ZRdb KZFP & Repeats
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LINE_L1MB8_3END

  • Name
    L1MB8_3END
  • Repbase
    L1MB8
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000274
Description :

ORF2 ends at bp ~675
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
cttgtatccagaatatataaagaactcttacaactcaataataaaaagacaaataacccaattnaaaaatgggcaaaggatctgaatagacatttctccaaagaagatatacaaatggccaataagcacatgaaaagatgctcaacatcattagtcatcagggaaatgcaaatcaaaaccacaatgagataccacttcacacccactaggatggctataatcaaaaagacagataataacaagtgttggcgaggatgtggagaaattggaaccctcatacactgctggtgggaatgtaaaatggtgcagccgctttggaaaacagtctggcagttcctcaaaaggttaaacatagagttaccatatgacccagcaattccactcctaggtatatacccaagagaaatgaaaacatatgtccacacaaaaacttgtacacgaatgttcatagcagcattattcataatagccaaaaagtggaaacaacccaaatgtccatcaactgatgaatggataaataaaatgtggtatatccatacaatggaatattattcggcaataaaaaggaatgaagtactgatacatgctacaacatggatgaaccttgaaaacattatgctaagtgaaagaagccagtcacaaaagaccacatattgtatgattccatttatatgaaatgtccagaataggcaaatctatagagacagaaagtagattagtggttgcctagggctggggggaagggggaatggggagtgactgctaatgggtacggggtttcttttnggggtgatgaaaatgttctaaaatgattgtggtgatggttgcacaactctgtgaatatactaaaaaccattgaattgtacactttaaatgggtgaattgtatggtatgtgaattatatctcaataaagctgttaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 986 99.0 Highly correlated
2 ZNF251 748 94.0 Moderately correlated
3 ZNF140 388 99.0 Highly correlated
4 ZNF317 356 99.0 Highly correlated
5 ZNF8 338 99.0 Highly correlated
6 ZNF766 249 43.0 Weakly correlated
7 ZNF394 179 99.0 Highly correlated
8 ZIM3 137 87.0 Moderately correlated
9 ZNF18 119 160.0 Weakly correlated
10 ZNF248 111 99.0 Highly correlated
11 ZNF679 85 28.9 Weakly correlated
12 ZNF558 84 99.0 Highly correlated
13 ZNF263 81 180.0 Weakly correlated
14 ZFP37 79 99.0 Highly correlated
15 ZNF486 78 8.6 Weakly correlated
16 ZNF680 78 28.9 Weakly correlated
17 ZNF723 76 15.2 Weakly correlated
18 ZNF10 72 99.0 Highly correlated
19 ZNF92 67 28.9 Weakly correlated
20 ZNF589 65 28.9 Weakly correlated
21 ZFP28 64 99.0 Highly correlated
22 ZNF2 63 99.0 Highly correlated
23 ZNF175 60 94.0 Moderately correlated
24 ZKSCAN1 59 160.0 Weakly correlated
25 ZNF101 59 43.0 Weakly correlated
26 ZNF705B 58 28.9 Weakly correlated
27 ZNF160 53 74.0 Weakly correlated
28 ZNF320 53 28.9 Weakly correlated
29 ZFP69B 52 99.0 Highly correlated
30 ZNF136 50 74.0 Weakly correlated
31 ZNF324 50 99.0 Highly correlated
32 ZNF429 46 28.9 Weakly correlated
33 ZNF554 45 99.0 Highly correlated
34 ZNF197 44 99.0 Highly correlated
35 ZNF274 44 99.0 Highly correlated
36 ZNF793 43 99.0 Highly correlated
37 ZNF479 39 6.4 Weakly correlated
38 ZNF257 36 0.0 Weakly correlated
39 ZNF84 36 99.0 Highly correlated
40 ZKSCAN8 35 160.0 Weakly correlated
41 ZNF534 35 19.6 Weakly correlated
42 ZNF610 33 28.9 Weakly correlated
43 ZNF705D 32 28.9 Weakly correlated
44 ZNF490 30 43.0 Weakly correlated
45 ZNF81 29 99.0 Highly correlated
46 ZNF133 28 99.0 Highly correlated
47 ZNF584 28 99.0 Highly correlated
48 ZNF597 28 94.0 Moderately correlated
49 ZNF677 28 99.0 Highly correlated
50 ZNF75D 28 94.0 Moderately correlated
51 ZNF735 27 28.9 Weakly correlated
52 ZNF182 26 99.0 Highly correlated
53 ZNF441 24 43.0 Weakly correlated
54 ZNF506 23 28.9 Weakly correlated
55 ZFP69 22 99.0 Highly correlated
56 ZNF471 21 94.0 Moderately correlated
57 ZNF485 17 94.0 Moderately correlated
58 ZNF792 17 94.0 Moderately correlated
59 ZNF519 16 19.6 Weakly correlated
60 ZNF701 16 28.9 Weakly correlated
61 ZNF284 15 43.0 Weakly correlated
62 ZFP57 14 87.0 Moderately correlated
63 ZNF17 13 69.0 Weakly correlated
64 ZNF264 13 99.0 Highly correlated
65 ZNF287 13 99.0 Highly correlated
66 ZNF585B 13 99.0 Highly correlated
67 ZNF695 13 28.9 Weakly correlated
68 ZNF823 13 43.0 Weakly correlated
69 ZNF671 12 94.0 Moderately correlated
70 ZNF879 12 99.0 Highly correlated
71 ZFP30 11 99.0 Highly correlated
72 ZNF26 11 99.0 Highly correlated
73 ZNF354A 11 99.0 Highly correlated
74 ZNF528 11 43.0 Weakly correlated
75 ZNF547 11 74.0 Weakly correlated
76 ZNF585A 11 99.0 Highly correlated
77 ZNF184 8 99.0 Highly correlated
78 ZNF202 8 160.0 Weakly correlated
79 ZNF234 8 99.0 Highly correlated
80 ZNF433 8 43.0 Weakly correlated
81 ZNF440 8 28.9 Weakly correlated
82 ZNF549 8 87.0 Moderately correlated
83 ZNF559 8 74.0 Weakly correlated
84 ZNF778 8 74.0 Weakly correlated
85 ZNF230 7 28.9 Weakly correlated
86 ZNF44 7 43.0 Weakly correlated
87 ZNF484 7 99.0 Highly correlated
88 ZNF91 7 6.0 Weakly correlated
89 ZNF28 6 28.9 Weakly correlated
90 ZNF331 6 94.0 Moderately correlated
91 ZNF707 6 74.0 Weakly correlated
92 ZNF808 6 19.6 Weakly correlated
93 ZNF250 5 99.0 Highly correlated
94 ZNF334 5 99.0 Highly correlated
95 ZNF432 5 99.0 Highly correlated
96 ZNF563 5 28.9 Weakly correlated
97 ZNF583 5 99.0 Highly correlated
98 ZNF641 5 99.0 Highly correlated
99 ZNF674 5 99.0 Highly correlated
100 ZNF765 5 8.6 Weakly correlated
101 ZNF7 5 99.0 Highly correlated
102 ZNF93 5 8.6 Weakly correlated
103 ZNF169 4 94.0 Moderately correlated
104 ZNF211 4 94.0 Moderately correlated
105 ZNF282 4 319.0 Weakly correlated
106 ZNF41 4 99.0 Highly correlated
107 ZNF425 4 94.0 Moderately correlated
108 ZNF454 4 99.0 Highly correlated
109 ZNF510 4 99.0 Highly correlated
110 ZNF544 4 0.0 Weakly correlated
111 ZNF560 4 43.0 Weakly correlated
112 ZNF624 4 99.0 Highly correlated
113 ZNF675 4 8.6 Weakly correlated
114 ZNF699 4 99.0 Highly correlated
115 ZNF705E 4 0.0 Weakly correlated
116 ZNF786 4 99.0 Highly correlated
117 ZNF878 4 43.0 Weakly correlated
118 ZFP90 3 99.0 Highly correlated
119 ZKSCAN5 3 160.0 Weakly correlated
120 ZNF112 3 99.0 Highly correlated
121 ZNF141 3 43.0 Weakly correlated
122 ZNF233 3 99.0 Highly correlated
123 ZNF337 3 43.0 Weakly correlated
124 ZNF33A 3 99.0 Highly correlated
125 ZNF347 3 43.0 Weakly correlated
126 ZNF420 3 94.0 Moderately correlated
127 ZNF445 3 99.0 Highly correlated
128 ZNF468 3 28.9 Weakly correlated
129 ZNF556 3 94.0 Moderately correlated
130 ZNF586 3 43.0 Weakly correlated
131 ZNF611 3 19.6 Weakly correlated
132 ZNF658 3 99.0 Highly correlated
133 ZNF665 3 28.9 Weakly correlated
134 ZNF66 3 0.0 Weakly correlated
135 ZNF718 3 19.6 Weakly correlated
136 ZNF761 3 19.6 Weakly correlated
137 ZNF780A 3 43.0 Weakly correlated
138 ZNF813 3 28.9 Weakly correlated
139 ZNF816 3 28.9 Weakly correlated
140 ZNF845 3 28.9 Weakly correlated
141 ZFP14 2 99.0 Highly correlated
142 ZFP92 2 99.0 Highly correlated
143 ZKSCAN4 2 99.0 Highly correlated
144 ZNF124 2 43.0 Weakly correlated
145 ZNF12 2 99.0 Highly correlated
146 ZNF14 2 69.0 Weakly correlated
147 ZNF177 2 94.0 Moderately correlated
148 ZNF223 2 43.0 Weakly correlated
149 ZNF224 2 69.0 Weakly correlated
150 ZNF286A 2 160.0 Weakly correlated
151 ZNF30 2 94.0 Moderately correlated
152 ZNF354C 2 99.0 Highly correlated
153 ZNF43 2 43.0 Weakly correlated
154 ZNF500 2 160.0 Weakly correlated
155 ZNF551 2 94.0 Moderately correlated
156 ZNF567 2 99.0 Highly correlated
157 ZNF568 2 99.0 Highly correlated
158 ZNF587B 2 8.6 Weakly correlated
159 ZNF649 2 28.9 Weakly correlated
160 ZNF730 2 19.6 Weakly correlated
161 ZNF732 2 28.9 Weakly correlated
162 ZNF773 2 94.0 Moderately correlated
163 ZNF850 2 28.9 Weakly correlated
164 ZNF852 2 94.0 Moderately correlated
165 ZFP82 1 99.0 Highly correlated
166 ZIK1 1 87.0 Moderately correlated
167 ZNF114 1 28.9 Weakly correlated
168 ZNF135 1 94.0 Moderately correlated
169 ZNF154 1 94.0 Moderately correlated
170 ZNF180 1 99.0 Highly correlated
171 ZNF189 1 99.0 Highly correlated
172 ZNF195 1 28.9 Weakly correlated
173 ZNF213 1 180.0 Weakly correlated
174 ZNF215 1 99.0 Highly correlated
175 ZNF221 1 74.0 Weakly correlated
176 ZNF227 1 99.0 Highly correlated
177 ZNF229 1 99.0 Highly correlated
178 ZNF253 1 19.6 Weakly correlated
179 ZNF268 1 94.0 Moderately correlated
180 ZNF273 1 28.9 Weakly correlated
181 ZNF304 1 99.0 Highly correlated
182 ZNF350 1 99.0 Highly correlated
183 ZNF383 1 99.0 Highly correlated
184 ZNF416 1 43.0 Weakly correlated
185 ZNF417 1 28.9 Weakly correlated
186 ZNF418 1 43.0 Weakly correlated
187 ZNF419 1 28.9 Weakly correlated
188 ZNF436 1 180.0 Weakly correlated
189 ZNF443 1 19.6 Weakly correlated
190 ZNF460 1 74.0 Weakly correlated
191 ZNF461 1 99.0 Highly correlated
192 ZNF473 1 43.0 Weakly correlated
193 ZNF483 1 99.0 Highly correlated
194 ZNF487 1 28.9 Weakly correlated
195 ZNF514 1 94.0 Moderately correlated
196 ZNF517 1 94.0 Moderately correlated
197 ZNF530 1 28.9 Weakly correlated
198 ZNF546 1 99.0 Highly correlated
199 ZNF550 1 94.0 Moderately correlated
200 ZNF569 1 99.0 Highly correlated
201 ZNF570 1 99.0 Highly correlated
202 ZNF578 1 15.2 Weakly correlated
203 ZNF57 1 28.9 Weakly correlated
204 ZNF595 1 43.0 Weakly correlated
205 ZNF599 1 99.0 Highly correlated
206 ZNF607 1 43.0 Weakly correlated
207 ZNF613 1 99.0 Highly correlated
208 ZNF615 1 99.0 Highly correlated
209 ZNF616 1 43.0 Weakly correlated
210 ZNF669 1 43.0 Weakly correlated
211 ZNF681 1 28.9 Weakly correlated
212 ZNF682 1 28.9 Weakly correlated
213 ZNF700 1 28.9 Weakly correlated
214 ZNF705A 1 28.9 Weakly correlated
215 ZNF716 1 19.6 Weakly correlated
216 ZNF726 1 28.9 Weakly correlated
217 ZNF727 1 19.6 Weakly correlated
218 ZNF728 1 19.6 Weakly correlated
219 ZNF736 1 43.0 Weakly correlated
220 ZNF747 1 43.0 Weakly correlated
221 ZNF749 1 28.9 Weakly correlated
222 ZNF75A 1 94.0 Moderately correlated
223 ZNF763 1 15.2 Weakly correlated
224 ZNF772 1 94.0 Moderately correlated
225 ZNF77 1 87.0 Moderately correlated
226 ZNF782 1 99.0 Highly correlated
227 ZNF789 1 99.0 Highly correlated
228 ZNF814 1 0.0 Weakly correlated
229 ZNF829 1 99.0 Highly correlated
230 ZNF836 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 691 94.0 Moderately correlated
2 ZNF8 247 99.0 Highly correlated
3 ZNF382 115 99.0 Highly correlated
4 ZNF248 94 99.0 Highly correlated
5 ZNF140 80 99.0 Highly correlated
6 ZNF317 74 99.0 Highly correlated
7 ZNF10 71 99.0 Highly correlated
8 ZIM3 70 87.0 Moderately correlated
9 ZNF723 53 15.2 Weakly correlated
10 ZNF766 46 43.0 Weakly correlated
11 ZNF160 43 74.0 Weakly correlated
12 ZNF136 38 74.0 Weakly correlated
13 ZNF101 33 43.0 Weakly correlated
14 ZFP28 32 99.0 Highly correlated
15 ZNF486 28 8.6 Weakly correlated
16 ZNF84 26 99.0 Highly correlated
17 ZNF677 25 99.0 Highly correlated
18 ZNF81 25 99.0 Highly correlated
19 ZNF92 24 28.9 Weakly correlated
20 ZNF18 23 160.0 Weakly correlated
21 ZNF680 22 28.9 Weakly correlated
22 ZNF735 21 28.9 Weakly correlated
23 ZNF793 19 99.0 Highly correlated
24 ZNF558 18 99.0 Highly correlated
25 ZNF320 17 28.9 Weakly correlated
26 ZNF534 17 19.6 Weakly correlated
27 ZNF490 15 43.0 Weakly correlated
28 ZFP69 14 99.0 Highly correlated
29 ZNF324 13 99.0 Highly correlated
30 ZNF133 12 99.0 Highly correlated
31 ZNF75D 11 94.0 Moderately correlated
32 ZNF263 11 180.0 Weakly correlated
33 ZNF354A 10 99.0 Highly correlated
34 ZFP37 9 99.0 Highly correlated
35 ZNF287 9 99.0 Highly correlated
36 ZNF485 9 94.0 Moderately correlated
37 ZNF479 9 6.4 Weakly correlated
38 ZNF879 8 99.0 Highly correlated
39 ZNF429 8 28.9 Weakly correlated
40 ZNF585A 8 99.0 Highly correlated
41 ZNF705B 8 28.9 Weakly correlated
42 ZNF433 7 43.0 Weakly correlated
43 ZNF554 7 99.0 Highly correlated
44 ZNF671 7 94.0 Moderately correlated
45 ZNF695 6 28.9 Weakly correlated
46 ZNF440 6 28.9 Weakly correlated
47 ZNF394 6 99.0 Highly correlated
48 ZNF257 6 0.0 Weakly correlated
49 ZNF471 6 94.0 Moderately correlated
50 ZNF705D 6 28.9 Weakly correlated
51 ZNF44 5 43.0 Weakly correlated
52 ZNF264 5 99.0 Highly correlated
53 ZFP57 4 87.0 Moderately correlated
54 ZNF432 4 99.0 Highly correlated
55 ZNF701 4 28.9 Weakly correlated
56 ZNF17 4 69.0 Weakly correlated
57 ZNF792 4 94.0 Moderately correlated
58 ZFP90 3 99.0 Highly correlated
59 ZNF26 3 99.0 Highly correlated
60 ZNF197 3 99.0 Highly correlated
61 ZNF549 3 87.0 Moderately correlated
62 ZNF585B 3 99.0 Highly correlated
63 ZNF250 3 99.0 Highly correlated
64 ZNF675 3 8.6 Weakly correlated
65 ZNF610 3 28.9 Weakly correlated
66 ZFP14 2 99.0 Highly correlated
67 ZKSCAN1 2 160.0 Weakly correlated
68 ZNF468 2 28.9 Weakly correlated
69 ZNF567 2 99.0 Highly correlated
70 ZNF202 2 160.0 Weakly correlated
71 ZNF484 2 99.0 Highly correlated
72 ZNF519 2 19.6 Weakly correlated
73 ZNF597 2 94.0 Moderately correlated
74 ZNF765 2 8.6 Weakly correlated
75 ZNF589 2 28.9 Weakly correlated
76 ZNF506 2 28.9 Weakly correlated
77 ZFP69B 1 99.0 Highly correlated
78 ZFP82 1 99.0 Highly correlated
79 ZIK1 1 87.0 Moderately correlated
80 ZKSCAN5 1 160.0 Weakly correlated
81 ZNF154 1 94.0 Moderately correlated
82 ZNF615 1 99.0 Highly correlated
83 ZNF679 1 28.9 Weakly correlated
84 ZNF350 1 99.0 Highly correlated
85 ZNF510 1 99.0 Highly correlated
86 ZNF707 1 74.0 Weakly correlated
87 ZNF816 1 28.9 Weakly correlated
88 ZNF175 1 94.0 Moderately correlated
89 ZNF284 1 43.0 Weakly correlated
90 ZNF425 1 94.0 Moderately correlated
91 ZNF789 1 99.0 Highly correlated
92 ZNF550 1 94.0 Moderately correlated
93 ZNF57 1 28.9 Weakly correlated
94 ZNF641 1 99.0 Highly correlated
95 ZNF649 1 28.9 Weakly correlated
96 ZNF674 1 99.0 Highly correlated
97 ZNF7 1 99.0 Highly correlated
98 ZNF211 1 94.0 Moderately correlated
99 ZNF331 1 94.0 Moderately correlated
100 ZNF337 1 43.0 Weakly correlated
101 ZNF347 1 43.0 Weakly correlated
102 ZNF383 1 99.0 Highly correlated
103 ZNF441 1 43.0 Weakly correlated
104 ZNF749 1 28.9 Weakly correlated
105 ZNF230 1 28.9 Weakly correlated
106 ZNF782 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP28 99.0 Highly correlated
2 ZNF18 160.0 Weakly correlated
3 ZNF251 94.0 Moderately correlated
4 ZNF263 180.0 Weakly correlated
5 ZNF433 43.0 Weakly correlated
6 ZNF479 6.4 Weakly correlated
7 ZNF486 8.6 Weakly correlated
8 ZNF554 99.0 Highly correlated
9 ZNF671 94.0 Moderately correlated
10 ZNF680 28.9 Weakly correlated
11 ZNF723 15.2 Weakly correlated
12 ZNF766 43.0 Weakly correlated
13 ZNF793 99.0 Highly correlated
14 ZNF84 99.0 Highly correlated
15 ZNF92 28.9 Weakly correlated