcatgggttagtatacatacatatatttcctagctctgtccgctgagagggcctagaagcaatgacaccccagtagcaatgagcacacctagcgcccagatcttggtttctaaataccattctccaataaaaggaaccagggctccttggagaaatggctgattccagggctggggcagggaaaatacaagatgagcctggaacatcttgtggtgccagaaagtaaggaagtgctcaaaaaangatgggggcatgtcaaaaggacacaggagccaacctgaaggagctcccaatggccaaanctggaacaatttgagcaacaaaataaataatgatagtantggattataacccatagaataaaataaatatccatgagtccatactgatataaataaataattgaataaataaataaatgggggagaagggacagctcttccttacagnagaattccaattaataaatgtagaaggaatganggaaatagaaaatcaccattaggcaaacaccacagtaataattgttgcaggcaagatccaccgatggatgctaaaattagtgggcgaaagtttgaggagaaacaggatatttgcatagtctcaaagtatctcccccaagatatttattaattacaaagggaaaaatagtaactttacagtggagaaacccggcagacaccaccttaaccaagtgatcaaggttaacatcaccagtaataagacatatcgacatcatgtaccccctgatatgatgcactgagaagggcacaacatcacttctgtggtattcttgccaaaaatgcataacctcaatctaatcatgagaaaacatcagacaaacccaaattgagggacattctacaaaataactgaccagtactcttcaaaagtgtcaaggtcatgaaagacaaggaaagactgaggaactgtcacagattggaggagactaaggagacatgacaactaaatgcaatgtgggatcctggattggatcctggaacagaaaaaaggacattagtggaaaaactggtgaaattcgaataaggtctgtagtttagttaatagtattgtaccaatgttaatttcctggttttgataattgtactatggttatgtaagatgttaacattaggggaagctgggtgaagggtatacgggaactctctgtactatttttgcaacttttctgtaagtctaaaattatttcaaaataaaaagttaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 368 99.0 Highly correlated
2 ZNF605 116 99.0 Highly correlated
3 ZNF680 111 28.9 Weakly correlated
4 ZNF766 102 43.0 Weakly correlated
5 ZNF394 100 99.0 Highly correlated
6 ZNF92 96 28.9 Weakly correlated
7 ZNF317 92 99.0 Highly correlated
8 ZNF263 74 180.0 Weakly correlated
9 ZIM3 68 87.0 Moderately correlated
10 ZNF705B 53 28.9 Weakly correlated
11 ZFP37 52 99.0 Highly correlated
12 ZNF251 48 94.0 Moderately correlated
13 ZNF679 48 28.9 Weakly correlated
14 ZNF18 47 160.0 Weakly correlated
15 ZNF2 47 99.0 Highly correlated
16 ZNF175 44 94.0 Moderately correlated
17 ZNF723 44 15.2 Weakly correlated
18 ZNF101 41 43.0 Weakly correlated
19 ZNF486 40 8.6 Weakly correlated
20 ZNF589 38 28.9 Weakly correlated
21 ZNF705D 34 28.9 Weakly correlated
22 ZNF584 33 99.0 Highly correlated
23 ZNF8 30 99.0 Highly correlated
24 ZKSCAN8 28 160.0 Weakly correlated
25 ZNF534 28 19.6 Weakly correlated
26 ZFP69B 27 99.0 Highly correlated
27 ZKSCAN1 27 160.0 Weakly correlated
28 ZNF197 25 99.0 Highly correlated
29 ZNF558 25 99.0 Highly correlated
30 ZNF320 24 28.9 Weakly correlated
31 ZNF485 24 94.0 Moderately correlated
32 ZNF479 21 6.4 Weakly correlated
33 ZNF554 20 99.0 Highly correlated
34 ZFP57 19 87.0 Moderately correlated
35 ZNF610 19 28.9 Weakly correlated
36 ZNF793 19 99.0 Highly correlated
37 ZNF257 18 0.0 Weakly correlated
38 ZNF324 17 99.0 Highly correlated
39 ZNF274 15 99.0 Highly correlated
40 ZNF701 15 28.9 Weakly correlated
41 ZNF75D 15 94.0 Moderately correlated
42 ZNF84 15 99.0 Highly correlated
43 ZNF28 14 28.9 Weakly correlated
44 ZNF529 14 99.0 Highly correlated
45 ZNF133 13 99.0 Highly correlated
46 ZNF182 13 99.0 Highly correlated
47 ZNF506 13 28.9 Weakly correlated
48 ZNF597 13 94.0 Moderately correlated
49 ZNF140 12 99.0 Highly correlated
50 ZNF528 12 43.0 Weakly correlated
51 ZNF429 11 28.9 Weakly correlated
52 ZNF441 11 43.0 Weakly correlated
53 ZNF695 10 28.9 Weakly correlated
54 ZFP28 9 99.0 Highly correlated
55 ZNF26 9 99.0 Highly correlated
56 ZFP69 8 99.0 Highly correlated
57 ZNF547 8 74.0 Weakly correlated
58 ZNF549 8 87.0 Moderately correlated
59 ZNF136 7 74.0 Weakly correlated
60 ZNF284 7 43.0 Weakly correlated
61 ZNF823 7 43.0 Weakly correlated
62 ZNF169 6 94.0 Moderately correlated
63 ZNF248 6 99.0 Highly correlated
64 ZNF331 6 94.0 Moderately correlated
65 ZNF490 6 43.0 Weakly correlated
66 ZNF563 6 28.9 Weakly correlated
67 ZNF583 6 99.0 Highly correlated
68 ZNF585A 6 99.0 Highly correlated
69 ZNF224 5 69.0 Weakly correlated
70 ZNF425 5 94.0 Moderately correlated
71 ZNF641 5 99.0 Highly correlated
72 ZNF879 5 99.0 Highly correlated
73 ZNF44 4 43.0 Weakly correlated
74 ZNF471 4 94.0 Moderately correlated
75 ZNF677 4 99.0 Highly correlated
76 ZNF735 4 28.9 Weakly correlated
77 ZNF808 4 19.6 Weakly correlated
78 ZNF141 3 43.0 Weakly correlated
79 ZNF202 3 160.0 Weakly correlated
80 ZNF230 3 28.9 Weakly correlated
81 ZNF264 3 99.0 Highly correlated
82 ZNF273 3 28.9 Weakly correlated
83 ZNF287 3 99.0 Highly correlated
84 ZNF347 3 43.0 Weakly correlated
85 ZNF433 3 43.0 Weakly correlated
86 ZNF445 3 99.0 Highly correlated
87 ZNF510 3 99.0 Highly correlated
88 ZNF573 3 94.0 Moderately correlated
89 ZNF674 3 99.0 Highly correlated
90 ZNF682 3 28.9 Weakly correlated
91 ZNF707 3 74.0 Weakly correlated
92 ZFP14 2 99.0 Highly correlated
93 ZFP30 2 99.0 Highly correlated
94 ZIK1 2 87.0 Moderately correlated
95 ZNF10 2 99.0 Highly correlated
96 ZNF12 2 99.0 Highly correlated
97 ZNF157 2 99.0 Highly correlated
98 ZNF160 2 74.0 Weakly correlated
99 ZNF334 2 99.0 Highly correlated
100 ZNF33A 2 99.0 Highly correlated
101 ZNF41 2 99.0 Highly correlated
102 ZNF440 2 28.9 Weakly correlated
103 ZNF468 2 28.9 Weakly correlated
104 ZNF519 2 19.6 Weakly correlated
105 ZNF567 2 99.0 Highly correlated
106 ZNF582 2 99.0 Highly correlated
107 ZNF585B 2 99.0 Highly correlated
108 ZNF671 2 94.0 Moderately correlated
109 ZNF700 2 28.9 Weakly correlated
110 ZNF816 2 28.9 Weakly correlated
111 ZNF845 2 28.9 Weakly correlated
112 ZFP82 1 99.0 Highly correlated
113 ZKSCAN5 1 160.0 Weakly correlated
114 ZNF100 1 28.9 Weakly correlated
115 ZNF17 1 69.0 Weakly correlated
116 ZNF189 1 99.0 Highly correlated
117 ZNF225 1 74.0 Weakly correlated
118 ZNF282 1 319.0 Weakly correlated
119 ZNF337 1 43.0 Weakly correlated
120 ZNF354A 1 99.0 Highly correlated
121 ZNF675 1 8.6 Weakly correlated
122 ZNF705E 1 0.0 Weakly correlated
123 ZNF716 1 19.6 Weakly correlated
124 ZNF730 1 19.6 Weakly correlated
125 ZNF736 1 43.0 Weakly correlated
126 ZNF778 1 74.0 Weakly correlated
127 ZNF77 1 87.0 Moderately correlated
128 ZNF786 1 99.0 Highly correlated
129 ZNF792 1 94.0 Moderately correlated
130 ZNF799 1 43.0 Weakly correlated
131 ZNF81 1 99.0 Highly correlated
132 ZNF878 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF605 108 99.0 Highly correlated
2 ZIM3 38 87.0 Moderately correlated
3 ZNF680 30 28.9 Weakly correlated
4 ZNF251 28 94.0 Moderately correlated
5 ZNF382 23 99.0 Highly correlated
6 ZNF486 20 8.6 Weakly correlated
7 ZNF8 20 99.0 Highly correlated
8 ZNF485 18 94.0 Moderately correlated
9 ZNF723 18 15.2 Weakly correlated
10 ZNF101 17 43.0 Weakly correlated
11 ZNF534 14 19.6 Weakly correlated
12 ZNF84 13 99.0 Highly correlated
13 ZNF133 11 99.0 Highly correlated
14 ZNF317 10 99.0 Highly correlated
15 ZNF705D 10 28.9 Weakly correlated
16 ZNF766 10 43.0 Weakly correlated
17 ZNF705B 10 28.9 Weakly correlated
18 ZNF263 10 180.0 Weakly correlated
19 ZNF92 8 28.9 Weakly correlated
20 ZNF2 7 99.0 Highly correlated
21 ZFP69 7 99.0 Highly correlated
22 ZNF28 6 28.9 Weakly correlated
23 ZNF701 6 28.9 Weakly correlated
24 ZNF429 5 28.9 Weakly correlated
25 ZNF793 5 99.0 Highly correlated
26 ZNF320 5 28.9 Weakly correlated
27 ZNF679 5 28.9 Weakly correlated
28 ZFP28 5 99.0 Highly correlated
29 ZNF140 5 99.0 Highly correlated
30 ZNF257 4 0.0 Weakly correlated
31 ZNF75D 4 94.0 Moderately correlated
32 ZNF479 4 6.4 Weakly correlated
33 ZNF597 4 94.0 Moderately correlated
34 ZFP57 4 87.0 Moderately correlated
35 ZNF677 4 99.0 Highly correlated
36 ZNF26 4 99.0 Highly correlated
37 ZNF558 3 99.0 Highly correlated
38 ZNF490 3 43.0 Weakly correlated
39 ZNF44 3 43.0 Weakly correlated
40 ZNF433 3 43.0 Weakly correlated
41 ZNF823 3 43.0 Weakly correlated
42 ZKSCAN1 3 160.0 Weakly correlated
43 ZNF248 3 99.0 Highly correlated
44 ZNF528 2 43.0 Weakly correlated
45 ZNF160 2 74.0 Weakly correlated
46 ZFP14 2 99.0 Highly correlated
47 ZNF202 2 160.0 Weakly correlated
48 ZNF816 2 28.9 Weakly correlated
49 ZNF707 2 74.0 Weakly correlated
50 ZNF287 2 99.0 Highly correlated
51 ZNF10 2 99.0 Highly correlated
52 ZNF589 2 28.9 Weakly correlated
53 ZNF506 2 28.9 Weakly correlated
54 ZFP69B 2 99.0 Highly correlated
55 ZNF735 2 28.9 Weakly correlated
56 ZNF585A 2 99.0 Highly correlated
57 ZNF394 2 99.0 Highly correlated
58 ZNF549 2 87.0 Moderately correlated
59 ZNF264 2 99.0 Highly correlated
60 ZFP82 1 99.0 Highly correlated
61 ZNF440 1 28.9 Weakly correlated
62 ZNF189 1 99.0 Highly correlated
63 ZNF695 1 28.9 Weakly correlated
64 ZKSCAN5 1 160.0 Weakly correlated
65 ZFP37 1 99.0 Highly correlated
66 ZNF18 1 160.0 Weakly correlated
67 ZNF337 1 43.0 Weakly correlated
68 ZNF136 1 74.0 Weakly correlated
69 ZNF468 1 28.9 Weakly correlated
70 ZNF141 1 43.0 Weakly correlated
71 ZNF225 1 74.0 Weakly correlated
72 ZNF33A 1 99.0 Highly correlated
73 ZNF471 1 94.0 Moderately correlated
74 ZNF675 1 8.6 Weakly correlated
75 ZNF573 1 94.0 Moderately correlated
76 ZNF554 1 99.0 Highly correlated
77 ZNF585B 1 99.0 Highly correlated
78 ZNF671 1 94.0 Moderately correlated
79 ZNF81 1 99.0 Highly correlated
80 ZNF674 1 99.0 Highly correlated
81 ZNF175 1 94.0 Moderately correlated
82 ZNF879 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Moderately correlated
2 ZNF251 94.0 Moderately correlated
3 ZNF2 99.0 Highly correlated
4 ZNF317 99.0 Highly correlated
5 ZNF486 8.6 Weakly correlated
6 ZNF534 19.6 Weakly correlated
7 ZNF605 99.0 Highly correlated
8 ZNF680 28.9 Weakly correlated
9 ZNF701 28.9 Weakly correlated
10 ZNF705B 28.9 Weakly correlated
11 ZNF723 15.2 Weakly correlated
12 ZNF84 99.0 Highly correlated
13 ZNF92 28.9 Weakly correlated