ZRdb KZFP & Repeats
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LINE_L1MB4_3END

  • Name
    L1MB4_3END
  • Repbase
    L1MB4
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000270
Description :

ORF2 ends at bp ~675
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
cttgtatccagaatatataaagaactcctacaactcaacaacaaaaaaacaaacaacccaattnaaaaatgggcaaaggacttgaatagacatttctccaaagaagatatacaaatggccaataagcacatgaaaagatgctcaacatcactagtcattagggaaatgcaaatcaaaaccacaatgagataccacttcacacccactaggatggctatnatcaaaaaaacggaaaataacaagtgttggcgaggatgtggagaaattggaaccctcgtgcattgctggtgggaatgtaaaatggtgcagccgctgtggaaaacagtttggcggttcctcaaaaagttaaacatagaattaccatatgacccagcaattccactcctaggtatatacccaaaagaattgaaagcagggactcaaacagatacttgtacaccaatgttcatagcagcattattcacaatagccaaaaggtggaaacaacccaagtgtccataacagatgaatggataaacaaaatgtggtatatacatacaatggaatattattcagccntaaaaaggaatgaaattctgatacatgctacaacatggatgaaccttgaaaacattatgctaagtgaaataagccagacacaaaaggacaaatattgtatgattccacttatatgaggtacctagaataggcaaattcatagagacagaaagtagaatagaggttaccaggggctggggggaggggagaatggggagttattgtttaatgggtacagagtttctgtttgggatgatgaaaaagttctggaaatggatagtggtgatggttgcacaacattgtgaatgtacttaatgccactgaattgtacacttaaaaatggttaaaatggtaaattttatgttatgtatattttaccacaataaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 378 99.0 Highly correlated
2 ZNF251 215 94.0 Moderately correlated
3 ZNF140 199 99.0 Highly correlated
4 ZNF317 151 99.0 Highly correlated
5 ZIM3 119 87.0 Moderately correlated
6 ZNF766 108 43.0 Weakly correlated
7 ZNF558 104 99.0 Highly correlated
8 ZNF394 97 99.0 Highly correlated
9 ZNF175 96 94.0 Moderately correlated
10 ZNF8 88 99.0 Highly correlated
11 ZNF680 55 28.9 Weakly correlated
12 ZFP28 47 99.0 Highly correlated
13 ZNF589 47 28.9 Weakly correlated
14 ZNF160 44 74.0 Weakly correlated
15 ZNF92 44 28.9 Weakly correlated
16 ZNF705B 42 28.9 Weakly correlated
17 ZNF248 40 99.0 Highly correlated
18 ZNF263 39 180.0 Weakly correlated
19 ZNF486 39 8.6 Weakly correlated
20 ZNF679 39 28.9 Weakly correlated
21 ZNF274 38 99.0 Highly correlated
22 ZNF2 36 99.0 Highly correlated
23 ZNF84 35 99.0 Highly correlated
24 ZNF18 34 160.0 Weakly correlated
25 ZFP37 31 99.0 Highly correlated
26 ZNF705D 30 28.9 Weakly correlated
27 ZNF723 30 15.2 Weakly correlated
28 ZNF197 29 99.0 Highly correlated
29 ZNF490 29 43.0 Weakly correlated
30 ZNF101 28 43.0 Weakly correlated
31 ZKSCAN1 27 160.0 Weakly correlated
32 ZKSCAN8 27 160.0 Weakly correlated
33 ZNF136 26 74.0 Weakly correlated
34 ZNF133 25 99.0 Highly correlated
35 ZNF597 25 94.0 Moderately correlated
36 ZNF324 23 99.0 Highly correlated
37 ZNF554 23 99.0 Highly correlated
38 ZNF610 23 28.9 Weakly correlated
39 ZNF479 22 6.4 Weakly correlated
40 ZNF429 21 28.9 Weakly correlated
41 ZNF534 21 19.6 Weakly correlated
42 ZNF584 21 99.0 Highly correlated
43 ZFP69B 18 99.0 Highly correlated
44 ZNF250 18 99.0 Highly correlated
45 ZNF793 17 99.0 Highly correlated
46 ZNF10 16 99.0 Highly correlated
47 ZNF182 15 99.0 Highly correlated
48 ZNF506 15 28.9 Weakly correlated
49 ZNF154 14 94.0 Moderately correlated
50 ZNF441 14 43.0 Weakly correlated
51 ZNF707 11 74.0 Weakly correlated
52 ZNF287 10 99.0 Highly correlated
53 ZNF81 10 99.0 Highly correlated
54 ZNF257 9 0.0 Weakly correlated
55 ZNF547 9 74.0 Weakly correlated
56 ZNF75D 9 94.0 Moderately correlated
57 ZNF284 8 43.0 Weakly correlated
58 ZNF528 8 43.0 Weakly correlated
59 ZFP57 7 87.0 Moderately correlated
60 ZNF320 7 28.9 Weakly correlated
61 ZNF264 6 99.0 Highly correlated
62 ZNF425 6 94.0 Moderately correlated
63 ZNF585A 6 99.0 Highly correlated
64 ZNF671 6 94.0 Moderately correlated
65 ZNF701 6 28.9 Weakly correlated
66 ZNF879 6 99.0 Highly correlated
67 ZFP90 5 99.0 Highly correlated
68 ZNF28 5 28.9 Weakly correlated
69 ZNF354A 5 99.0 Highly correlated
70 ZNF471 5 94.0 Moderately correlated
71 ZNF485 5 94.0 Moderately correlated
72 ZNF695 5 28.9 Weakly correlated
73 ZNF716 5 19.6 Weakly correlated
74 ZFP69 4 99.0 Highly correlated
75 ZNF17 4 69.0 Weakly correlated
76 ZNF202 4 160.0 Weakly correlated
77 ZNF440 4 28.9 Weakly correlated
78 ZNF735 4 28.9 Weakly correlated
79 ZNF169 3 94.0 Moderately correlated
80 ZNF224 3 69.0 Weakly correlated
81 ZNF30 3 94.0 Moderately correlated
82 ZNF41 3 99.0 Highly correlated
83 ZNF43 3 43.0 Weakly correlated
84 ZNF674 3 99.0 Highly correlated
85 ZNF682 3 28.9 Weakly correlated
86 ZNF778 3 74.0 Weakly correlated
87 ZNF786 3 99.0 Highly correlated
88 ZNF878 3 43.0 Weakly correlated
89 ZNF135 2 94.0 Moderately correlated
90 ZNF189 2 99.0 Highly correlated
91 ZNF211 2 94.0 Moderately correlated
92 ZNF222 2 43.0 Weakly correlated
93 ZNF225 2 74.0 Weakly correlated
94 ZNF26 2 99.0 Highly correlated
95 ZNF331 2 94.0 Moderately correlated
96 ZNF337 2 43.0 Weakly correlated
97 ZNF44 2 43.0 Weakly correlated
98 ZNF468 2 28.9 Weakly correlated
99 ZNF484 2 99.0 Highly correlated
100 ZNF519 2 19.6 Weakly correlated
101 ZNF549 2 87.0 Moderately correlated
102 ZNF550 2 94.0 Moderately correlated
103 ZNF563 2 28.9 Weakly correlated
104 ZNF567 2 99.0 Highly correlated
105 ZNF568 2 99.0 Highly correlated
106 ZNF583 2 99.0 Highly correlated
107 ZNF611 2 19.6 Weakly correlated
108 ZNF730 2 19.6 Weakly correlated
109 ZNF789 2 99.0 Highly correlated
110 ZNF808 2 19.6 Weakly correlated
111 ZNF823 2 43.0 Weakly correlated
112 ZFP14 1 99.0 Highly correlated
113 ZFP30 1 99.0 Highly correlated
114 ZKSCAN5 1 160.0 Weakly correlated
115 ZNF184 1 99.0 Highly correlated
116 ZNF230 1 28.9 Weakly correlated
117 ZNF282 1 319.0 Weakly correlated
118 ZNF33A 1 99.0 Highly correlated
119 ZNF33B 1 99.0 Highly correlated
120 ZNF347 1 43.0 Weakly correlated
121 ZNF354B 1 99.0 Highly correlated
122 ZNF354C 1 99.0 Highly correlated
123 ZNF432 1 99.0 Highly correlated
124 ZNF433 1 43.0 Weakly correlated
125 ZNF436 1 180.0 Weakly correlated
126 ZNF442 1 43.0 Weakly correlated
127 ZNF445 1 99.0 Highly correlated
128 ZNF460 1 74.0 Weakly correlated
129 ZNF470 1 99.0 Highly correlated
130 ZNF529 1 99.0 Highly correlated
131 ZNF557 1 15.2 Weakly correlated
132 ZNF562 1 28.9 Weakly correlated
133 ZNF569 1 99.0 Highly correlated
134 ZNF585B 1 99.0 Highly correlated
135 ZNF616 1 43.0 Weakly correlated
136 ZNF627 1 74.0 Weakly correlated
137 ZNF630 1 94.0 Moderately correlated
138 ZNF649 1 28.9 Weakly correlated
139 ZNF677 1 99.0 Highly correlated
140 ZNF705E 1 0.0 Weakly correlated
141 ZNF747 1 43.0 Weakly correlated
142 ZNF780A 1 43.0 Weakly correlated
143 ZNF782 1 99.0 Highly correlated
144 ZNF791 1 87.0 Moderately correlated
145 ZNF792 1 94.0 Moderately correlated
146 ZNF799 1 43.0 Weakly correlated
147 ZNF816 1 28.9 Weakly correlated
148 ZNF845 1 28.9 Weakly correlated
149 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 182 94.0 Moderately correlated
2 ZIM3 75 87.0 Moderately correlated
3 ZNF8 69 99.0 Highly correlated
4 ZNF140 45 99.0 Highly correlated
5 ZNF558 39 99.0 Highly correlated
6 ZNF160 38 74.0 Weakly correlated
7 ZNF248 33 99.0 Highly correlated
8 ZNF84 31 99.0 Highly correlated
9 ZNF317 25 99.0 Highly correlated
10 ZNF382 24 99.0 Highly correlated
11 ZNF92 23 28.9 Weakly correlated
12 ZFP28 21 99.0 Highly correlated
13 ZNF136 20 74.0 Weakly correlated
14 ZNF766 19 43.0 Weakly correlated
15 ZNF490 18 43.0 Weakly correlated
16 ZNF250 18 99.0 Highly correlated
17 ZNF680 17 28.9 Weakly correlated
18 ZNF486 17 8.6 Weakly correlated
19 ZNF133 15 99.0 Highly correlated
20 ZNF534 14 19.6 Weakly correlated
21 ZNF10 13 99.0 Highly correlated
22 ZNF154 13 94.0 Moderately correlated
23 ZNF101 12 43.0 Weakly correlated
24 ZNF723 12 15.2 Weakly correlated
25 ZNF324 10 99.0 Highly correlated
26 ZNF81 9 99.0 Highly correlated
27 ZNF479 9 6.4 Weakly correlated
28 ZNF793 8 99.0 Highly correlated
29 ZNF287 6 99.0 Highly correlated
30 ZNF705B 6 28.9 Weakly correlated
31 ZNF879 6 99.0 Highly correlated
32 ZNF18 6 160.0 Weakly correlated
33 ZNF585A 5 99.0 Highly correlated
34 ZNF705D 5 28.9 Weakly correlated
35 ZNF735 4 28.9 Weakly correlated
36 ZNF506 4 28.9 Weakly correlated
37 ZNF695 4 28.9 Weakly correlated
38 ZNF263 4 180.0 Weakly correlated
39 ZNF671 3 94.0 Moderately correlated
40 ZKSCAN8 3 160.0 Weakly correlated
41 ZNF674 3 99.0 Highly correlated
42 ZNF264 3 99.0 Highly correlated
43 ZNF716 3 19.6 Weakly correlated
44 ZKSCAN1 3 160.0 Weakly correlated
45 ZFP90 3 99.0 Highly correlated
46 ZNF354A 3 99.0 Highly correlated
47 ZNF589 3 28.9 Weakly correlated
48 ZNF197 3 99.0 Highly correlated
49 ZNF471 3 94.0 Moderately correlated
50 ZNF75D 3 94.0 Moderately correlated
51 ZNF429 3 28.9 Weakly correlated
52 ZNF567 2 99.0 Highly correlated
53 ZNF337 2 43.0 Weakly correlated
54 ZNF610 2 28.9 Weakly correlated
55 ZFP57 2 87.0 Moderately correlated
56 ZNF679 2 28.9 Weakly correlated
57 ZNF169 2 94.0 Moderately correlated
58 ZNF440 2 28.9 Weakly correlated
59 ZNF584 2 99.0 Highly correlated
60 ZNF554 2 99.0 Highly correlated
61 ZNF485 2 94.0 Moderately correlated
62 ZNF550 2 94.0 Moderately correlated
63 ZNF394 2 99.0 Highly correlated
64 ZNF425 2 94.0 Moderately correlated
65 ZNF468 2 28.9 Weakly correlated
66 ZNF528 2 43.0 Weakly correlated
67 ZFP14 1 99.0 Highly correlated
68 ZNF320 1 28.9 Weakly correlated
69 ZNF224 1 69.0 Weakly correlated
70 ZNF627 1 74.0 Weakly correlated
71 ZNF782 1 99.0 Highly correlated
72 ZNF789 1 99.0 Highly correlated
73 ZNF705E 1 0.0 Weakly correlated
74 ZFP37 1 99.0 Highly correlated
75 ZNF211 1 94.0 Moderately correlated
76 ZNF484 1 99.0 Highly correlated
77 ZNF585B 1 99.0 Highly correlated
78 ZNF597 1 94.0 Moderately correlated
79 ZNF44 1 43.0 Weakly correlated
80 ZNF257 1 0.0 Weakly correlated
81 ZNF225 1 74.0 Weakly correlated
82 ZFP69 1 99.0 Highly correlated
83 ZNF707 1 74.0 Weakly correlated
84 ZNF432 1 99.0 Highly correlated
85 ZNF354B 1 99.0 Highly correlated
86 ZNF274 1 99.0 Highly correlated
87 ZNF282 1 319.0 Weakly correlated
88 ZKSCAN5 1 160.0 Weakly correlated
89 ZNF433 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Moderately correlated
2 ZNF101 43.0 Weakly correlated
3 ZNF18 160.0 Weakly correlated
4 ZNF251 94.0 Moderately correlated
5 ZNF486 8.6 Weakly correlated
6 ZNF558 99.0 Highly correlated
7 ZNF680 28.9 Weakly correlated
8 ZNF705B 28.9 Weakly correlated
9 ZNF766 43.0 Weakly correlated
10 ZNF793 99.0 Highly correlated
11 ZNF84 99.0 Highly correlated
12 ZNF92 28.9 Weakly correlated