ZRdb KZFP & Repeats
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LINE_L1MB3_3END

  • Name
    L1MB3_3END
  • Repbase
    L1MB3
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000269
Description :

ORF2 ends at bp ~675
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaatatccagaatatataaagaactcctacaactcaacaacaaaaaaacaaacaacccgattnaaaaatgggcaaaggacttgaatagacatttctccaaagaagatatacaaatggccaataagcacatgaaaagatgctcaacatcactaatcattagggaaatgcaaatcaaaaccacaatgagataccacctcacacccattaggatggctactatcaaaaaaacagaaaataacaagtgttggcgaggatgtggagaaattggaacccttgtgcactgctggtgggaatgtaaaatggtgcagccgctgtggaaaacagtatggcggttcctcaaaaaattaaaaatagaattaccatatgatccagcaattccacttctgggtatatacccaaaagaattgaaagcagggnctcgaanagatatttgtacacccatgttcatagcagcattattcacaatagccaaaaggtggaagcaacccaagtgtccatcgacggatgaatggataaacaaaatgtggtatatacatacaatggaatattattcagccttaaaaaggaaggaaattctgacacatgctacaacatggatgaaccttgaggacattatgctaagtgaaataagccagtcacaaaaggacaaatactgtatgattccacttatatgaggtacctagagtagtcaaattcatagagacagaaagtagaatggtggttgccaggggctggggggaggggggaatggggagttattgtttaatgggtacagagtttcagtttnggaagatgaaaaagttctggagatggatggtggtgatggttgcacaacaatgtgaatgtacttaatgccactgaactgtacacttaaaaatggttaagatggtaaattttatgttatgtatattttaccacaattaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 906 94.0 Moderately correlated
2 ZNF382 611 99.0 Highly correlated
3 ZNF394 203 99.0 Highly correlated
4 ZNF766 195 43.0 Weakly correlated
5 ZNF263 172 180.0 Weakly correlated
6 ZNF317 171 99.0 Highly correlated
7 ZNF8 169 99.0 Highly correlated
8 ZIM3 139 87.0 Moderately correlated
9 ZNF486 137 8.6 Weakly correlated
10 ZNF18 126 160.0 Weakly correlated
11 ZNF2 125 99.0 Highly correlated
12 ZFP37 124 99.0 Highly correlated
13 ZNF558 123 99.0 Highly correlated
14 ZNF479 111 6.4 Weakly correlated
15 ZNF324 92 99.0 Highly correlated
16 ZNF679 88 28.9 Weakly correlated
17 ZNF723 86 15.2 Weakly correlated
18 ZNF248 83 99.0 Highly correlated
19 ZNF92 83 28.9 Weakly correlated
20 ZNF680 81 28.9 Weakly correlated
21 ZFP69B 80 99.0 Highly correlated
22 ZNF101 78 43.0 Weakly correlated
23 ZNF175 74 94.0 Moderately correlated
24 ZNF589 70 28.9 Weakly correlated
25 ZNF610 66 28.9 Weakly correlated
26 ZFP57 63 87.0 Moderately correlated
27 ZKSCAN1 61 160.0 Weakly correlated
28 ZNF140 61 99.0 Highly correlated
29 ZNF160 61 74.0 Weakly correlated
30 ZNF490 60 43.0 Weakly correlated
31 ZNF597 54 94.0 Moderately correlated
32 ZNF84 52 99.0 Highly correlated
33 ZNF793 51 99.0 Highly correlated
34 ZNF705B 48 28.9 Weakly correlated
35 ZNF136 47 74.0 Weakly correlated
36 ZNF320 46 28.9 Weakly correlated
37 ZKSCAN8 45 160.0 Weakly correlated
38 ZNF197 43 99.0 Highly correlated
39 ZNF554 40 99.0 Highly correlated
40 ZNF534 38 19.6 Weakly correlated
41 ZNF584 38 99.0 Highly correlated
42 ZNF133 37 99.0 Highly correlated
43 ZNF429 37 28.9 Weakly correlated
44 ZNF257 36 0.0 Weakly correlated
45 ZNF250 32 99.0 Highly correlated
46 ZNF528 30 43.0 Weakly correlated
47 ZNF705D 30 28.9 Weakly correlated
48 ZNF441 29 43.0 Weakly correlated
49 ZNF506 26 28.9 Weakly correlated
50 ZFP28 25 99.0 Highly correlated
51 ZNF182 25 99.0 Highly correlated
52 ZNF81 24 99.0 Highly correlated
53 ZNF274 23 99.0 Highly correlated
54 ZNF585A 22 99.0 Highly correlated
55 ZNF287 20 99.0 Highly correlated
56 ZNF547 20 74.0 Weakly correlated
57 ZNF701 20 28.9 Weakly correlated
58 ZNF792 20 94.0 Moderately correlated
59 ZNF485 19 94.0 Moderately correlated
60 ZNF585B 19 99.0 Highly correlated
61 ZNF154 16 94.0 Moderately correlated
62 ZNF337 16 43.0 Weakly correlated
63 ZNF707 16 74.0 Weakly correlated
64 ZNF75D 16 94.0 Moderately correlated
65 ZNF28 15 28.9 Weakly correlated
66 ZNF425 15 94.0 Moderately correlated
67 ZNF519 15 19.6 Weakly correlated
68 ZNF641 15 99.0 Highly correlated
69 ZNF671 15 94.0 Moderately correlated
70 ZNF264 14 99.0 Highly correlated
71 ZNF468 14 28.9 Weakly correlated
72 ZNF354A 13 99.0 Highly correlated
73 ZNF695 13 28.9 Weakly correlated
74 ZNF735 13 28.9 Weakly correlated
75 ZNF823 10 43.0 Weakly correlated
76 ZNF331 9 94.0 Moderately correlated
77 ZNF778 9 74.0 Weakly correlated
78 ZFP14 8 99.0 Highly correlated
79 ZNF141 8 43.0 Weakly correlated
80 ZNF202 8 160.0 Weakly correlated
81 ZNF471 8 94.0 Moderately correlated
82 ZNF91 8 6.0 Weakly correlated
83 ZNF169 7 94.0 Moderately correlated
84 ZNF26 7 99.0 Highly correlated
85 ZNF44 7 43.0 Weakly correlated
86 ZNF454 7 99.0 Highly correlated
87 ZNF677 7 99.0 Highly correlated
88 ZNF879 7 99.0 Highly correlated
89 ZNF93 7 8.6 Weakly correlated
90 ZNF284 6 43.0 Weakly correlated
91 ZNF440 6 28.9 Weakly correlated
92 ZNF674 6 99.0 Highly correlated
93 ZNF682 6 28.9 Weakly correlated
94 ZNF10 5 99.0 Highly correlated
95 ZNF17 5 69.0 Weakly correlated
96 ZNF273 5 28.9 Weakly correlated
97 ZNF30 5 94.0 Moderately correlated
98 ZNF347 5 43.0 Weakly correlated
99 ZNF41 5 99.0 Highly correlated
100 ZNF549 5 87.0 Moderately correlated
101 ZNF583 5 99.0 Highly correlated
102 ZNF135 4 94.0 Moderately correlated
103 ZNF282 4 319.0 Weakly correlated
104 ZNF334 4 99.0 Highly correlated
105 ZNF445 4 99.0 Highly correlated
106 ZNF559 4 74.0 Weakly correlated
107 ZFP69 3 99.0 Highly correlated
108 ZKSCAN5 3 160.0 Weakly correlated
109 ZNF211 3 94.0 Moderately correlated
110 ZNF432 3 99.0 Highly correlated
111 ZNF433 3 43.0 Weakly correlated
112 ZNF484 3 99.0 Highly correlated
113 ZNF563 3 28.9 Weakly correlated
114 ZNF614 3 99.0 Highly correlated
115 ZNF736 3 43.0 Weakly correlated
116 ZNF786 3 99.0 Highly correlated
117 ZNF85 3 28.9 Weakly correlated
118 ZFP30 2 99.0 Highly correlated
119 ZIK1 2 87.0 Moderately correlated
120 ZNF114 2 28.9 Weakly correlated
121 ZNF14 2 69.0 Weakly correlated
122 ZNF224 2 69.0 Weakly correlated
123 ZNF283 2 99.0 Highly correlated
124 ZNF33A 2 99.0 Highly correlated
125 ZNF350 2 99.0 Highly correlated
126 ZNF420 2 94.0 Moderately correlated
127 ZNF436 2 180.0 Weakly correlated
128 ZNF43 2 43.0 Weakly correlated
129 ZNF480 2 43.0 Weakly correlated
130 ZNF483 2 99.0 Highly correlated
131 ZNF500 2 160.0 Weakly correlated
132 ZNF530 2 28.9 Weakly correlated
133 ZNF573 2 94.0 Moderately correlated
134 ZNF578 2 15.2 Weakly correlated
135 ZNF605 2 99.0 Highly correlated
136 ZNF616 2 43.0 Weakly correlated
137 ZNF624 2 99.0 Highly correlated
138 ZNF66 2 0.0 Weakly correlated
139 ZNF699 2 99.0 Highly correlated
140 ZNF700 2 28.9 Weakly correlated
141 ZNF75A 2 94.0 Moderately correlated
142 ZNF77 2 87.0 Moderately correlated
143 ZNF780A 2 43.0 Weakly correlated
144 ZNF799 2 43.0 Weakly correlated
145 ZNF7 2 99.0 Highly correlated
146 ZNF816 2 28.9 Weakly correlated
147 ZNF124 1 43.0 Weakly correlated
148 ZNF157 1 99.0 Highly correlated
149 ZNF189 1 99.0 Highly correlated
150 ZNF19 1 99.0 Highly correlated
151 ZNF222 1 43.0 Weakly correlated
152 ZNF230 1 28.9 Weakly correlated
153 ZNF302 1 43.0 Weakly correlated
154 ZNF304 1 99.0 Highly correlated
155 ZNF343 1 74.0 Weakly correlated
156 ZNF354C 1 99.0 Highly correlated
157 ZNF417 1 28.9 Weakly correlated
158 ZNF418 1 43.0 Weakly correlated
159 ZNF430 1 19.6 Weakly correlated
160 ZNF510 1 99.0 Highly correlated
161 ZNF529 1 99.0 Highly correlated
162 ZNF544 1 0.0 Weakly correlated
163 ZNF555 1 94.0 Moderately correlated
164 ZNF557 1 15.2 Weakly correlated
165 ZNF565 1 99.0 Highly correlated
166 ZNF567 1 99.0 Highly correlated
167 ZNF568 1 99.0 Highly correlated
168 ZNF577 1 94.0 Moderately correlated
169 ZNF587 1 28.9 Weakly correlated
170 ZNF627 1 74.0 Weakly correlated
171 ZNF658 1 99.0 Highly correlated
172 ZNF727 1 19.6 Weakly correlated
173 ZNF765 1 8.6 Weakly correlated
174 ZNF782 1 99.0 Highly correlated
175 ZNF789 1 99.0 Highly correlated
176 ZNF791 1 87.0 Moderately correlated
177 ZNF808 1 19.6 Weakly correlated
178 ZNF845 1 28.9 Weakly correlated
179 ZNF878 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 817 94.0 Moderately correlated
2 ZNF8 112 99.0 Highly correlated
3 ZNF479 96 6.4 Weakly correlated
4 ZNF486 74 8.6 Weakly correlated
5 ZIM3 73 87.0 Moderately correlated
6 ZNF248 72 99.0 Highly correlated
7 ZNF160 58 74.0 Weakly correlated
8 ZNF382 51 99.0 Highly correlated
9 ZNF84 45 99.0 Highly correlated
10 ZNF723 44 15.2 Weakly correlated
11 ZNF558 42 99.0 Highly correlated
12 ZNF136 39 74.0 Weakly correlated
13 ZNF101 37 43.0 Weakly correlated
14 ZNF490 33 43.0 Weakly correlated
15 ZNF92 31 28.9 Weakly correlated
16 ZNF250 30 99.0 Highly correlated
17 ZNF263 30 180.0 Weakly correlated
18 ZNF317 25 99.0 Highly correlated
19 ZNF81 23 99.0 Highly correlated
20 ZNF793 23 99.0 Highly correlated
21 ZNF534 21 19.6 Weakly correlated
22 ZNF140 19 99.0 Highly correlated
23 ZNF680 19 28.9 Weakly correlated
24 ZNF324 19 99.0 Highly correlated
25 ZNF18 17 160.0 Weakly correlated
26 ZNF766 17 43.0 Weakly correlated
27 ZFP57 16 87.0 Moderately correlated
28 ZNF154 15 94.0 Moderately correlated
29 ZNF528 15 43.0 Weakly correlated
30 ZNF320 13 28.9 Weakly correlated
31 ZNF133 12 99.0 Highly correlated
32 ZNF585A 11 99.0 Highly correlated
33 ZFP28 9 99.0 Highly correlated
34 ZNF485 9 94.0 Moderately correlated
35 ZNF695 9 28.9 Weakly correlated
36 ZNF705B 9 28.9 Weakly correlated
37 ZNF354A 9 99.0 Highly correlated
38 ZNF287 9 99.0 Highly correlated
39 ZNF337 9 43.0 Weakly correlated
40 ZNF2 8 99.0 Highly correlated
41 ZNF701 8 28.9 Weakly correlated
42 ZNF468 8 28.9 Weakly correlated
43 ZFP14 7 99.0 Highly correlated
44 ZNF75D 7 94.0 Moderately correlated
45 ZNF264 6 99.0 Highly correlated
46 ZNF554 6 99.0 Highly correlated
47 ZNF44 6 43.0 Weakly correlated
48 ZNF597 6 94.0 Moderately correlated
49 ZNF175 6 94.0 Moderately correlated
50 ZNF677 6 99.0 Highly correlated
51 ZNF705D 6 28.9 Weakly correlated
52 ZNF585B 6 99.0 Highly correlated
53 ZFP37 5 99.0 Highly correlated
54 ZNF879 5 99.0 Highly correlated
55 ZNF394 5 99.0 Highly correlated
56 ZNF610 5 28.9 Weakly correlated
57 ZNF641 4 99.0 Highly correlated
58 ZNF202 4 160.0 Weakly correlated
59 ZNF584 4 99.0 Highly correlated
60 ZNF671 4 94.0 Moderately correlated
61 ZNF26 4 99.0 Highly correlated
62 ZKSCAN1 3 160.0 Weakly correlated
63 ZNF10 3 99.0 Highly correlated
64 ZNF347 3 43.0 Weakly correlated
65 ZNF471 3 94.0 Moderately correlated
66 ZNF440 3 28.9 Weakly correlated
67 ZNF257 3 0.0 Weakly correlated
68 ZNF735 3 28.9 Weakly correlated
69 ZNF792 3 94.0 Moderately correlated
70 ZNF197 3 99.0 Highly correlated
71 ZNF433 3 43.0 Weakly correlated
72 ZNF679 3 28.9 Weakly correlated
73 ZNF707 3 74.0 Weakly correlated
74 ZKSCAN8 2 160.0 Weakly correlated
75 ZNF141 2 43.0 Weakly correlated
76 ZNF41 2 99.0 Highly correlated
77 ZNF589 2 28.9 Weakly correlated
78 ZNF334 2 99.0 Highly correlated
79 ZNF350 2 99.0 Highly correlated
80 ZNF506 2 28.9 Weakly correlated
81 ZNF674 2 99.0 Highly correlated
82 ZNF274 2 99.0 Highly correlated
83 ZNF7 2 99.0 Highly correlated
84 ZFP69B 1 99.0 Highly correlated
85 ZFP69 1 99.0 Highly correlated
86 ZKSCAN5 1 160.0 Weakly correlated
87 ZNF432 1 99.0 Highly correlated
88 ZNF780A 1 43.0 Weakly correlated
89 ZNF302 1 43.0 Weakly correlated
90 ZNF778 1 74.0 Weakly correlated
91 ZNF786 1 99.0 Highly correlated
92 ZNF282 1 319.0 Weakly correlated
93 ZNF343 1 74.0 Weakly correlated
94 ZNF530 1 28.9 Weakly correlated
95 ZNF587 1 28.9 Weakly correlated
96 ZNF736 1 43.0 Weakly correlated
97 ZNF417 1 28.9 Weakly correlated
98 ZNF480 1 43.0 Weakly correlated
99 ZNF789 1 99.0 Highly correlated
100 ZNF28 1 28.9 Weakly correlated
101 ZNF33A 1 99.0 Highly correlated
102 ZNF425 1 94.0 Moderately correlated
103 ZNF429 1 28.9 Weakly correlated
104 ZNF75A 1 94.0 Moderately correlated
105 ZNF823 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP14 99.0 Highly correlated
2 ZFP57 87.0 Moderately correlated
3 ZNF140 99.0 Highly correlated
4 ZNF251 94.0 Moderately correlated
5 ZNF263 180.0 Weakly correlated
6 ZNF2 99.0 Highly correlated
7 ZNF320 28.9 Weakly correlated
8 ZNF479 6.4 Weakly correlated
9 ZNF486 8.6 Weakly correlated
10 ZNF528 43.0 Weakly correlated
11 ZNF554 99.0 Highly correlated
12 ZNF558 99.0 Highly correlated
13 ZNF597 94.0 Moderately correlated
14 ZNF680 28.9 Weakly correlated
15 ZNF701 28.9 Weakly correlated
16 ZNF705B 28.9 Weakly correlated
17 ZNF723 15.2 Weakly correlated
18 ZNF75D 94.0 Moderately correlated
19 ZNF793 99.0 Highly correlated
20 ZNF84 99.0 Highly correlated
21 ZNF92 28.9 Weakly correlated