ZRdb KZFP & Repeats
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LINE_L1MC1_3END

  • Name
    L1MC1_3END
  • Repbase
    L1MC1
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000275
Description :

ORF2 ends at bp ~675
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctgttatccaaaatatacaaagaactcttaaaactcaacaataagaaaacgaacaacccgattnaaaaatgggccaaagacctnaacagacacctcaccaaagaagatatacagatggcaaataagcatatgaaaagatgctccacatcatatgtcatcagggaaatgcaaattaaaacaacaatgagataccactacacacctattagaatggccaaaatccagaacactgacaacaccaaatgctggcgaggatgtggagcaacaggaactctcattcattgctggtgggaatgcaaaatggtacagccactttggaagacagtttggcagtttcttacaaaactaaacatactcttaccatacgatccagcaatcgcgctccttggtatttacccaaaggagttgaaaacttatgtccacacaaaaacctgcacacggatgtttatagcagctttattcataattgccaaaacttggaagcaaccaagatgtccttcagtaggtgaatggataaataaactgtggtacatccagacaatggaatattattcagcgctaaaaagaaatgagctatcaagccatgaaaagacatggaggaaacttaaatgcatattactaagtgaaagaagccaatctgaaaaggctacatactgtatgattccaactatatgacattctggaaaaggcaaaactatggagacagtaaaaagatcagtggttgccaggggttgggggggagggagggatgaataggcggagcacagaggatttttagggcagtgaaactactctgtatgatactataatggtggatacatgtcattatacatttgtccaaacccatagaatgtacaacaccaagagtgaaccctaatgtaaactatggactttgggtgataatgatgtgtcaatgtaggttcatcgattgtaacaaatgtaccactctggtgggggatgttgatagtgggggaggctgtgcatgtgtgggggcagggggtatatgggaaatctctgtaccttccgctcaattttgctgtgaacctaaaactgctctaaaaaataaagtctatttaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 1500 99.0 Highly correlated
2 ZNF251 309 94.0 Moderately correlated
3 ZIM3 205 87.0 Moderately correlated
4 ZNF317 202 99.0 Highly correlated
5 ZNF248 174 99.0 Highly correlated
6 ZNF263 149 180.0 Weakly correlated
7 ZNF766 146 43.0 Weakly correlated
8 ZNF8 130 99.0 Highly correlated
9 ZNF680 126 28.9 Weakly correlated
10 ZNF485 108 94.0 Moderately correlated
11 ZNF723 106 15.2 Weakly correlated
12 ZNF394 101 99.0 Highly correlated
13 ZNF84 96 99.0 Highly correlated
14 ZNF92 93 28.9 Weakly correlated
15 ZNF679 84 28.9 Weakly correlated
16 ZNF558 78 99.0 Highly correlated
17 ZNF705B 73 28.9 Weakly correlated
18 ZNF479 66 6.4 Weakly correlated
19 ZFP69 60 99.0 Highly correlated
20 ZNF705D 57 28.9 Weakly correlated
21 ZNF75D 48 94.0 Moderately correlated
22 ZFP37 46 99.0 Highly correlated
23 ZNF490 45 43.0 Weakly correlated
24 ZNF793 44 99.0 Highly correlated
25 ZNF18 42 160.0 Weakly correlated
26 ZNF320 41 28.9 Weakly correlated
27 ZNF486 40 8.6 Weakly correlated
28 ZNF2 39 99.0 Highly correlated
29 ZNF534 35 19.6 Weakly correlated
30 ZNF160 33 74.0 Weakly correlated
31 ZKSCAN1 30 160.0 Weakly correlated
32 ZNF133 30 99.0 Highly correlated
33 ZNF175 30 94.0 Moderately correlated
34 ZKSCAN8 27 160.0 Weakly correlated
35 ZNF101 27 43.0 Weakly correlated
36 ZNF182 27 99.0 Highly correlated
37 ZFP69B 25 99.0 Highly correlated
38 ZNF136 24 74.0 Weakly correlated
39 ZNF585A 23 99.0 Highly correlated
40 ZNF597 23 94.0 Moderately correlated
41 ZNF197 21 99.0 Highly correlated
42 ZNF589 21 28.9 Weakly correlated
43 ZFP28 19 99.0 Highly correlated
44 ZNF28 19 28.9 Weakly correlated
45 ZNF584 19 99.0 Highly correlated
46 ZNF441 18 43.0 Weakly correlated
47 ZNF274 17 99.0 Highly correlated
48 ZNF324 17 99.0 Highly correlated
49 ZFP57 16 87.0 Moderately correlated
50 ZNF610 16 28.9 Weakly correlated
51 ZNF506 15 28.9 Weakly correlated
52 ZNF528 15 43.0 Weakly correlated
53 ZNF554 15 99.0 Highly correlated
54 ZNF567 14 99.0 Highly correlated
55 ZNF287 12 99.0 Highly correlated
56 ZNF735 12 28.9 Weakly correlated
57 ZNF140 11 99.0 Highly correlated
58 ZNF141 11 43.0 Weakly correlated
59 ZNF211 11 94.0 Moderately correlated
60 ZNF677 11 99.0 Highly correlated
61 ZNF701 11 28.9 Weakly correlated
62 ZNF823 11 43.0 Weakly correlated
63 ZNF257 10 0.0 Weakly correlated
64 ZFP14 9 99.0 Highly correlated
65 ZIK1 9 87.0 Moderately correlated
66 ZNF202 9 160.0 Weakly correlated
67 ZNF454 9 99.0 Highly correlated
68 ZNF682 9 28.9 Weakly correlated
69 ZNF81 9 99.0 Highly correlated
70 ZNF425 8 94.0 Moderately correlated
71 ZNF429 8 28.9 Weakly correlated
72 ZNF169 7 94.0 Moderately correlated
73 ZNF471 7 94.0 Moderately correlated
74 ZNF778 7 74.0 Weakly correlated
75 ZNF792 7 94.0 Moderately correlated
76 ZKSCAN5 6 160.0 Weakly correlated
77 ZNF284 6 43.0 Weakly correlated
78 ZNF337 5 43.0 Weakly correlated
79 ZNF468 5 28.9 Weakly correlated
80 ZNF519 5 19.6 Weakly correlated
81 ZNF547 5 74.0 Weakly correlated
82 ZNF549 5 87.0 Moderately correlated
83 ZNF585B 5 99.0 Highly correlated
84 ZNF695 5 28.9 Weakly correlated
85 ZNF808 5 19.6 Weakly correlated
86 ZNF845 5 28.9 Weakly correlated
87 ZNF879 5 99.0 Highly correlated
88 ZNF264 4 99.0 Highly correlated
89 ZNF354A 4 99.0 Highly correlated
90 ZNF44 4 43.0 Weakly correlated
91 ZNF500 4 160.0 Weakly correlated
92 ZNF557 4 15.2 Weakly correlated
93 ZNF641 4 99.0 Highly correlated
94 ZNF707 4 74.0 Weakly correlated
95 ZNF727 4 19.6 Weakly correlated
96 ZNF7 4 99.0 Highly correlated
97 ZNF85 4 28.9 Weakly correlated
98 ZFP90 3 99.0 Highly correlated
99 ZNF17 3 69.0 Weakly correlated
100 ZNF234 3 99.0 Highly correlated
101 ZNF26 3 99.0 Highly correlated
102 ZNF273 3 28.9 Weakly correlated
103 ZNF334 3 99.0 Highly correlated
104 ZNF440 3 28.9 Weakly correlated
105 ZNF658 3 99.0 Highly correlated
106 ZNF780A 3 43.0 Weakly correlated
107 ZNF786 3 99.0 Highly correlated
108 ZNF799 3 43.0 Weakly correlated
109 ZNF91 3 6.0 Weakly correlated
110 PRDM9 2 0.0 Weakly correlated
111 ZFP30 2 99.0 Highly correlated
112 ZFP82 2 99.0 Highly correlated
113 ZNF250 2 99.0 Highly correlated
114 ZNF30 2 94.0 Moderately correlated
115 ZNF33A 2 99.0 Highly correlated
116 ZNF34 2 99.0 Highly correlated
117 ZNF41 2 99.0 Highly correlated
118 ZNF445 2 99.0 Highly correlated
119 ZNF578 2 15.2 Weakly correlated
120 ZNF605 2 99.0 Highly correlated
121 ZNF627 2 74.0 Weakly correlated
122 ZNF671 2 94.0 Moderately correlated
123 ZNF674 2 99.0 Highly correlated
124 ZNF700 2 28.9 Weakly correlated
125 ZNF75A 2 94.0 Moderately correlated
126 ZNF761 2 19.6 Weakly correlated
127 ZNF777 2 319.0 Weakly correlated
128 ZNF878 2 43.0 Weakly correlated
129 ZNF93 2 8.6 Weakly correlated
130 ZNF100 1 28.9 Weakly correlated
131 ZNF10 1 99.0 Highly correlated
132 ZNF12 1 99.0 Highly correlated
133 ZNF189 1 99.0 Highly correlated
134 ZNF222 1 43.0 Weakly correlated
135 ZNF227 1 99.0 Highly correlated
136 ZNF282 1 319.0 Weakly correlated
137 ZNF331 1 94.0 Moderately correlated
138 ZNF333 1 99.0 Highly correlated
139 ZNF347 1 43.0 Weakly correlated
140 ZNF430 1 19.6 Weakly correlated
141 ZNF433 1 43.0 Weakly correlated
142 ZNF436 1 180.0 Weakly correlated
143 ZNF483 1 99.0 Highly correlated
144 ZNF484 1 99.0 Highly correlated
145 ZNF510 1 99.0 Highly correlated
146 ZNF560 1 43.0 Weakly correlated
147 ZNF569 1 99.0 Highly correlated
148 ZNF573 1 94.0 Moderately correlated
149 ZNF583 1 99.0 Highly correlated
150 ZNF595 1 43.0 Weakly correlated
151 ZNF626 1 0.0 Weakly correlated
152 ZNF66 1 0.0 Weakly correlated
153 ZNF681 1 28.9 Weakly correlated
154 ZNF716 1 19.6 Weakly correlated
155 ZNF730 1 19.6 Weakly correlated
156 ZNF776 1 43.0 Weakly correlated
157 ZNF77 1 87.0 Moderately correlated
158 ZNF850 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 272 94.0 Moderately correlated
2 ZNF382 201 99.0 Highly correlated
3 ZNF248 158 99.0 Highly correlated
4 ZIM3 128 87.0 Moderately correlated
5 ZNF8 120 99.0 Highly correlated
6 ZNF485 101 94.0 Moderately correlated
7 ZNF84 86 99.0 Highly correlated
8 ZNF723 70 15.2 Weakly correlated
9 ZNF92 60 28.9 Weakly correlated
10 ZFP69 55 99.0 Highly correlated
11 ZNF479 51 6.4 Weakly correlated
12 ZNF263 41 180.0 Weakly correlated
13 ZNF680 39 28.9 Weakly correlated
14 ZNF490 34 43.0 Weakly correlated
15 ZNF317 33 99.0 Highly correlated
16 ZNF160 31 74.0 Weakly correlated
17 ZNF793 28 99.0 Highly correlated
18 ZNF75D 27 94.0 Moderately correlated
19 ZNF558 26 99.0 Highly correlated
20 ZNF534 24 19.6 Weakly correlated
21 ZNF766 21 43.0 Weakly correlated
22 ZNF133 18 99.0 Highly correlated
23 ZNF320 18 28.9 Weakly correlated
24 ZNF705B 17 28.9 Weakly correlated
25 ZNF705D 16 28.9 Weakly correlated
26 ZNF101 15 43.0 Weakly correlated
27 ZNF136 14 74.0 Weakly correlated
28 ZFP28 11 99.0 Highly correlated
29 ZNF585A 11 99.0 Highly correlated
30 ZNF567 10 99.0 Highly correlated
31 ZFP14 9 99.0 Highly correlated
32 ZNF735 9 28.9 Weakly correlated
33 ZNF141 9 43.0 Weakly correlated
34 ZIK1 9 87.0 Moderately correlated
35 ZNF597 9 94.0 Moderately correlated
36 ZNF677 8 99.0 Highly correlated
37 ZNF140 8 99.0 Highly correlated
38 ZNF81 8 99.0 Highly correlated
39 ZFP57 7 87.0 Moderately correlated
40 ZNF211 6 94.0 Moderately correlated
41 ZNF287 6 99.0 Highly correlated
42 ZNF202 5 160.0 Weakly correlated
43 ZNF701 5 28.9 Weakly correlated
44 ZNF468 4 28.9 Weakly correlated
45 ZNF7 4 99.0 Highly correlated
46 ZNF486 4 8.6 Weakly correlated
47 ZNF471 4 94.0 Moderately correlated
48 ZNF679 4 28.9 Weakly correlated
49 ZNF506 4 28.9 Weakly correlated
50 ZNF44 4 43.0 Weakly correlated
51 ZNF18 4 160.0 Weakly correlated
52 ZNF337 3 43.0 Weakly correlated
53 ZNF354A 3 99.0 Highly correlated
54 ZFP90 3 99.0 Highly correlated
55 ZKSCAN1 3 160.0 Weakly correlated
56 ZNF707 3 74.0 Weakly correlated
57 ZNF169 3 94.0 Moderately correlated
58 ZKSCAN5 3 160.0 Weakly correlated
59 ZNF823 3 43.0 Weakly correlated
60 ZNF454 2 99.0 Highly correlated
61 ZFP82 2 99.0 Highly correlated
62 ZNF257 2 0.0 Weakly correlated
63 ZNF197 2 99.0 Highly correlated
64 ZNF394 2 99.0 Highly correlated
65 ZNF780A 2 43.0 Weakly correlated
66 ZNF674 2 99.0 Highly correlated
67 ZNF440 2 28.9 Weakly correlated
68 ZNF264 2 99.0 Highly correlated
69 ZNF695 2 28.9 Weakly correlated
70 ZNF34 2 99.0 Highly correlated
71 ZNF879 1 99.0 Highly correlated
72 ZNF584 1 99.0 Highly correlated
73 ZNF573 1 94.0 Moderately correlated
74 ZNF175 1 94.0 Moderately correlated
75 ZNF26 1 99.0 Highly correlated
76 PRDM9 1 0.0 Weakly correlated
77 ZNF91 1 6.0 Weakly correlated
78 ZNF727 1 19.6 Weakly correlated
79 ZFP37 1 99.0 Highly correlated
80 ZKSCAN8 1 160.0 Weakly correlated
81 ZNF10 1 99.0 Highly correlated
82 ZNF250 1 99.0 Highly correlated
83 ZNF605 1 99.0 Highly correlated
84 ZNF761 1 19.6 Weakly correlated
85 ZNF776 1 43.0 Weakly correlated
86 ZNF85 1 28.9 Weakly correlated
87 ZNF282 1 319.0 Weakly correlated
88 ZNF2 1 99.0 Highly correlated
89 ZNF626 1 0.0 Weakly correlated
90 ZNF425 1 94.0 Moderately correlated
91 ZNF549 1 87.0 Moderately correlated
92 ZNF554 1 99.0 Highly correlated
93 ZNF585B 1 99.0 Highly correlated
94 ZNF610 1 28.9 Weakly correlated
95 ZNF671 1 94.0 Moderately correlated
96 ZNF93 1 8.6 Weakly correlated
97 ZNF589 1 28.9 Weakly correlated
98 ZNF792 1 94.0 Moderately correlated
99 ZNF333 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP14 99.0 Highly correlated
2 ZFP28 99.0 Highly correlated
3 ZFP57 87.0 Moderately correlated
4 ZNF248 99.0 Highly correlated
5 ZNF251 94.0 Moderately correlated
6 ZNF263 180.0 Weakly correlated
7 ZNF320 28.9 Weakly correlated
8 ZNF597 94.0 Moderately correlated
9 ZNF677 99.0 Highly correlated
10 ZNF680 28.9 Weakly correlated
11 ZNF705B 28.9 Weakly correlated
12 ZNF766 43.0 Weakly correlated
13 ZNF793 99.0 Highly correlated
14 ZNF81 99.0 Highly correlated
15 ZNF84 99.0 Highly correlated
16 ZNF92 28.9 Weakly correlated