ZRdb KZFP & Repeats
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LINE_L1MB2_3END

  • Name
    L1MB2_3END
  • Repbase
    L1MB2
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000268
Description :

ORF2 ends at bp ~675
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaatatccagaatatataaagaactcctacaactcaacaacaaaaaaacaaataacccgattnaaaaatgggcaaaggacttgaatagacatttctccaaagaagatatacaaatggccaacaagcatatgaaaagatgctcaacatcactaatcattagggaaatgcaaatcaaaaccacaatgagatatcacctcacacccattaggatggctactatcaaaaaaacagaaaataacaagtgttggcgaggatgtggagaaattggaacccttgtgcactgttggtgggaatgtaaaatggtgcagccgctatggaaaacagtatggcggttcctcaaaaaattaaaaatagaattaccatatgatccagcaatcccacttctgggtatatatccaaaagaattgaaagcagggtctcgaagagatatttgcacacccatgttcatagcagcattattcacaatagccaagaggtggaagcaacccaagtgtccatcgacggatgaatggataaacaaaatgtggtatatacatacaatggaatattattcagccttaaaaaggaaggaaattctgncacatgctacaacatggatgaaccttgaggacattatgctaagtgaaataagccagtcacaaaaagacaaatactgtatgattccacttatatgaggtatctagagtagtcaaattcatagagacagaaagtagaatggtggttgccaggggctggggggagggggaaatggggagttgttgtttaatgggtatagagtttcagttttgcaagatgaaaaagttctggagatcggttgcacaacaatgtgaatatacttaacactactgaactgtacacttaaaaatggttaagatggtaaattttatgttatgtgtnttttaccacaattaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 376 94.0 Moderately correlated
2 ZNF382 350 99.0 Highly correlated
3 ZIM3 100 87.0 Moderately correlated
4 ZNF394 96 99.0 Highly correlated
5 ZNF766 90 43.0 Weakly correlated
6 ZNF317 87 99.0 Highly correlated
7 ZNF8 78 99.0 Highly correlated
8 ZNF263 74 180.0 Weakly correlated
9 ZNF2 60 99.0 Highly correlated
10 ZNF18 59 160.0 Weakly correlated
11 ZNF558 55 99.0 Highly correlated
12 ZNF101 51 43.0 Weakly correlated
13 ZNF248 51 99.0 Highly correlated
14 ZFP37 50 99.0 Highly correlated
15 ZNF679 46 28.9 Weakly correlated
16 ZNF680 45 28.9 Weakly correlated
17 ZNF92 44 28.9 Weakly correlated
18 ZNF160 43 74.0 Weakly correlated
19 ZNF490 42 43.0 Weakly correlated
20 ZNF597 42 94.0 Moderately correlated
21 ZNF723 42 15.2 Weakly correlated
22 ZNF324 40 99.0 Highly correlated
23 ZNF486 40 8.6 Weakly correlated
24 ZNF175 39 94.0 Moderately correlated
25 ZNF429 35 28.9 Weakly correlated
26 ZNF705B 35 28.9 Weakly correlated
27 ZKSCAN1 33 160.0 Weakly correlated
28 ZNF136 32 74.0 Weakly correlated
29 ZNF84 31 99.0 Highly correlated
30 ZFP69B 30 99.0 Highly correlated
31 ZNF589 30 28.9 Weakly correlated
32 ZNF610 27 28.9 Weakly correlated
33 ZNF793 27 99.0 Highly correlated
34 ZNF534 23 19.6 Weakly correlated
35 ZNF250 22 99.0 Highly correlated
36 ZNF705D 22 28.9 Weakly correlated
37 ZNF81 22 99.0 Highly correlated
38 ZNF133 20 99.0 Highly correlated
39 ZNF584 20 99.0 Highly correlated
40 ZNF197 18 99.0 Highly correlated
41 ZNF479 18 6.4 Weakly correlated
42 ZNF140 17 99.0 Highly correlated
43 ZNF320 16 28.9 Weakly correlated
44 ZKSCAN8 15 160.0 Weakly correlated
45 ZNF182 14 99.0 Highly correlated
46 ZNF471 14 94.0 Moderately correlated
47 ZNF585A 14 99.0 Highly correlated
48 ZNF75D 14 94.0 Moderately correlated
49 ZFP57 12 87.0 Moderately correlated
50 ZNF274 12 99.0 Highly correlated
51 ZNF441 12 43.0 Weakly correlated
52 ZNF480 12 43.0 Weakly correlated
53 ZNF701 12 28.9 Weakly correlated
54 ZNF257 11 0.0 Weakly correlated
55 ZNF506 11 28.9 Weakly correlated
56 ZNF554 9 99.0 Highly correlated
57 ZNF641 9 99.0 Highly correlated
58 ZNF264 8 99.0 Highly correlated
59 ZNF331 8 94.0 Moderately correlated
60 ZNF707 8 74.0 Weakly correlated
61 ZNF528 7 43.0 Weakly correlated
62 ZFP28 6 99.0 Highly correlated
63 ZNF26 6 99.0 Highly correlated
64 ZNF28 6 28.9 Weakly correlated
65 ZNF485 6 94.0 Moderately correlated
66 ZNF519 6 19.6 Weakly correlated
67 ZNF735 6 28.9 Weakly correlated
68 ZNF792 6 94.0 Moderately correlated
69 ZNF284 5 43.0 Weakly correlated
70 ZNF337 5 43.0 Weakly correlated
71 ZNF141 4 43.0 Weakly correlated
72 ZNF202 4 160.0 Weakly correlated
73 ZNF211 4 94.0 Moderately correlated
74 ZNF33A 4 99.0 Highly correlated
75 ZNF41 4 99.0 Highly correlated
76 ZNF547 4 74.0 Weakly correlated
77 ZNF585B 4 99.0 Highly correlated
78 ZNF695 4 28.9 Weakly correlated
79 ZNF808 4 19.6 Weakly correlated
80 ZNF823 4 43.0 Weakly correlated
81 ZNF879 4 99.0 Highly correlated
82 ZNF91 4 6.0 Weakly correlated
83 ZNF17 3 69.0 Weakly correlated
84 ZNF234 3 99.0 Highly correlated
85 ZNF287 3 99.0 Highly correlated
86 ZNF334 3 99.0 Highly correlated
87 ZNF354A 3 99.0 Highly correlated
88 ZNF425 3 94.0 Moderately correlated
89 ZNF468 3 28.9 Weakly correlated
90 ZNF549 3 87.0 Moderately correlated
91 ZNF557 3 15.2 Weakly correlated
92 ZNF583 3 99.0 Highly correlated
93 ZNF716 3 19.6 Weakly correlated
94 ZNF778 3 74.0 Weakly correlated
95 ZNF786 3 99.0 Highly correlated
96 ZKSCAN5 2 160.0 Weakly correlated
97 ZNF10 2 99.0 Highly correlated
98 ZNF124 2 43.0 Weakly correlated
99 ZNF347 2 43.0 Weakly correlated
100 ZNF350 2 99.0 Highly correlated
101 ZNF354C 2 99.0 Highly correlated
102 ZNF44 2 43.0 Weakly correlated
103 ZNF454 2 99.0 Highly correlated
104 ZNF671 2 94.0 Moderately correlated
105 ZNF677 2 99.0 Highly correlated
106 ZNF684 2 99.0 Highly correlated
107 ZFP14 1 99.0 Highly correlated
108 ZIK1 1 87.0 Moderately correlated
109 ZNF135 1 94.0 Moderately correlated
110 ZNF154 1 94.0 Moderately correlated
111 ZNF169 1 94.0 Moderately correlated
112 ZNF189 1 99.0 Highly correlated
113 ZNF226 1 99.0 Highly correlated
114 ZNF282 1 319.0 Weakly correlated
115 ZNF283 1 99.0 Highly correlated
116 ZNF436 1 180.0 Weakly correlated
117 ZNF439 1 8.6 Weakly correlated
118 ZNF43 1 43.0 Weakly correlated
119 ZNF559 1 74.0 Weakly correlated
120 ZNF563 1 28.9 Weakly correlated
121 ZNF567 1 99.0 Highly correlated
122 ZNF573 1 94.0 Moderately correlated
123 ZNF605 1 99.0 Highly correlated
124 ZNF613 1 99.0 Highly correlated
125 ZNF614 1 99.0 Highly correlated
126 ZNF616 1 43.0 Weakly correlated
127 ZNF627 1 74.0 Weakly correlated
128 ZNF674 1 99.0 Highly correlated
129 ZNF682 1 28.9 Weakly correlated
130 ZNF700 1 28.9 Weakly correlated
131 ZNF727 1 19.6 Weakly correlated
132 ZNF736 1 43.0 Weakly correlated
133 ZNF75A 1 94.0 Moderately correlated
134 ZNF777 1 319.0 Weakly correlated
135 ZNF799 1 43.0 Weakly correlated
136 ZNF7 1 99.0 Highly correlated
137 ZNF845 1 28.9 Weakly correlated
138 ZNF850 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 333 94.0 Moderately correlated
2 ZNF8 62 99.0 Highly correlated
3 ZIM3 54 87.0 Moderately correlated
4 ZNF248 45 99.0 Highly correlated
5 ZNF382 34 99.0 Highly correlated
6 ZNF160 34 74.0 Weakly correlated
7 ZNF486 31 8.6 Weakly correlated
8 ZNF490 28 43.0 Weakly correlated
9 ZNF101 28 43.0 Weakly correlated
10 ZNF84 28 99.0 Highly correlated
11 ZNF136 24 74.0 Weakly correlated
12 ZNF81 20 99.0 Highly correlated
13 ZNF250 19 99.0 Highly correlated
14 ZNF92 19 28.9 Weakly correlated
15 ZNF723 19 15.2 Weakly correlated
16 ZNF263 18 180.0 Weakly correlated
17 ZNF558 15 99.0 Highly correlated
18 ZNF471 14 94.0 Moderately correlated
19 ZNF317 14 99.0 Highly correlated
20 ZNF324 11 99.0 Highly correlated
21 ZNF480 11 43.0 Weakly correlated
22 ZNF479 11 6.4 Weakly correlated
23 ZNF534 10 19.6 Weakly correlated
24 ZNF585A 10 99.0 Highly correlated
25 ZNF680 10 28.9 Weakly correlated
26 ZNF766 9 43.0 Weakly correlated
27 ZNF793 7 99.0 Highly correlated
28 ZNF597 7 94.0 Moderately correlated
29 ZNF140 7 99.0 Highly correlated
30 ZFP57 6 87.0 Moderately correlated
31 ZNF589 6 28.9 Weakly correlated
32 ZNF75D 6 94.0 Moderately correlated
33 ZNF429 6 28.9 Weakly correlated
34 ZNF18 6 160.0 Weakly correlated
35 ZNF320 5 28.9 Weakly correlated
36 ZNF175 5 94.0 Moderately correlated
37 ZNF337 5 43.0 Weakly correlated
38 ZNF707 4 74.0 Weakly correlated
39 ZNF133 4 99.0 Highly correlated
40 ZNF506 4 28.9 Weakly correlated
41 ZNF485 4 94.0 Moderately correlated
42 ZNF287 4 99.0 Highly correlated
43 ZNF705B 4 28.9 Weakly correlated
44 ZNF701 3 28.9 Weakly correlated
45 ZNF641 3 99.0 Highly correlated
46 ZNF26 3 99.0 Highly correlated
47 ZNF584 2 99.0 Highly correlated
48 ZFP37 2 99.0 Highly correlated
49 ZNF10 2 99.0 Highly correlated
50 ZFP28 2 99.0 Highly correlated
51 ZKSCAN5 2 160.0 Weakly correlated
52 ZNF468 2 28.9 Weakly correlated
53 ZNF792 2 94.0 Moderately correlated
54 ZKSCAN1 2 160.0 Weakly correlated
55 ZNF528 2 43.0 Weakly correlated
56 ZNF197 2 99.0 Highly correlated
57 ZNF735 2 28.9 Weakly correlated
58 ZNF347 2 43.0 Weakly correlated
59 ZNF879 2 99.0 Highly correlated
60 ZNF211 2 94.0 Moderately correlated
61 ZNF705D 2 28.9 Weakly correlated
62 ZNF677 2 99.0 Highly correlated
63 ZNF44 2 43.0 Weakly correlated
64 ZKSCAN8 2 160.0 Weakly correlated
65 ZFP14 1 99.0 Highly correlated
66 ZNF695 1 28.9 Weakly correlated
67 ZNF614 1 99.0 Highly correlated
68 ZIK1 1 87.0 Moderately correlated
69 ZNF274 1 99.0 Highly correlated
70 ZNF33A 1 99.0 Highly correlated
71 ZNF264 1 99.0 Highly correlated
72 ZNF585B 1 99.0 Highly correlated
73 ZNF7 1 99.0 Highly correlated
74 ZNF684 1 99.0 Highly correlated
75 ZNF549 1 87.0 Moderately correlated
76 ZNF605 1 99.0 Highly correlated
77 ZNF91 1 6.0 Weakly correlated
78 ZNF257 1 0.0 Weakly correlated
79 ZNF189 1 99.0 Highly correlated
80 ZNF679 1 28.9 Weakly correlated
81 ZNF610 1 28.9 Weakly correlated
82 ZNF354A 1 99.0 Highly correlated
83 ZNF334 1 99.0 Highly correlated
84 ZNF557 1 15.2 Weakly correlated
85 ZNF154 1 94.0 Moderately correlated
86 ZNF331 1 94.0 Moderately correlated
87 ZNF394 1 99.0 Highly correlated
88 ZNF41 1 99.0 Highly correlated
89 ZNF583 1 99.0 Highly correlated
90 ZNF141 1 43.0 Weakly correlated
91 ZNF282 1 319.0 Weakly correlated
92 ZNF2 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Moderately correlated
2 ZNF18 160.0 Weakly correlated
3 ZNF251 94.0 Moderately correlated
4 ZNF263 180.0 Weakly correlated
5 ZNF317 99.0 Highly correlated
6 ZNF486 8.6 Weakly correlated
7 ZNF558 99.0 Highly correlated
8 ZNF589 28.9 Weakly correlated
9 ZNF597 94.0 Moderately correlated
10 ZNF680 28.9 Weakly correlated
11 ZNF723 15.2 Weakly correlated
12 ZNF75D 94.0 Moderately correlated
13 ZNF793 99.0 Highly correlated
14 ZNF84 99.0 Highly correlated
15 ZNF92 28.9 Weakly correlated