ZRdb KZFP & Repeats
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LINE_L1MB5_3END

  • Name
    L1MB5_3END
  • Repbase
    L1MB5
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000272
Description :

ORF2 ends at bp ~675
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctagtatccagaatatataaagaactcttacaactcaacaacaaaaagacaaacaacccaattnnaaaatgggcaaaggacttgaatagacatttctccaaagaagatatacaaatggccaacaagcacatgaaaagatgctcaacatcattagtcattagggaaatgcaaatcaaaaccacaatgagataccacttcacacccactaggatggctataattaaaaaaacggaaaataacaagtgttggcgaggatgtggagaaattggaaccctcgtacattgctggtgggaatgtaaaatggtgcagccgctgtggaaaacagtttggcggttcctcaaaaagttaaacatagaattaccatatgacccagcaattccactcctaggtatatacccaaaagaattgaaaacaggtattcaaacaaanacttgtacacgaatgttcatagcagcactattcacaatagccaaaaggtggaaacaacccaaatgtccatcaacggatgaatggataaacaaaatgtggtatatccatacaatggaatattattcagccataaaaaggaatgaagtactgatacatgctacaacgtggatgaacctcgaaaacattatgctaagtgaaagaagccagacacaaaaggccacatattgtatgattccatttatatgaaatatccagaataggcaaatccatagagacagaaagcagattggtggttgccaggggctggggggaggggggaatggggagtgactgcttaatgggtacggggtttccttttggggtgatgaaaatgttttggaactagatagaggtggtggttgcacaacattgtgaatgtactaaatgccactgaattgtncactttaaaatggttaattttatgttatgtgaatttcacctcaatttaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 447 94.0 Moderately correlated
2 ZNF382 398 99.0 Highly correlated
3 ZNF140 328 99.0 Highly correlated
4 ZNF8 285 99.0 Highly correlated
5 ZNF317 228 99.0 Highly correlated
6 ZNF486 166 8.6 Weakly correlated
7 ZNF394 131 99.0 Highly correlated
8 ZIM3 120 87.0 Moderately correlated
9 ZNF766 111 43.0 Weakly correlated
10 ZNF558 88 99.0 Highly correlated
11 ZNF680 80 28.9 Weakly correlated
12 ZNF263 79 180.0 Weakly correlated
13 ZNF2 72 99.0 Highly correlated
14 ZNF175 66 94.0 Moderately correlated
15 ZNF679 63 28.9 Weakly correlated
16 ZNF705B 60 28.9 Weakly correlated
17 ZFP28 59 99.0 Highly correlated
18 ZNF274 53 99.0 Highly correlated
19 ZNF18 50 160.0 Weakly correlated
20 ZNF248 50 99.0 Highly correlated
21 ZFP37 47 99.0 Highly correlated
22 ZKSCAN1 46 160.0 Weakly correlated
23 ZNF92 42 28.9 Weakly correlated
24 ZNF324 38 99.0 Highly correlated
25 ZNF136 37 74.0 Weakly correlated
26 ZNF705D 37 28.9 Weakly correlated
27 ZNF723 36 15.2 Weakly correlated
28 ZFP69B 35 99.0 Highly correlated
29 ZNF101 35 43.0 Weakly correlated
30 ZNF10 34 99.0 Highly correlated
31 ZNF589 34 28.9 Weakly correlated
32 ZNF554 33 99.0 Highly correlated
33 ZNF610 33 28.9 Weakly correlated
34 ZKSCAN8 27 160.0 Weakly correlated
35 ZNF84 27 99.0 Highly correlated
36 ZNF160 25 74.0 Weakly correlated
37 ZNF534 25 19.6 Weakly correlated
38 ZNF793 23 99.0 Highly correlated
39 ZFP57 22 87.0 Moderately correlated
40 ZNF133 22 99.0 Highly correlated
41 ZNF584 21 99.0 Highly correlated
42 ZNF429 19 28.9 Weakly correlated
43 ZNF441 19 43.0 Weakly correlated
44 ZNF479 18 6.4 Weakly correlated
45 ZNF490 18 43.0 Weakly correlated
46 ZNF597 18 94.0 Moderately correlated
47 ZNF182 17 99.0 Highly correlated
48 ZNF250 17 99.0 Highly correlated
49 ZNF320 16 28.9 Weakly correlated
50 ZNF506 14 28.9 Weakly correlated
51 ZNF528 14 43.0 Weakly correlated
52 ZNF879 13 99.0 Highly correlated
53 ZNF264 12 99.0 Highly correlated
54 ZNF701 12 28.9 Weakly correlated
55 ZNF197 11 99.0 Highly correlated
56 ZNF484 11 99.0 Highly correlated
57 ZNF202 10 160.0 Weakly correlated
58 ZNF41 9 99.0 Highly correlated
59 ZNF485 9 94.0 Moderately correlated
60 ZNF585A 9 99.0 Highly correlated
61 ZNF585B 9 99.0 Highly correlated
62 ZNF735 9 28.9 Weakly correlated
63 ZNF75D 9 94.0 Moderately correlated
64 ZFP69 8 99.0 Highly correlated
65 ZNF28 8 28.9 Weakly correlated
66 ZNF471 8 94.0 Moderately correlated
67 ZNF549 8 87.0 Moderately correlated
68 ZNF682 8 28.9 Weakly correlated
69 ZNF257 7 0.0 Weakly correlated
70 ZNF284 7 43.0 Weakly correlated
71 ZNF287 7 99.0 Highly correlated
72 ZNF780A 7 43.0 Weakly correlated
73 ZNF230 6 28.9 Weakly correlated
74 ZNF425 6 94.0 Moderately correlated
75 ZNF44 6 43.0 Weakly correlated
76 ZNF519 6 19.6 Weakly correlated
77 ZNF547 6 74.0 Weakly correlated
78 ZNF677 6 99.0 Highly correlated
79 ZNF695 6 28.9 Weakly correlated
80 ZNF786 6 99.0 Highly correlated
81 ZNF81 6 99.0 Highly correlated
82 ZNF141 5 43.0 Weakly correlated
83 ZNF169 5 94.0 Moderately correlated
84 ZNF354A 5 99.0 Highly correlated
85 ZNF432 5 99.0 Highly correlated
86 ZKSCAN5 4 160.0 Weakly correlated
87 ZNF154 4 94.0 Moderately correlated
88 ZNF33A 4 99.0 Highly correlated
89 ZNF440 4 28.9 Weakly correlated
90 ZNF567 4 99.0 Highly correlated
91 ZNF641 4 99.0 Highly correlated
92 ZNF792 4 94.0 Moderately correlated
93 ZFP90 3 99.0 Highly correlated
94 ZNF135 3 94.0 Moderately correlated
95 ZNF211 3 94.0 Moderately correlated
96 ZNF445 3 99.0 Highly correlated
97 ZNF468 3 28.9 Weakly correlated
98 ZNF611 3 19.6 Weakly correlated
99 ZNF91 3 6.0 Weakly correlated
100 ZNF224 2 69.0 Weakly correlated
101 ZNF225 2 74.0 Weakly correlated
102 ZNF273 2 28.9 Weakly correlated
103 ZNF333 2 99.0 Highly correlated
104 ZNF334 2 99.0 Highly correlated
105 ZNF337 2 43.0 Weakly correlated
106 ZNF510 2 99.0 Highly correlated
107 ZNF550 2 94.0 Moderately correlated
108 ZNF559 2 74.0 Weakly correlated
109 ZNF573 2 94.0 Moderately correlated
110 ZNF613 2 99.0 Highly correlated
111 ZNF669 2 43.0 Weakly correlated
112 ZNF671 2 94.0 Moderately correlated
113 ZNF707 2 74.0 Weakly correlated
114 ZNF816 2 28.9 Weakly correlated
115 ZNF823 2 43.0 Weakly correlated
116 ZNF845 2 28.9 Weakly correlated
117 ZNF878 2 43.0 Weakly correlated
118 ZFP14 1 99.0 Highly correlated
119 ZFP82 1 99.0 Highly correlated
120 ZNF17 1 69.0 Weakly correlated
121 ZNF189 1 99.0 Highly correlated
122 ZNF267 1 43.0 Weakly correlated
123 ZNF26 1 99.0 Highly correlated
124 ZNF282 1 319.0 Weakly correlated
125 ZNF343 1 74.0 Weakly correlated
126 ZNF347 1 43.0 Weakly correlated
127 ZNF354C 1 99.0 Highly correlated
128 ZNF418 1 43.0 Weakly correlated
129 ZNF420 1 94.0 Moderately correlated
130 ZNF430 1 19.6 Weakly correlated
131 ZNF436 1 180.0 Weakly correlated
132 ZNF560 1 43.0 Weakly correlated
133 ZNF565 1 99.0 Highly correlated
134 ZNF583 1 99.0 Highly correlated
135 ZNF595 1 43.0 Weakly correlated
136 ZNF596 1 94.0 Moderately correlated
137 ZNF630 1 94.0 Moderately correlated
138 ZNF674 1 99.0 Highly correlated
139 ZNF681 1 28.9 Weakly correlated
140 ZNF705E 1 0.0 Weakly correlated
141 ZNF778 1 74.0 Weakly correlated
142 ZNF799 1 43.0 Weakly correlated
143 ZNF7 1 99.0 Highly correlated
144 ZNF805 1 99.0 Highly correlated
145 ZNF808 1 19.6 Weakly correlated
146 ZNF850 1 28.9 Weakly correlated
147 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 410 94.0 Moderately correlated
2 ZNF8 190 99.0 Highly correlated
3 ZNF486 95 8.6 Weakly correlated
4 ZIM3 65 87.0 Moderately correlated
5 ZNF140 63 99.0 Highly correlated
6 ZNF317 45 99.0 Highly correlated
7 ZNF248 41 99.0 Highly correlated
8 ZNF382 37 99.0 Highly correlated
9 ZNF10 33 99.0 Highly correlated
10 ZFP28 27 99.0 Highly correlated
11 ZNF136 26 74.0 Weakly correlated
12 ZNF160 24 74.0 Weakly correlated
13 ZNF558 24 99.0 Highly correlated
14 ZNF84 20 99.0 Highly correlated
15 ZNF723 20 15.2 Weakly correlated
16 ZNF92 20 28.9 Weakly correlated
17 ZNF680 18 28.9 Weakly correlated
18 ZNF101 17 43.0 Weakly correlated
19 ZNF534 16 19.6 Weakly correlated
20 ZNF250 15 99.0 Highly correlated
21 ZNF133 14 99.0 Highly correlated
22 ZNF490 14 43.0 Weakly correlated
23 ZNF263 14 180.0 Weakly correlated
24 ZNF793 11 99.0 Highly correlated
25 ZNF705D 9 28.9 Weakly correlated
26 ZNF879 9 99.0 Highly correlated
27 ZNF18 9 160.0 Weakly correlated
28 ZNF264 9 99.0 Highly correlated
29 ZNF766 9 43.0 Weakly correlated
30 ZNF324 9 99.0 Highly correlated
31 ZNF705B 8 28.9 Weakly correlated
32 ZNF479 7 6.4 Weakly correlated
33 ZFP69 7 99.0 Highly correlated
34 ZNF471 7 94.0 Moderately correlated
35 ZNF585A 7 99.0 Highly correlated
36 ZNF202 6 160.0 Weakly correlated
37 ZNF81 6 99.0 Highly correlated
38 ZNF735 6 28.9 Weakly correlated
39 ZNF2 5 99.0 Highly correlated
40 ZNF485 5 94.0 Moderately correlated
41 ZNF429 5 28.9 Weakly correlated
42 ZNF554 5 99.0 Highly correlated
43 ZNF610 5 28.9 Weakly correlated
44 ZNF44 4 43.0 Weakly correlated
45 ZNF432 4 99.0 Highly correlated
46 ZNF75D 4 94.0 Moderately correlated
47 ZNF701 4 28.9 Weakly correlated
48 ZNF154 4 94.0 Moderately correlated
49 ZNF287 4 99.0 Highly correlated
50 ZNF695 3 28.9 Weakly correlated
51 ZNF506 3 28.9 Weakly correlated
52 ZNF528 3 43.0 Weakly correlated
53 ZNF589 3 28.9 Weakly correlated
54 ZNF679 3 28.9 Weakly correlated
55 ZFP90 3 99.0 Highly correlated
56 ZFP57 3 87.0 Moderately correlated
57 ZNF484 3 99.0 Highly correlated
58 ZNF677 3 99.0 Highly correlated
59 ZNF597 3 94.0 Moderately correlated
60 ZNF440 3 28.9 Weakly correlated
61 ZNF354A 3 99.0 Highly correlated
62 ZNF641 2 99.0 Highly correlated
63 ZNF274 2 99.0 Highly correlated
64 ZNF41 2 99.0 Highly correlated
65 ZNF584 2 99.0 Highly correlated
66 ZNF780A 2 43.0 Weakly correlated
67 ZNF792 2 94.0 Moderately correlated
68 ZNF585B 2 99.0 Highly correlated
69 ZNF337 2 43.0 Weakly correlated
70 ZNF175 2 94.0 Moderately correlated
71 ZNF320 2 28.9 Weakly correlated
72 ZNF257 2 0.0 Weakly correlated
73 ZFP37 1 99.0 Highly correlated
74 ZFP69B 1 99.0 Highly correlated
75 ZNF394 1 99.0 Highly correlated
76 ZNF468 1 28.9 Weakly correlated
77 ZNF169 1 94.0 Moderately correlated
78 ZNF33A 1 99.0 Highly correlated
79 ZFP14 1 99.0 Highly correlated
80 ZNF282 1 319.0 Weakly correlated
81 ZNF7 1 99.0 Highly correlated
82 ZKSCAN1 1 160.0 Weakly correlated
83 ZNF573 1 94.0 Moderately correlated
84 ZNF549 1 87.0 Moderately correlated
85 ZNF28 1 28.9 Weakly correlated
86 ZNF267 1 43.0 Weakly correlated
87 ZKSCAN8 1 160.0 Weakly correlated
88 ZNF681 1 28.9 Weakly correlated
89 ZNF674 1 99.0 Highly correlated
90 ZNF550 1 94.0 Moderately correlated
91 ZNF197 1 99.0 Highly correlated
92 ZNF333 1 99.0 Highly correlated
93 ZNF225 1 74.0 Weakly correlated
94 ZNF816 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF18 160.0 Weakly correlated
2 ZNF251 94.0 Moderately correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF486 8.6 Weakly correlated
5 ZNF558 99.0 Highly correlated
6 ZNF680 28.9 Weakly correlated
7 ZNF723 15.2 Weakly correlated
8 ZNF793 99.0 Highly correlated
9 ZNF84 99.0 Highly correlated
10 ZNF92 28.9 Weakly correlated