ZRdb KZFP & Repeats
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LINE_L1MC2_3END

  • Name
    L1MC2_3END
  • Repbase
    L1MC2
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000276
Description :

ORF2 ends at bp ~675
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctggtatccaaaatatacaaagaactcttaaaactcaacaataagaaaacaaacaacccaattnaaaaatgggcaaaagatctgaacagacacctcaccaaagaagatatacagatggcaaataagcatatgaaaagatgctcaacatcatatgtcattagggaattgcaaattaaaacaacaatgagataccactacacacctattagaatggctaaaatccaaaacactgacaacaccaaatgctggcgaggatgtggagcaacaggaactctcattcattgctggtgggaatgcaaaatggtacagccactttggaagacagtttggcagtttcttacaaagctaaacatantcttaccatacgatccagcaatcgcgctccttggtatttacccaaatgagttgaaaacttatgtccacacaaaaacctgcacacgaatgtttatagcagctttattcataattgccaaaacttggaagcaaccaagatgtccttcaataggtgaatggataaacaaactgtggtacatccatacaatggaatattattcagcgataaaaagaaatgagctatcaagccacgaaaagacatggaggaaccttaaatgcatattgctaagtgaaagaagccagtctgaaaaggctacatactgtatgattccaactatatgacattctggaaaaggcaaaactatggagacagtaaaaagatcagtggttgccaggggttcggggggagggagggagggatgaataggtggagcacaggggatttttagggcagtgaaactattctgtatgatactgtaatggtggatacatgncattatacatttgtcaaaacccatagaatgtacaacacaaagagtgaaccctaatgtaaactatggactttagttaataataatgtatcaatattggttcatcaattgtaacaaatgtaccacactaatgcaagatgttaataataggggaaactgtgtgngggnggggtgagggggtatatgggaactctctgtactttctgctcaatttttctgtaaacctaaaactgctctaaaaaataaagtctattaattttttaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 369 94.0 Moderately correlated
2 ZNF382 332 99.0 Highly correlated
3 ZNF317 80 99.0 Highly correlated
4 ZNF8 72 99.0 Highly correlated
5 ZIM3 67 87.0 Moderately correlated
6 ZNF263 63 180.0 Weakly correlated
7 ZNF680 57 28.9 Weakly correlated
8 ZNF705B 55 28.9 Weakly correlated
9 ZNF248 52 99.0 Highly correlated
10 ZNF394 52 99.0 Highly correlated
11 ZNF485 45 94.0 Moderately correlated
12 ZNF705D 38 28.9 Weakly correlated
13 ZNF92 36 28.9 Weakly correlated
14 ZNF679 35 28.9 Weakly correlated
15 ZNF723 35 15.2 Weakly correlated
16 ZNF766 35 43.0 Weakly correlated
17 ZNF558 32 99.0 Highly correlated
18 ZNF84 27 99.0 Highly correlated
19 ZNF793 25 99.0 Highly correlated
20 ZNF133 24 99.0 Highly correlated
21 ZFP37 23 99.0 Highly correlated
22 ZNF479 18 6.4 Weakly correlated
23 ZNF534 18 19.6 Weakly correlated
24 ZFP69 17 99.0 Highly correlated
25 ZNF101 16 43.0 Weakly correlated
26 ZNF18 16 160.0 Weakly correlated
27 ZNF589 16 28.9 Weakly correlated
28 ZNF610 16 28.9 Weakly correlated
29 ZNF490 15 43.0 Weakly correlated
30 ZNF597 15 94.0 Moderately correlated
31 ZNF175 14 94.0 Moderately correlated
32 ZNF2 13 99.0 Highly correlated
33 ZKSCAN8 12 160.0 Weakly correlated
34 ZNF182 12 99.0 Highly correlated
35 ZKSCAN1 11 160.0 Weakly correlated
36 ZNF324 11 99.0 Highly correlated
37 ZNF486 11 8.6 Weakly correlated
38 ZNF554 11 99.0 Highly correlated
39 ZNF585B 11 99.0 Highly correlated
40 ZFP57 10 87.0 Moderately correlated
41 ZNF160 10 74.0 Weakly correlated
42 ZNF320 10 28.9 Weakly correlated
43 ZNF584 10 99.0 Highly correlated
44 ZFP28 9 99.0 Highly correlated
45 ZNF197 9 99.0 Highly correlated
46 ZNF257 9 0.0 Weakly correlated
47 ZNF528 9 43.0 Weakly correlated
48 ZFP69B 8 99.0 Highly correlated
49 ZNF136 8 74.0 Weakly correlated
50 ZNF454 8 99.0 Highly correlated
51 ZNF274 7 99.0 Highly correlated
52 ZNF140 6 99.0 Highly correlated
53 ZNF28 6 28.9 Weakly correlated
54 ZNF506 6 28.9 Weakly correlated
55 ZNF141 5 43.0 Weakly correlated
56 ZNF585A 5 99.0 Highly correlated
57 ZNF701 5 28.9 Weakly correlated
58 ZNF81 5 99.0 Highly correlated
59 ZNF879 5 99.0 Highly correlated
60 ZNF264 4 99.0 Highly correlated
61 ZNF26 4 99.0 Highly correlated
62 ZNF334 4 99.0 Highly correlated
63 ZNF471 4 94.0 Moderately correlated
64 ZNF547 4 74.0 Weakly correlated
65 ZNF707 4 74.0 Weakly correlated
66 ZNF7 4 99.0 Highly correlated
67 ZNF816 4 28.9 Weakly correlated
68 ZNF273 3 28.9 Weakly correlated
69 ZNF284 3 43.0 Weakly correlated
70 ZNF429 3 28.9 Weakly correlated
71 ZNF549 3 87.0 Moderately correlated
72 ZNF586 3 43.0 Weakly correlated
73 ZNF605 3 99.0 Highly correlated
74 ZNF808 3 19.6 Weakly correlated
75 ZNF823 3 43.0 Weakly correlated
76 ZFP90 2 99.0 Highly correlated
77 ZNF202 2 160.0 Weakly correlated
78 ZNF282 2 319.0 Weakly correlated
79 ZNF287 2 99.0 Highly correlated
80 ZNF30 2 94.0 Moderately correlated
81 ZNF337 2 43.0 Weakly correlated
82 ZNF41 2 99.0 Highly correlated
83 ZNF433 2 43.0 Weakly correlated
84 ZNF441 2 43.0 Weakly correlated
85 ZNF483 2 99.0 Highly correlated
86 ZNF510 2 99.0 Highly correlated
87 ZNF519 2 19.6 Weakly correlated
88 ZNF555 2 94.0 Moderately correlated
89 ZNF567 2 99.0 Highly correlated
90 ZNF582 2 99.0 Highly correlated
91 ZNF671 2 94.0 Moderately correlated
92 ZNF674 2 99.0 Highly correlated
93 ZNF675 2 8.6 Weakly correlated
94 ZNF677 2 99.0 Highly correlated
95 ZNF682 2 28.9 Weakly correlated
96 ZNF705E 2 0.0 Weakly correlated
97 ZNF730 2 19.6 Weakly correlated
98 ZNF735 2 28.9 Weakly correlated
99 ZNF736 2 43.0 Weakly correlated
100 ZNF75D 2 94.0 Moderately correlated
101 ZNF792 2 94.0 Moderately correlated
102 ZNF845 2 28.9 Weakly correlated
103 ZFP14 1 99.0 Highly correlated
104 ZFP82 1 99.0 Highly correlated
105 ZIK1 1 87.0 Moderately correlated
106 ZNF17 1 69.0 Weakly correlated
107 ZNF184 1 99.0 Highly correlated
108 ZNF211 1 94.0 Moderately correlated
109 ZNF225 1 74.0 Weakly correlated
110 ZNF333 1 99.0 Highly correlated
111 ZNF33A 1 99.0 Highly correlated
112 ZNF347 1 43.0 Weakly correlated
113 ZNF350 1 99.0 Highly correlated
114 ZNF354A 1 99.0 Highly correlated
115 ZNF425 1 94.0 Moderately correlated
116 ZNF445 1 99.0 Highly correlated
117 ZNF468 1 28.9 Weakly correlated
118 ZNF496 1 99.0 Highly correlated
119 ZNF530 1 28.9 Weakly correlated
120 ZNF557 1 15.2 Weakly correlated
121 ZNF565 1 99.0 Highly correlated
122 ZNF595 1 43.0 Weakly correlated
123 ZNF607 1 43.0 Weakly correlated
124 ZNF611 1 19.6 Weakly correlated
125 ZNF613 1 99.0 Highly correlated
126 ZNF669 1 43.0 Weakly correlated
127 ZNF695 1 28.9 Weakly correlated
128 ZNF727 1 19.6 Weakly correlated
129 ZNF777 1 319.0 Weakly correlated
130 ZNF778 1 74.0 Weakly correlated
131 ZNF799 1 43.0 Weakly correlated
132 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 355 94.0 Moderately correlated
2 ZNF8 60 99.0 Highly correlated
3 ZNF248 49 99.0 Highly correlated
4 ZNF485 43 94.0 Moderately correlated
5 ZIM3 39 87.0 Moderately correlated
6 ZNF382 30 99.0 Highly correlated
7 ZNF92 24 28.9 Weakly correlated
8 ZNF84 24 99.0 Highly correlated
9 ZNF723 23 15.2 Weakly correlated
10 ZNF705B 18 28.9 Weakly correlated
11 ZNF680 17 28.9 Weakly correlated
12 ZNF263 16 180.0 Weakly correlated
13 ZNF133 15 99.0 Highly correlated
14 ZFP69 15 99.0 Highly correlated
15 ZNF558 13 99.0 Highly correlated
16 ZNF534 12 19.6 Weakly correlated
17 ZNF479 12 6.4 Weakly correlated
18 ZNF317 12 99.0 Highly correlated
19 ZNF705D 11 28.9 Weakly correlated
20 ZNF101 11 43.0 Weakly correlated
21 ZNF793 11 99.0 Highly correlated
22 ZNF160 10 74.0 Weakly correlated
23 ZNF490 8 43.0 Weakly correlated
24 ZNF136 8 74.0 Weakly correlated
25 ZNF585B 6 99.0 Highly correlated
26 ZNF597 6 94.0 Moderately correlated
27 ZNF141 5 43.0 Weakly correlated
28 ZNF140 5 99.0 Highly correlated
29 ZNF81 5 99.0 Highly correlated
30 ZNF766 5 43.0 Weakly correlated
31 ZFP28 4 99.0 Highly correlated
32 ZNF585A 4 99.0 Highly correlated
33 ZNF26 4 99.0 Highly correlated
34 ZNF486 4 8.6 Weakly correlated
35 ZNF554 3 99.0 Highly correlated
36 ZNF264 3 99.0 Highly correlated
37 ZFP57 3 87.0 Moderately correlated
38 ZNF701 3 28.9 Weakly correlated
39 ZNF7 3 99.0 Highly correlated
40 ZNF320 3 28.9 Weakly correlated
41 ZNF823 2 43.0 Weakly correlated
42 ZNF816 2 28.9 Weakly correlated
43 ZNF454 2 99.0 Highly correlated
44 ZFP90 2 99.0 Highly correlated
45 ZNF257 2 0.0 Weakly correlated
46 ZNF677 2 99.0 Highly correlated
47 ZNF337 2 43.0 Weakly correlated
48 ZNF679 2 28.9 Weakly correlated
49 ZNF429 2 28.9 Weakly correlated
50 ZNF202 2 160.0 Weakly correlated
51 ZNF674 2 99.0 Highly correlated
52 ZNF483 2 99.0 Highly correlated
53 ZNF354A 1 99.0 Highly correlated
54 ZKSCAN1 1 160.0 Weakly correlated
55 ZNF707 1 74.0 Weakly correlated
56 ZKSCAN8 1 160.0 Weakly correlated
57 ZFP82 1 99.0 Highly correlated
58 ZNF565 1 99.0 Highly correlated
59 ZNF506 1 28.9 Weakly correlated
60 ZNF695 1 28.9 Weakly correlated
61 ZNF735 1 28.9 Weakly correlated
62 ZNF75D 1 94.0 Moderately correlated
63 ZNF792 1 94.0 Moderately correlated
64 ZFP14 1 99.0 Highly correlated
65 ZNF33A 1 99.0 Highly correlated
66 ZNF182 1 99.0 Highly correlated
67 ZNF879 1 99.0 Highly correlated
68 ZNF433 1 43.0 Weakly correlated
69 ZNF211 1 94.0 Moderately correlated
70 ZNF282 1 319.0 Weakly correlated
71 ZNF567 1 99.0 Highly correlated
72 ZNF468 1 28.9 Weakly correlated
73 ZNF394 1 99.0 Highly correlated
74 ZNF28 1 28.9 Weakly correlated
75 ZNF471 1 94.0 Moderately correlated
76 ZNF350 1 99.0 Highly correlated
77 ZNF610 1 28.9 Weakly correlated
78 ZNF18 1 160.0 Weakly correlated
79 ZNF675 1 8.6 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF248 99.0 Highly correlated
2 ZNF251 94.0 Moderately correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF585B 99.0 Highly correlated
5 ZNF680 28.9 Weakly correlated
6 ZNF705B 28.9 Weakly correlated
7 ZNF793 99.0 Highly correlated
8 ZNF84 99.0 Highly correlated
9 ZNF92 28.9 Weakly correlated