ZRdb KZFP & Repeats
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LINE_L1MB1_3END

  • Name
    L1MB1_3END
  • Repbase
    L1MB1
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000267
Description :

ORF2 ends at bp ~675
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaatatccaaaatatataaggaactcctacaactcaatagcaaaaaaacaaataacccgattaaaaaatgggcaaaggacttgaatagacatttctccaaagaagacatacaaatggccaacaggtatatgaaaagatgctcaacatcactaatcatcagggaaatgcaaatcaaaaccacaatgagatatcacctcacacctgttaggatggctattatcaaaaaaacaaaaaataacaagtgttggcgaggatgtggagaaattggaacccttgtacactgttggtgggaatgtaaaatggtgcagccgctatggaaaacagtatggaggttcctcaaaaaattaaaaatagaactaccatatgatccagcaatcccacttctgggtatttatccaaaagaattgaaatcaggatctcgaagagatatttgcactcccatgttcattgcagcattattcacaatagccaagatgtggaaacaacctaaatgtccatcgacggatgaatggataaagaaaatgtggtatatacatacaatggaatattattcagccttaaaaaagaaggaaatcctgccatatgcgacaacatggatgaaccttgaggacattatgctaagtgaaataagccagtcacagaaggacaaatactgcatgattccacttatatgaggtatctaaaatagtcaaactcatagaagcagagagtagaatggtggttgccaggggctggggggagggggaaatggggagttgctattcaacgggtataaagtttcagttatgcaagatgaataagttctagagatctgctgtacaacattgtgcctatagttaacaatactgtattgtacacttaaaaatttgttaagagggtagatctcatgttaagtgttcttaccacaataaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 230 94.0 Moderately correlated
2 ZNF382 230 99.0 Highly correlated
3 ZIM3 63 87.0 Moderately correlated
4 ZNF136 49 74.0 Weakly correlated
5 ZNF160 49 74.0 Weakly correlated
6 ZNF766 48 43.0 Weakly correlated
7 ZNF679 47 28.9 Weakly correlated
8 ZNF680 39 28.9 Weakly correlated
9 ZNF723 39 15.2 Weakly correlated
10 ZNF248 36 99.0 Highly correlated
11 ZNF793 36 99.0 Highly correlated
12 ZNF317 35 99.0 Highly correlated
13 ZNF471 33 94.0 Moderately correlated
14 ZNF92 32 28.9 Weakly correlated
15 ZNF394 31 99.0 Highly correlated
16 ZNF490 26 43.0 Weakly correlated
17 ZNF486 24 8.6 Weakly correlated
18 ZNF705B 20 28.9 Weakly correlated
19 ZNF250 17 99.0 Highly correlated
20 ZNF263 17 180.0 Weakly correlated
21 ZFP37 16 99.0 Highly correlated
22 ZNF705D 16 28.9 Weakly correlated
23 ZNF8 16 99.0 Highly correlated
24 ZNF707 15 74.0 Weakly correlated
25 ZFP57 14 87.0 Moderately correlated
26 ZNF101 14 43.0 Weakly correlated
27 ZNF175 14 94.0 Moderately correlated
28 ZNF585A 13 99.0 Highly correlated
29 ZNF182 12 99.0 Highly correlated
30 ZNF558 12 99.0 Highly correlated
31 ZNF589 12 28.9 Weakly correlated
32 ZNF84 12 99.0 Highly correlated
33 ZKSCAN1 11 160.0 Weakly correlated
34 ZNF274 11 99.0 Highly correlated
35 ZNF479 11 6.4 Weakly correlated
36 ZNF320 10 28.9 Weakly correlated
37 ZNF140 9 99.0 Highly correlated
38 ZNF324 9 99.0 Highly correlated
39 ZKSCAN8 8 160.0 Weakly correlated
40 ZNF133 8 99.0 Highly correlated
41 ZNF18 8 160.0 Weakly correlated
42 ZNF2 8 99.0 Highly correlated
43 ZNF429 8 28.9 Weakly correlated
44 ZNF534 8 19.6 Weakly correlated
45 ZFP28 7 99.0 Highly correlated
46 ZNF197 7 99.0 Highly correlated
47 ZNF354A 7 99.0 Highly correlated
48 ZNF485 7 94.0 Moderately correlated
49 ZNF597 7 94.0 Moderately correlated
50 ZNF257 6 0.0 Weakly correlated
51 ZNF41 6 99.0 Highly correlated
52 ZNF506 6 28.9 Weakly correlated
53 ZNF554 6 99.0 Highly correlated
54 ZNF584 6 99.0 Highly correlated
55 ZFP69B 5 99.0 Highly correlated
56 ZNF28 5 28.9 Weakly correlated
57 ZNF441 5 43.0 Weakly correlated
58 ZNF682 5 28.9 Weakly correlated
59 ZNF701 5 28.9 Weakly correlated
60 ZNF81 5 99.0 Highly correlated
61 ZNF211 4 94.0 Moderately correlated
62 ZNF337 4 43.0 Weakly correlated
63 ZNF425 4 94.0 Moderately correlated
64 ZNF468 4 28.9 Weakly correlated
65 ZNF792 4 94.0 Moderately correlated
66 ZNF879 4 99.0 Highly correlated
67 ZFP90 3 99.0 Highly correlated
68 ZKSCAN5 3 160.0 Weakly correlated
69 ZNF528 3 43.0 Weakly correlated
70 ZNF549 3 87.0 Moderately correlated
71 ZNF641 3 99.0 Highly correlated
72 ZNF735 3 28.9 Weakly correlated
73 ZFP30 2 99.0 Highly correlated
74 ZFP69 2 99.0 Highly correlated
75 ZNF169 2 94.0 Moderately correlated
76 ZNF26 2 99.0 Highly correlated
77 ZNF287 2 99.0 Highly correlated
78 ZNF354C 2 99.0 Highly correlated
79 ZNF440 2 28.9 Weakly correlated
80 ZNF483 2 99.0 Highly correlated
81 ZNF567 2 99.0 Highly correlated
82 ZNF583 2 99.0 Highly correlated
83 ZNF677 2 99.0 Highly correlated
84 ZNF823 2 43.0 Weakly correlated
85 ZNF845 2 28.9 Weakly correlated
86 ZNF91 2 6.0 Weakly correlated
87 ZNF141 1 43.0 Weakly correlated
88 ZNF17 1 69.0 Weakly correlated
89 ZNF189 1 99.0 Highly correlated
90 ZNF214 1 99.0 Highly correlated
91 ZNF222 1 43.0 Weakly correlated
92 ZNF224 1 69.0 Weakly correlated
93 ZNF230 1 28.9 Weakly correlated
94 ZNF264 1 99.0 Highly correlated
95 ZNF334 1 99.0 Highly correlated
96 ZNF33A 1 99.0 Highly correlated
97 ZNF417 1 28.9 Weakly correlated
98 ZNF433 1 43.0 Weakly correlated
99 ZNF44 1 43.0 Weakly correlated
100 ZNF454 1 99.0 Highly correlated
101 ZNF460 1 74.0 Weakly correlated
102 ZNF480 1 43.0 Weakly correlated
103 ZNF510 1 99.0 Highly correlated
104 ZNF519 1 19.6 Weakly correlated
105 ZNF547 1 74.0 Weakly correlated
106 ZNF559 1 74.0 Weakly correlated
107 ZNF585B 1 99.0 Highly correlated
108 ZNF605 1 99.0 Highly correlated
109 ZNF610 1 28.9 Weakly correlated
110 ZNF611 1 19.6 Weakly correlated
111 ZNF671 1 94.0 Moderately correlated
112 ZNF716 1 19.6 Weakly correlated
113 ZNF730 1 19.6 Weakly correlated
114 ZNF75D 1 94.0 Moderately correlated
115 ZNF761 1 19.6 Weakly correlated
116 ZNF778 1 74.0 Weakly correlated
117 ZNF791 1 87.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 199 94.0 Moderately correlated
2 ZNF160 47 74.0 Weakly correlated
3 ZNF382 42 99.0 Highly correlated
4 ZNF136 42 74.0 Weakly correlated
5 ZIM3 41 87.0 Moderately correlated
6 ZNF248 29 99.0 Highly correlated
7 ZNF471 25 94.0 Moderately correlated
8 ZNF723 19 15.2 Weakly correlated
9 ZNF490 17 43.0 Weakly correlated
10 ZNF250 16 99.0 Highly correlated
11 ZNF8 13 99.0 Highly correlated
12 ZNF680 13 28.9 Weakly correlated
13 ZNF793 12 99.0 Highly correlated
14 ZNF84 11 99.0 Highly correlated
15 ZNF92 10 28.9 Weakly correlated
16 ZNF317 10 99.0 Highly correlated
17 ZNF585A 10 99.0 Highly correlated
18 ZNF486 9 8.6 Weakly correlated
19 ZNF101 8 43.0 Weakly correlated
20 ZNF766 7 43.0 Weakly correlated
21 ZNF707 6 74.0 Weakly correlated
22 ZNF354A 5 99.0 Highly correlated
23 ZNF324 5 99.0 Highly correlated
24 ZFP57 5 87.0 Moderately correlated
25 ZNF479 5 6.4 Weakly correlated
26 ZNF133 5 99.0 Highly correlated
27 ZNF263 4 180.0 Weakly correlated
28 ZFP90 4 99.0 Highly correlated
29 ZNF879 4 99.0 Highly correlated
30 ZNF81 4 99.0 Highly correlated
31 ZNF140 4 99.0 Highly correlated
32 ZNF429 4 28.9 Weakly correlated
33 ZNF705B 3 28.9 Weakly correlated
34 ZNF558 3 99.0 Highly correlated
35 ZNF211 3 94.0 Moderately correlated
36 ZNF705D 3 28.9 Weakly correlated
37 ZNF468 3 28.9 Weakly correlated
38 ZNF337 3 43.0 Weakly correlated
39 ZNF534 3 19.6 Weakly correlated
40 ZNF320 3 28.9 Weakly correlated
41 ZNF735 3 28.9 Weakly correlated
42 ZNF394 2 99.0 Highly correlated
43 ZFP28 2 99.0 Highly correlated
44 ZNF597 2 94.0 Moderately correlated
45 ZNF506 2 28.9 Weakly correlated
46 ZNF485 2 94.0 Moderately correlated
47 ZNF287 2 99.0 Highly correlated
48 ZNF677 2 99.0 Highly correlated
49 ZNF528 1 43.0 Weakly correlated
50 ZFP69 1 99.0 Highly correlated
51 ZKSCAN1 1 160.0 Weakly correlated
52 ZKSCAN5 1 160.0 Weakly correlated
53 ZNF433 1 43.0 Weakly correlated
54 ZNF264 1 99.0 Highly correlated
55 ZNF417 1 28.9 Weakly correlated
56 ZNF589 1 28.9 Weakly correlated
57 ZNF671 1 94.0 Moderately correlated
58 ZNF701 1 28.9 Weakly correlated
59 ZNF257 1 0.0 Weakly correlated
60 ZNF554 1 99.0 Highly correlated
61 ZNF679 1 28.9 Weakly correlated
62 ZNF33A 1 99.0 Highly correlated
63 ZNF41 1 99.0 Highly correlated
64 ZNF197 1 99.0 Highly correlated
65 ZNF425 1 94.0 Moderately correlated
66 ZNF567 1 99.0 Highly correlated
67 ZNF44 1 43.0 Weakly correlated
68 ZNF75D 1 94.0 Moderately correlated
69 ZNF792 1 94.0 Moderately correlated
70 ZNF559 1 74.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF251 94.0 Moderately correlated
2 ZNF486 8.6 Weakly correlated
3 ZNF680 28.9 Weakly correlated
4 ZNF707 74.0 Weakly correlated
5 ZNF84 99.0 Highly correlated
6 ZNF92 28.9 Weakly correlated