ZRdb KZFP & Repeats
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LINE_L1MB7_3END

  • Name
    L1MB7_3END
  • Repbase
    L1MB7
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000273
Description :

ORF2 ends at bp ~675
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
cttgtatccagaatatataaagaactcttacaactcaacaataaaaagacaaataacccaattnaaaaatgggcaaaggatttgaatagacatttctccaaagaagatatacaaatggccaataagcacatgaaaagatgctcaacatcattagtcattagggaaatgcaaatcaaaaccacaatgagataccacttcacacccactaggatggctataatnaaaaagacagacaataacaagtgttggcgaggatgtggagaaattggaaccctcatacattgctggtgggaatgtaaaatggtgcagccgctttggaaaacagtttggcagttcctcaaaaagttaaacatagagttaccatatgacccagcaattccactcctaggtatatacccaagagaantgaaaacatatgtccacacaaaaacttgtacacgaatgttcatagcagcattattcataatagccaaaaagtggaaacaacccaaatgtccatcaactgatgaatggataaacaaaatgtggtatatccatacaatggaatattattcggccataaaaaggaatgaagtactgatacatgctacaacatggatgaaccttgaaaacattatgctaagtgaaagaagccagacacaaaaggccacatattgtatgattccatttatatgaaatgtccagaataggcaaatccatagagacagaaagtagattagtggttgccaggggctggggggaggggggaatggggagtgactgctaatgggtacggggtttctttttggggtgatgaaaatgttctggaattagatagtggtgatggttgcacaactctgtgaatatactaaaaaccactgaattgtacactttaaaagggtgaattttatggtatgtgaattatatctcaataaagctgttattttaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 1444 99.0 Highly correlated
2 ZNF251 1013 94.0 Moderately correlated
3 ZNF8 631 99.0 Highly correlated
4 ZNF140 586 99.0 Highly correlated
5 ZNF317 580 99.0 Highly correlated
6 ZNF766 416 43.0 Weakly correlated
7 ZNF394 289 99.0 Highly correlated
8 ZIM3 230 87.0 Moderately correlated
9 ZNF680 172 28.9 Weakly correlated
10 ZNF486 169 8.6 Weakly correlated
11 ZNF248 164 99.0 Highly correlated
12 ZNF175 157 94.0 Moderately correlated
13 ZNF589 157 28.9 Weakly correlated
14 ZNF10 156 99.0 Highly correlated
15 ZNF18 156 160.0 Weakly correlated
16 ZNF263 152 180.0 Weakly correlated
17 ZNF558 142 99.0 Highly correlated
18 ZFP37 140 99.0 Highly correlated
19 ZNF2 139 99.0 Highly correlated
20 ZNF723 115 15.2 Weakly correlated
21 ZFP28 106 99.0 Highly correlated
22 ZNF136 104 74.0 Weakly correlated
23 ZNF679 103 28.9 Weakly correlated
24 ZKSCAN1 98 160.0 Weakly correlated
25 ZNF584 98 99.0 Highly correlated
26 ZNF92 94 28.9 Weakly correlated
27 ZNF554 89 99.0 Highly correlated
28 ZNF101 88 43.0 Weakly correlated
29 ZNF705B 86 28.9 Weakly correlated
30 ZNF160 85 74.0 Weakly correlated
31 ZNF324 84 99.0 Highly correlated
32 ZFP69B 83 99.0 Highly correlated
33 ZNF197 77 99.0 Highly correlated
34 ZKSCAN8 75 160.0 Weakly correlated
35 ZNF793 73 99.0 Highly correlated
36 ZNF429 65 28.9 Weakly correlated
37 ZNF534 64 19.6 Weakly correlated
38 ZNF610 61 28.9 Weakly correlated
39 ZNF705D 58 28.9 Weakly correlated
40 ZNF490 56 43.0 Weakly correlated
41 ZNF597 56 94.0 Moderately correlated
42 ZNF133 52 99.0 Highly correlated
43 ZNF479 51 6.4 Weakly correlated
44 ZNF182 49 99.0 Highly correlated
45 ZNF441 49 43.0 Weakly correlated
46 ZNF257 48 0.0 Weakly correlated
47 ZNF677 48 99.0 Highly correlated
48 ZNF274 45 99.0 Highly correlated
49 ZNF81 44 99.0 Highly correlated
50 ZNF735 43 28.9 Weakly correlated
51 ZFP69 41 99.0 Highly correlated
52 ZNF84 38 99.0 Highly correlated
53 ZNF506 37 28.9 Weakly correlated
54 ZFP57 34 87.0 Moderately correlated
55 ZNF354A 31 99.0 Highly correlated
56 ZNF320 30 28.9 Weakly correlated
57 ZNF432 29 99.0 Highly correlated
58 ZNF471 29 94.0 Moderately correlated
59 ZNF701 29 28.9 Weakly correlated
60 ZNF879 27 99.0 Highly correlated
61 ZNF485 26 94.0 Moderately correlated
62 ZNF528 25 43.0 Weakly correlated
63 ZNF184 22 99.0 Highly correlated
64 ZNF264 22 99.0 Highly correlated
65 ZNF26 22 99.0 Highly correlated
66 ZNF75D 21 94.0 Moderately correlated
67 ZNF823 20 43.0 Weakly correlated
68 ZNF287 19 99.0 Highly correlated
69 ZNF202 18 160.0 Weakly correlated
70 ZNF154 16 94.0 Moderately correlated
71 ZNF519 16 19.6 Weakly correlated
72 ZNF550 16 94.0 Moderately correlated
73 ZNF284 14 43.0 Weakly correlated
74 ZNF28 14 28.9 Weakly correlated
75 ZNF585A 14 99.0 Highly correlated
76 ZNF585B 14 99.0 Highly correlated
77 ZNF211 12 94.0 Moderately correlated
78 ZNF41 12 99.0 Highly correlated
79 ZKSCAN5 11 160.0 Weakly correlated
80 ZNF250 11 99.0 Highly correlated
81 ZNF549 11 87.0 Moderately correlated
82 ZNF707 11 74.0 Weakly correlated
83 ZNF792 11 94.0 Moderately correlated
84 ZNF468 10 28.9 Weakly correlated
85 ZNF547 10 74.0 Weakly correlated
86 ZNF334 9 99.0 Highly correlated
87 ZNF347 9 43.0 Weakly correlated
88 ZNF440 9 28.9 Weakly correlated
89 ZNF583 9 99.0 Highly correlated
90 ZNF671 9 94.0 Moderately correlated
91 ZNF695 9 28.9 Weakly correlated
92 ZNF7 9 99.0 Highly correlated
93 ZNF808 9 19.6 Weakly correlated
94 ZFP30 8 99.0 Highly correlated
95 ZNF778 8 74.0 Weakly correlated
96 ZNF425 7 94.0 Moderately correlated
97 ZNF544 7 0.0 Weakly correlated
98 ZNF641 7 99.0 Highly correlated
99 ZNF716 7 19.6 Weakly correlated
100 ZNF786 7 99.0 Highly correlated
101 ZNF282 6 319.0 Weakly correlated
102 ZNF33A 6 99.0 Highly correlated
103 ZNF445 6 99.0 Highly correlated
104 ZNF484 6 99.0 Highly correlated
105 ZNF567 6 99.0 Highly correlated
106 ZNF816 6 28.9 Weakly correlated
107 ZNF169 5 94.0 Moderately correlated
108 ZNF17 5 69.0 Weakly correlated
109 ZNF189 5 99.0 Highly correlated
110 ZNF273 5 28.9 Weakly correlated
111 ZNF337 5 43.0 Weakly correlated
112 ZNF350 5 99.0 Highly correlated
113 ZNF433 5 43.0 Weakly correlated
114 ZNF43 5 43.0 Weakly correlated
115 ZNF559 5 74.0 Weakly correlated
116 ZNF674 5 99.0 Highly correlated
117 ZFP14 4 99.0 Highly correlated
118 ZFP82 4 99.0 Highly correlated
119 ZKSCAN4 4 99.0 Highly correlated
120 ZNF141 4 43.0 Weakly correlated
121 ZNF224 4 69.0 Weakly correlated
122 ZNF557 4 15.2 Weakly correlated
123 ZNF563 4 28.9 Weakly correlated
124 ZNF682 4 28.9 Weakly correlated
125 ZNF91 4 6.0 Weakly correlated
126 ZNF135 3 94.0 Moderately correlated
127 ZNF230 3 28.9 Weakly correlated
128 ZNF253 3 19.6 Weakly correlated
129 ZNF30 3 94.0 Moderately correlated
130 ZNF331 3 94.0 Moderately correlated
131 ZNF44 3 43.0 Weakly correlated
132 ZNF568 3 99.0 Highly correlated
133 ZNF611 3 19.6 Weakly correlated
134 ZNF700 3 28.9 Weakly correlated
135 ZNF730 3 19.6 Weakly correlated
136 ZNF736 3 43.0 Weakly correlated
137 ZNF93 3 8.6 Weakly correlated
138 ZNF333 2 99.0 Highly correlated
139 ZNF343 2 74.0 Weakly correlated
140 ZNF454 2 99.0 Highly correlated
141 ZNF483 2 99.0 Highly correlated
142 ZNF530 2 28.9 Weakly correlated
143 ZNF607 2 43.0 Weakly correlated
144 ZNF626 2 0.0 Weakly correlated
145 ZNF705E 2 0.0 Weakly correlated
146 ZNF761 2 19.6 Weakly correlated
147 ZNF765 2 8.6 Weakly correlated
148 ZNF777 2 319.0 Weakly correlated
149 ZNF780A 2 43.0 Weakly correlated
150 ZNF782 2 99.0 Highly correlated
151 ZNF789 2 99.0 Highly correlated
152 ZNF845 2 28.9 Weakly correlated
153 ZNF85 2 28.9 Weakly correlated
154 ZNF878 2 43.0 Weakly correlated
155 RBAK 1 99.0 Highly correlated
156 ZFP1 1 99.0 Highly correlated
157 ZNF100 1 28.9 Weakly correlated
158 ZNF124 1 43.0 Weakly correlated
159 ZNF12 1 99.0 Highly correlated
160 ZNF157 1 99.0 Highly correlated
161 ZNF222 1 43.0 Weakly correlated
162 ZNF225 1 74.0 Weakly correlated
163 ZNF234 1 99.0 Highly correlated
164 ZNF235 1 99.0 Highly correlated
165 ZNF304 1 99.0 Highly correlated
166 ZNF33B 1 99.0 Highly correlated
167 ZNF34 1 99.0 Highly correlated
168 ZNF354C 1 99.0 Highly correlated
169 ZNF418 1 43.0 Weakly correlated
170 ZNF430 1 19.6 Weakly correlated
171 ZNF45 1 99.0 Highly correlated
172 ZNF460 1 74.0 Weakly correlated
173 ZNF510 1 99.0 Highly correlated
174 ZNF560 1 43.0 Weakly correlated
175 ZNF57 1 28.9 Weakly correlated
176 ZNF586 1 43.0 Weakly correlated
177 ZNF613 1 99.0 Highly correlated
178 ZNF630 1 94.0 Moderately correlated
179 ZNF658 1 99.0 Highly correlated
180 ZNF665 1 28.9 Weakly correlated
181 ZNF669 1 43.0 Weakly correlated
182 ZNF675 1 8.6 Weakly correlated
183 ZNF684 1 99.0 Highly correlated
184 ZNF727 1 19.6 Weakly correlated
185 ZNF749 1 28.9 Weakly correlated
186 ZNF77 1 87.0 Moderately correlated
187 ZNF799 1 43.0 Weakly correlated
188 ZNF846 1 74.0 Weakly correlated
189 ZNF850 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 937 94.0 Moderately correlated
2 ZNF8 449 99.0 Highly correlated
3 ZNF10 149 99.0 Highly correlated
4 ZNF382 139 99.0 Highly correlated
5 ZNF248 137 99.0 Highly correlated
6 ZIM3 134 87.0 Moderately correlated
7 ZNF317 116 99.0 Highly correlated
8 ZNF140 110 99.0 Highly correlated
9 ZNF486 83 8.6 Weakly correlated
10 ZNF766 77 43.0 Weakly correlated
11 ZNF723 75 15.2 Weakly correlated
12 ZNF136 72 74.0 Weakly correlated
13 ZNF160 63 74.0 Weakly correlated
14 ZFP28 53 99.0 Highly correlated
15 ZNF680 53 28.9 Weakly correlated
16 ZNF558 39 99.0 Highly correlated
17 ZNF490 39 43.0 Weakly correlated
18 ZNF81 38 99.0 Highly correlated
19 ZNF18 38 160.0 Weakly correlated
20 ZNF101 37 43.0 Weakly correlated
21 ZNF677 36 99.0 Highly correlated
22 ZNF92 35 28.9 Weakly correlated
23 ZNF793 33 99.0 Highly correlated
24 ZFP69 32 99.0 Highly correlated
25 ZNF534 31 19.6 Weakly correlated
26 ZNF263 30 180.0 Weakly correlated
27 ZNF735 29 28.9 Weakly correlated
28 ZNF84 29 99.0 Highly correlated
29 ZNF133 28 99.0 Highly correlated
30 ZNF354A 23 99.0 Highly correlated
31 ZNF479 21 6.4 Weakly correlated
32 ZNF432 19 99.0 Highly correlated
33 ZNF879 18 99.0 Highly correlated
34 ZNF705D 18 28.9 Weakly correlated
35 ZNF705B 17 28.9 Weakly correlated
36 ZNF154 15 94.0 Moderately correlated
37 ZNF429 15 28.9 Weakly correlated
38 ZNF485 15 94.0 Moderately correlated
39 ZNF554 14 99.0 Highly correlated
40 ZNF26 14 99.0 Highly correlated
41 ZNF471 12 94.0 Moderately correlated
42 ZNF202 11 160.0 Weakly correlated
43 ZNF324 11 99.0 Highly correlated
44 ZNF701 11 28.9 Weakly correlated
45 ZNF264 10 99.0 Highly correlated
46 ZNF394 10 99.0 Highly correlated
47 ZNF287 10 99.0 Highly correlated
48 ZNF250 10 99.0 Highly correlated
49 ZNF585A 10 99.0 Highly correlated
50 ZNF320 9 28.9 Weakly correlated
51 ZNF550 9 94.0 Moderately correlated
52 ZNF257 8 0.0 Weakly correlated
53 ZNF597 8 94.0 Moderately correlated
54 ZNF7 8 99.0 Highly correlated
55 ZNF506 8 28.9 Weakly correlated
56 ZNF75D 8 94.0 Moderately correlated
57 ZFP37 7 99.0 Highly correlated
58 ZKSCAN8 6 160.0 Weakly correlated
59 ZNF197 6 99.0 Highly correlated
60 ZNF589 6 28.9 Weakly correlated
61 ZKSCAN1 5 160.0 Weakly correlated
62 ZKSCAN5 5 160.0 Weakly correlated
63 ZNF671 5 94.0 Moderately correlated
64 ZNF468 5 28.9 Weakly correlated
65 ZFP57 4 87.0 Moderately correlated
66 ZFP82 4 99.0 Highly correlated
67 ZNF528 4 43.0 Weakly correlated
68 ZNF175 4 94.0 Moderately correlated
69 ZNF2 4 99.0 Highly correlated
70 ZNF347 4 43.0 Weakly correlated
71 ZNF433 4 43.0 Weakly correlated
72 ZNF610 4 28.9 Weakly correlated
73 ZNF679 4 28.9 Weakly correlated
74 ZNF567 4 99.0 Highly correlated
75 ZNF792 4 94.0 Moderately correlated
76 ZFP14 3 99.0 Highly correlated
77 ZNF33A 3 99.0 Highly correlated
78 ZNF823 3 43.0 Weakly correlated
79 ZNF282 3 319.0 Weakly correlated
80 ZNF484 3 99.0 Highly correlated
81 ZNF211 3 94.0 Moderately correlated
82 ZNF585B 3 99.0 Highly correlated
83 ZNF17 3 69.0 Weakly correlated
84 ZNF674 3 99.0 Highly correlated
85 ZNF337 3 43.0 Weakly correlated
86 ZNF440 3 28.9 Weakly correlated
87 ZFP69B 2 99.0 Highly correlated
88 ZNF141 2 43.0 Weakly correlated
89 ZNF530 2 28.9 Weakly correlated
90 ZNF777 2 319.0 Weakly correlated
91 ZNF189 2 99.0 Highly correlated
92 ZNF483 2 99.0 Highly correlated
93 ZNF584 2 99.0 Highly correlated
94 ZNF695 2 28.9 Weakly correlated
95 ZNF716 2 19.6 Weakly correlated
96 ZNF786 2 99.0 Highly correlated
97 ZNF44 2 43.0 Weakly correlated
98 ZNF28 2 28.9 Weakly correlated
99 ZNF41 2 99.0 Highly correlated
100 ZNF626 2 0.0 Weakly correlated
101 ZNF549 2 87.0 Moderately correlated
102 ZFP1 1 99.0 Highly correlated
103 ZNF169 1 94.0 Moderately correlated
104 ZNF230 1 28.9 Weakly correlated
105 ZNF544 1 0.0 Weakly correlated
106 ZNF557 1 15.2 Weakly correlated
107 ZNF224 1 69.0 Weakly correlated
108 ZNF225 1 74.0 Weakly correlated
109 ZNF559 1 74.0 Weakly correlated
110 ZNF705E 1 0.0 Weakly correlated
111 ZNF780A 1 43.0 Weakly correlated
112 ZNF33B 1 99.0 Highly correlated
113 ZNF85 1 28.9 Weakly correlated
114 ZNF43 1 43.0 Weakly correlated
115 ZNF749 1 28.9 Weakly correlated
116 ZNF816 1 28.9 Weakly correlated
117 ZNF274 1 99.0 Highly correlated
118 ZNF425 1 94.0 Moderately correlated
119 ZNF222 1 43.0 Weakly correlated
120 ZNF350 1 99.0 Highly correlated
121 ZNF675 1 8.6 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Highly correlated
2 ZIM3 87.0 Moderately correlated
3 ZNF18 160.0 Weakly correlated
4 ZNF197 99.0 Highly correlated
5 ZNF251 94.0 Moderately correlated
6 ZNF263 180.0 Weakly correlated
7 ZNF317 99.0 Highly correlated
8 ZNF479 6.4 Weakly correlated
9 ZNF486 8.6 Weakly correlated
10 ZNF554 99.0 Highly correlated
11 ZNF558 99.0 Highly correlated
12 ZNF680 28.9 Weakly correlated
13 ZNF701 28.9 Weakly correlated
14 ZNF705B 28.9 Weakly correlated
15 ZNF766 43.0 Weakly correlated
16 ZNF84 99.0 Highly correlated
17 ZNF92 28.9 Weakly correlated