ZRdb KZFP & Repeats
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LINE_L1MC3_3END

  • Name
    L1MC3_3END
  • Repbase
    L1MC3
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000277
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
cttgtatccaaaatatacaaagaactcttaaaactcaacaataagaaaacaaacaacccaattaaaaaatgggcaaaagatctgaacagacacctcaccaaagaagatatacagatggcaaataagcatatgaaaagatgctcaacatcatttgtcattagggaattgcaaattaaaacaacaatgagataccactacacacctattagaatggctaaaatccaaaaaactgacaataccaantgctggcgaggatgcggagcaacaggaactctcattcattgctggtgggaatgcaaaatggtacagccactttggaagacagtttggcagtttcttacaaagctaaacatagtcttaccatacgatccagcaatcgcgctcctaggtatttacccaactgatttgaaaacttatgtccacacaaaaacctgcacgcgaatgtttatagcagctttattcataatcgccaaaaactggaagcaaccaagatgtccttcaataggtgaatggataaacaaactgtggtacatccatacaatggaatattattcagcgataaaaagaaatgagctatcaagccacgaaaagacatggatgaatcttaaatgcatattgctaagtgaaagaagccagtctgaaaaggctacatactgtatgattccaattatatgacattctggaaaaggcaaaactatagagacggtaaanagatcagtggttgccaggggttcggggagnagggggaagggttgaataggtgaagcacaggggattttttagggcggtgaaactattctgtatgatactgtaatggtggatacatgacactatgcatttgtcaaaacccatagaactttacagcacaaagagtgaaccttaatgtatgcaaattttaaaaaatcatttaggaggtcgggggatcccaggatggaatgcagantgtgacaaaanaatctaactgtattacaaatgtatgaaacaacctcactgaagggggtgggggaaaaaggtgctgacctaagtaactttggaaatgagtggagtctgtaagactaaaggcaaaaggaactgtacataagcactgtactctagttgataaagttgtttcccacgggggtacgggttaacaattctganaccgctatacatgtatactggaattgaacaattaagtaaatggatggcggatggtgggagccaggtttctcactgttggagtgggagnttacagataagcaaggggaggaggctagaatgatccatgtggtaatggattagagttggagacatcagtatgaactcatgtttagcttaatatagatacagatggttacatatagaaatatttatagatatgtgtatatacacgggttagtatacacacatatatttccttgctctgtcagctgagagggcctagaagcaacgacaccccagtagcaacgagcacacctagcgcccagatcttggtttctaataccattctccaataaaaggaaccagggctccttggagaaatggctgattctaggactggggcaggaaatatacaagatgagcctggagcatcttgtagtgccagaaagtaaggaagtgctcaaaaaaacccacaatgatgggggtatgtcaaagggacacaggagccaactgaaagagctcccaatggccaaagctggaacaatttgagcaacaaaataaataaagtagtattggattataacccaaagtataaaataaatatccatgagtccatactgatataaataaatgattgaataaataaataaatgggggagaagagacaaatctcccgtgcagaagaattccaaataatttatgtagatactccgccctcaaggaggtggagcataactccccactccttaagtgtgggctgcgcatagtgacttccttccaaagagtacagtatggaaaggggggaaaaaagagtaactttacagtggagaaacctgacaaacactacctcagccaggtgatcaaggtcaacatcaacagtgataagtcatgttgatagtatgtacccttgatatgatgtgatgagaatggcactttacctctgtggtcttcctcccnaaaacccataaccccagtctaatcatgagaaaaacatcagacaaatcccaattgagggacattctacaaaatacctgaccagtactcctcaaaactgtcaaggtcatcaaaaacaaggaaagtctgagaaactgtcacagccaagaggagcctaaggagacatgacgactaaatgtaatgtggtatcctggatgggatcctggaacagaaaaaggacattaggtaaaaactaaggaaatctgaataaagtatggactttagttaataataatgtatcaatattggttcattaattgtgacaaatgtaccatactaatgtaagatgttaataataggggaaactgggtgtggggtatatgggaactctctgtactatcttcgcaatttttctgtaaatctaaaactattctaaaataaaaagtttattttnaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 619 99.0 Highly correlated
2 ZNF251 184 94.0 Moderately correlated
3 ZNF605 161 99.0 Highly correlated
4 ZNF317 145 99.0 Highly correlated
5 ZNF766 144 43.0 Weakly correlated
6 ZNF394 136 99.0 Highly correlated
7 ZIM3 122 87.0 Moderately correlated
8 ZNF92 120 28.9 Weakly correlated
9 ZNF263 114 180.0 Weakly correlated
10 ZNF679 101 28.9 Weakly correlated
11 ZNF723 77 15.2 Weakly correlated
12 ZNF680 75 28.9 Weakly correlated
13 ZFP37 74 99.0 Highly correlated
14 ZNF534 55 19.6 Weakly correlated
15 ZKSCAN1 53 160.0 Weakly correlated
16 ZNF793 53 99.0 Highly correlated
17 ZNF175 52 94.0 Moderately correlated
18 ZNF2 52 99.0 Highly correlated
19 ZNF558 52 99.0 Highly correlated
20 ZNF705B 52 28.9 Weakly correlated
21 ZNF18 50 160.0 Weakly correlated
22 ZNF8 50 99.0 Highly correlated
23 ZNF589 48 28.9 Weakly correlated
24 ZNF101 42 43.0 Weakly correlated
25 ZNF324 38 99.0 Highly correlated
26 ZNF274 37 99.0 Highly correlated
27 ZNF584 37 99.0 Highly correlated
28 ZFP69B 36 99.0 Highly correlated
29 ZNF705D 36 28.9 Weakly correlated
30 ZNF485 34 94.0 Moderately correlated
31 ZNF615 34 99.0 Highly correlated
32 ZKSCAN8 33 160.0 Weakly correlated
33 ZNF197 33 99.0 Highly correlated
34 ZNF248 33 99.0 Highly correlated
35 ZNF479 32 6.4 Weakly correlated
36 ZNF610 27 28.9 Weakly correlated
37 ZNF75D 27 94.0 Moderately correlated
38 ZNF28 25 28.9 Weakly correlated
39 ZNF554 24 99.0 Highly correlated
40 ZFP57 22 87.0 Moderately correlated
41 ZNF257 20 0.0 Weakly correlated
42 ZNF506 20 28.9 Weakly correlated
43 ZNF597 20 94.0 Moderately correlated
44 ZNF701 20 28.9 Weakly correlated
45 ZNF735 20 28.9 Weakly correlated
46 ZNF441 18 43.0 Weakly correlated
47 ZNF133 17 99.0 Highly correlated
48 ZNF182 16 99.0 Highly correlated
49 ZNF585A 16 99.0 Highly correlated
50 ZNF84 16 99.0 Highly correlated
51 ZNF429 14 28.9 Weakly correlated
52 ZNF160 13 74.0 Weakly correlated
53 ZNF320 13 28.9 Weakly correlated
54 ZNF528 13 43.0 Weakly correlated
55 ZNF585B 13 99.0 Highly correlated
56 ZNF486 12 8.6 Weakly correlated
57 ZFP28 11 99.0 Highly correlated
58 ZNF284 11 43.0 Weakly correlated
59 ZNF674 11 99.0 Highly correlated
60 ZNF682 11 28.9 Weakly correlated
61 ZNF136 10 74.0 Weakly correlated
62 ZNF490 10 43.0 Weakly correlated
63 ZNF140 9 99.0 Highly correlated
64 ZNF26 9 99.0 Highly correlated
65 ZNF471 8 94.0 Moderately correlated
66 ZNF671 8 94.0 Moderately correlated
67 ZNF716 8 19.6 Weakly correlated
68 ZNF808 8 19.6 Weakly correlated
69 ZNF44 7 43.0 Weakly correlated
70 ZNF264 6 99.0 Highly correlated
71 ZNF695 6 28.9 Weakly correlated
72 ZNF786 6 99.0 Highly correlated
73 ZNF816 6 28.9 Weakly correlated
74 ZFP69 5 99.0 Highly correlated
75 ZNF141 5 43.0 Weakly correlated
76 ZNF282 5 319.0 Weakly correlated
77 ZNF287 5 99.0 Highly correlated
78 ZNF331 5 94.0 Moderately correlated
79 ZNF445 5 99.0 Highly correlated
80 ZNF700 5 28.9 Weakly correlated
81 ZNF707 5 74.0 Weakly correlated
82 ZNF778 5 74.0 Weakly correlated
83 ZNF81 5 99.0 Highly correlated
84 ZNF91 5 6.0 Weakly correlated
85 ZIK1 4 87.0 Moderately correlated
86 ZNF273 4 28.9 Weakly correlated
87 ZNF440 4 28.9 Weakly correlated
88 ZNF454 4 99.0 Highly correlated
89 ZNF468 4 28.9 Weakly correlated
90 ZNF549 4 87.0 Moderately correlated
91 ZNF567 4 99.0 Highly correlated
92 ZNF823 4 43.0 Weakly correlated
93 ZNF836 4 43.0 Weakly correlated
94 ZKSCAN5 3 160.0 Weakly correlated
95 ZNF10 3 99.0 Highly correlated
96 ZNF211 3 94.0 Moderately correlated
97 ZNF334 3 99.0 Highly correlated
98 ZNF354A 3 99.0 Highly correlated
99 ZNF41 3 99.0 Highly correlated
100 ZNF436 3 180.0 Weakly correlated
101 ZNF510 3 99.0 Highly correlated
102 ZNF519 3 19.6 Weakly correlated
103 ZNF557 3 15.2 Weakly correlated
104 ZNF563 3 28.9 Weakly correlated
105 ZNF677 3 99.0 Highly correlated
106 ZNF789 3 99.0 Highly correlated
107 ZNF792 3 94.0 Moderately correlated
108 ZFP14 2 99.0 Highly correlated
109 ZFP90 2 99.0 Highly correlated
110 ZNF17 2 69.0 Weakly correlated
111 ZNF189 2 99.0 Highly correlated
112 ZNF202 2 160.0 Weakly correlated
113 ZNF337 2 43.0 Weakly correlated
114 ZNF33A 2 99.0 Highly correlated
115 ZNF425 2 94.0 Moderately correlated
116 ZNF568 2 99.0 Highly correlated
117 ZNF573 2 94.0 Moderately correlated
118 ZNF607 2 43.0 Weakly correlated
119 ZNF614 2 99.0 Highly correlated
120 ZNF641 2 99.0 Highly correlated
121 ZNF675 2 8.6 Weakly correlated
122 ZNF730 2 19.6 Weakly correlated
123 ZNF780A 2 43.0 Weakly correlated
124 ZNF85 2 28.9 Weakly correlated
125 ZNF879 2 99.0 Highly correlated
126 RBAK 1 99.0 Highly correlated
127 ZFP82 1 99.0 Highly correlated
128 ZKSCAN2 1 180.0 Weakly correlated
129 ZNF135 1 94.0 Moderately correlated
130 ZNF157 1 99.0 Highly correlated
131 ZNF169 1 94.0 Moderately correlated
132 ZNF225 1 74.0 Weakly correlated
133 ZNF230 1 28.9 Weakly correlated
134 ZNF234 1 99.0 Highly correlated
135 ZNF283 1 99.0 Highly correlated
136 ZNF30 1 94.0 Moderately correlated
137 ZNF343 1 74.0 Weakly correlated
138 ZNF347 1 43.0 Weakly correlated
139 ZNF34 1 99.0 Highly correlated
140 ZNF418 1 43.0 Weakly correlated
141 ZNF420 1 94.0 Moderately correlated
142 ZNF432 1 99.0 Highly correlated
143 ZNF43 1 43.0 Weakly correlated
144 ZNF442 1 43.0 Weakly correlated
145 ZNF483 1 99.0 Highly correlated
146 ZNF529 1 99.0 Highly correlated
147 ZNF547 1 74.0 Weakly correlated
148 ZNF565 1 99.0 Highly correlated
149 ZNF582 1 99.0 Highly correlated
150 ZNF583 1 99.0 Highly correlated
151 ZNF613 1 99.0 Highly correlated
152 ZNF626 1 0.0 Weakly correlated
153 ZNF667 1 99.0 Highly correlated
154 ZNF681 1 28.9 Weakly correlated
155 ZNF736 1 43.0 Weakly correlated
156 ZNF75A 1 94.0 Moderately correlated
157 ZNF765 1 8.6 Weakly correlated
158 ZNF777 1 319.0 Weakly correlated
159 ZNF780B 1 74.0 Weakly correlated
160 ZNF799 1 43.0 Weakly correlated
161 ZNF850 1 28.9 Weakly correlated
162 ZNF878 1 43.0 Weakly correlated
163 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF605 150 99.0 Highly correlated
2 ZNF251 148 94.0 Moderately correlated
3 ZIM3 69 87.0 Moderately correlated
4 ZNF723 44 15.2 Weakly correlated
5 ZNF8 40 99.0 Highly correlated
6 ZNF615 32 99.0 Highly correlated
7 ZNF534 32 19.6 Weakly correlated
8 ZNF680 28 28.9 Weakly correlated
9 ZNF263 28 180.0 Weakly correlated
10 ZNF248 27 99.0 Highly correlated
11 ZNF485 26 94.0 Moderately correlated
12 ZNF382 22 99.0 Highly correlated
13 ZNF317 22 99.0 Highly correlated
14 ZNF793 20 99.0 Highly correlated
15 ZNF101 18 43.0 Weakly correlated
16 ZNF766 16 43.0 Weakly correlated
17 ZNF92 15 28.9 Weakly correlated
18 ZNF479 15 6.4 Weakly correlated
19 ZNF160 13 74.0 Weakly correlated
20 ZNF75D 12 94.0 Moderately correlated
21 ZNF705B 11 28.9 Weakly correlated
22 ZNF585A 11 99.0 Highly correlated
23 ZNF84 10 99.0 Highly correlated
24 ZNF558 9 99.0 Highly correlated
25 ZNF506 9 28.9 Weakly correlated
26 ZNF28 8 28.9 Weakly correlated
27 ZNF674 8 99.0 Highly correlated
28 ZNF705D 8 28.9 Weakly correlated
29 ZNF735 8 28.9 Weakly correlated
30 ZNF133 7 99.0 Highly correlated
31 ZNF175 7 94.0 Moderately correlated
32 ZNF716 7 19.6 Weakly correlated
33 ZNF429 6 28.9 Weakly correlated
34 ZNF554 6 99.0 Highly correlated
35 ZNF589 6 28.9 Weakly correlated
36 ZNF136 6 74.0 Weakly correlated
37 ZNF44 6 43.0 Weakly correlated
38 ZNF490 6 43.0 Weakly correlated
39 ZFP57 5 87.0 Moderately correlated
40 ZFP37 5 99.0 Highly correlated
41 ZNF671 5 94.0 Moderately correlated
42 ZNF18 5 160.0 Weakly correlated
43 ZFP69 5 99.0 Highly correlated
44 ZNF257 5 0.0 Weakly correlated
45 ZNF471 5 94.0 Moderately correlated
46 ZNF26 5 99.0 Highly correlated
47 ZNF701 5 28.9 Weakly correlated
48 ZNF597 5 94.0 Moderately correlated
49 ZNF140 5 99.0 Highly correlated
50 ZNF287 4 99.0 Highly correlated
51 ZNF81 4 99.0 Highly correlated
52 ZNF584 4 99.0 Highly correlated
53 ZKSCAN1 4 160.0 Weakly correlated
54 ZNF677 3 99.0 Highly correlated
55 ZFP28 3 99.0 Highly correlated
56 ZIK1 3 87.0 Moderately correlated
57 ZNF707 3 74.0 Weakly correlated
58 ZNF141 3 43.0 Weakly correlated
59 ZNF567 3 99.0 Highly correlated
60 ZNF440 3 28.9 Weakly correlated
61 ZNF816 3 28.9 Weakly correlated
62 ZKSCAN5 3 160.0 Weakly correlated
63 ZNF324 2 99.0 Highly correlated
64 ZNF585B 2 99.0 Highly correlated
65 ZNF789 2 99.0 Highly correlated
66 ZNF282 2 319.0 Weakly correlated
67 ZNF679 2 28.9 Weakly correlated
68 ZNF394 2 99.0 Highly correlated
69 ZNF10 2 99.0 Highly correlated
70 ZNF610 2 28.9 Weakly correlated
71 ZNF264 2 99.0 Highly correlated
72 ZNF211 2 94.0 Moderately correlated
73 ZFP14 2 99.0 Highly correlated
74 ZNF780A 2 43.0 Weakly correlated
75 ZNF197 2 99.0 Highly correlated
76 ZKSCAN8 1 160.0 Weakly correlated
77 ZNF283 1 99.0 Highly correlated
78 ZNF823 1 43.0 Weakly correlated
79 ZNF879 1 99.0 Highly correlated
80 ZFP90 1 99.0 Highly correlated
81 ZFP82 1 99.0 Highly correlated
82 ZNF549 1 87.0 Moderately correlated
83 ZFP69B 1 99.0 Highly correlated
84 ZNF354A 1 99.0 Highly correlated
85 ZNF337 1 43.0 Weakly correlated
86 ZNF320 1 28.9 Weakly correlated
87 ZNF274 1 99.0 Highly correlated
88 ZNF182 1 99.0 Highly correlated
89 ZNF468 1 28.9 Weakly correlated
90 ZNF786 1 99.0 Highly correlated
91 ZNF641 1 99.0 Highly correlated
92 ZNF528 1 43.0 Weakly correlated
93 ZNF189 1 99.0 Highly correlated
94 ZNF792 1 94.0 Moderately correlated
95 ZNF432 1 99.0 Highly correlated
96 ZNF343 1 74.0 Weakly correlated
97 ZNF2 1 99.0 Highly correlated
98 ZNF202 1 160.0 Weakly correlated
99 ZNF573 1 94.0 Moderately correlated
100 ZNF695 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF133 99.0 Highly correlated
2 ZNF175 94.0 Moderately correlated
3 ZNF248 99.0 Highly correlated
4 ZNF251 94.0 Moderately correlated
5 ZNF263 180.0 Weakly correlated
6 ZNF28 28.9 Weakly correlated
7 ZNF490 43.0 Weakly correlated
8 ZNF554 99.0 Highly correlated
9 ZNF585A 99.0 Highly correlated
10 ZNF589 28.9 Weakly correlated
11 ZNF605 99.0 Highly correlated
12 ZNF615 99.0 Highly correlated
13 ZNF680 28.9 Weakly correlated
14 ZNF723 15.2 Weakly correlated
15 ZNF75D 94.0 Moderately correlated
16 ZNF766 43.0 Weakly correlated
17 ZNF793 99.0 Highly correlated
18 ZNF84 99.0 Highly correlated
19 ZNF92 28.9 Weakly correlated