ZRdb KZFP & Repeats
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LINE_L1MA9_3END

  • Name
    L1MA9_3END
  • Repbase
    L1MA9
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000266
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaatatccaaaatatataaggaactcanacaactcaatagcaaaaaaacaaataacccgattnaaaaatgggcaaaggacctgaatagacatttctccaaagaagacatacaaatggccaacaggtatatgaaaaggtgctcaacatcactaatcatcagggaaatgcaaatcaaaaccacaatgagatatcacctcacacctgttaggatggctattatcaaaaagacaaaagataacaagtgttggcgaggatgtggagaaaagggaacccttgtacactgttggtgggaatgtaaattggtacagccattatggaaaacagtatggaggttcctcaaaaaattaaaaatagaactaccatatgatccagcaatcccacttctgggtatatatccaaaggaaatgaaatcagtatctcgaagagatatctgcactcccatgttcattgcagcattattcacaatagccaagatatggaaacaacctaagtgtccatcgacggatgaatggataaagaaaatgtggtatatatacacaatggaatattattcagccttaaaaaagaaggaaatcctgccatttgcgacaacatggatgaacctggaggacattatgctaagtgaaataagccagacacagaaagacaaatactgcatgatctcacttatatgtggaatctaaaaaagtcgaactcatagaagcagagagtagaatggtggttgccaggggctggggggtgggggaaatggggagatgttggtcaaagggtacaaagtttcagttatgcaggatgaataagttctggagatctaatgtacagcatggtgactatagttaataatactgtattgtatacttgaaatttgctaagagagtagatcttaagtgttctcaccacacacaaaaaaatggtaactatgtgaggtgatggatatgttaattagcttgattgtggtaatcatttcacaatgtatacgtatatcaaaacatcacgttgtacaccttaaatatatacaatttttatttgtcaattatacctcaataaagctggaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 581 94.0 Moderately correlated
2 ZNF382 552 99.0 Highly correlated
3 ZIM3 156 87.0 Moderately correlated
4 ZNF160 154 74.0 Weakly correlated
5 ZNF394 134 99.0 Highly correlated
6 ZNF723 134 15.2 Weakly correlated
7 ZNF471 119 94.0 Moderately correlated
8 ZNF317 115 99.0 Highly correlated
9 ZNF136 108 74.0 Weakly correlated
10 ZNF490 106 43.0 Weakly correlated
11 ZNF92 104 28.9 Weakly correlated
12 ZNF680 99 28.9 Weakly correlated
13 ZNF766 99 43.0 Weakly correlated
14 ZNF679 92 28.9 Weakly correlated
15 ZNF248 66 99.0 Highly correlated
16 ZNF705B 64 28.9 Weakly correlated
17 ZNF793 60 99.0 Highly correlated
18 ZFP37 56 99.0 Highly correlated
19 ZNF101 56 43.0 Weakly correlated
20 ZNF2 56 99.0 Highly correlated
21 ZNF705D 49 28.9 Weakly correlated
22 ZNF558 48 99.0 Highly correlated
23 ZNF18 47 160.0 Weakly correlated
24 ZNF263 47 180.0 Weakly correlated
25 ZNF324 46 99.0 Highly correlated
26 ZNF84 46 99.0 Highly correlated
27 ZNF250 36 99.0 Highly correlated
28 ZNF175 35 94.0 Moderately correlated
29 ZNF486 35 8.6 Weakly correlated
30 ZNF8 30 99.0 Highly correlated
31 ZNF554 28 99.0 Highly correlated
32 ZNF589 27 28.9 Weakly correlated
33 ZFP69B 26 99.0 Highly correlated
34 ZNF320 26 28.9 Weakly correlated
35 ZNF585A 26 99.0 Highly correlated
36 ZNF597 26 94.0 Moderately correlated
37 ZKSCAN1 25 160.0 Weakly correlated
38 ZNF528 23 43.0 Weakly correlated
39 ZNF133 22 99.0 Highly correlated
40 ZNF534 22 19.6 Weakly correlated
41 ZNF707 22 74.0 Weakly correlated
42 ZNF75D 22 94.0 Moderately correlated
43 ZFP57 21 87.0 Moderately correlated
44 ZNF182 21 99.0 Highly correlated
45 ZNF583 21 99.0 Highly correlated
46 ZNF140 20 99.0 Highly correlated
47 ZNF197 20 99.0 Highly correlated
48 ZNF479 20 6.4 Weakly correlated
49 ZNF506 20 28.9 Weakly correlated
50 ZNF81 20 99.0 Highly correlated
51 ZFP28 19 99.0 Highly correlated
52 ZKSCAN8 19 160.0 Weakly correlated
53 ZNF257 17 0.0 Weakly correlated
54 ZNF485 17 94.0 Moderately correlated
55 ZNF584 17 99.0 Highly correlated
56 ZNF585B 15 99.0 Highly correlated
57 ZNF202 14 160.0 Weakly correlated
58 ZNF287 13 99.0 Highly correlated
59 ZNF28 13 28.9 Weakly correlated
60 ZNF610 13 28.9 Weakly correlated
61 ZNF264 12 99.0 Highly correlated
62 ZNF641 12 99.0 Highly correlated
63 ZNF701 12 28.9 Weakly correlated
64 ZNF879 12 99.0 Highly correlated
65 ZNF169 10 94.0 Moderately correlated
66 ZNF274 10 99.0 Highly correlated
67 ZNF337 10 43.0 Weakly correlated
68 ZNF786 10 99.0 Highly correlated
69 ZNF354A 9 99.0 Highly correlated
70 ZNF441 9 43.0 Weakly correlated
71 ZNF483 9 99.0 Highly correlated
72 ZNF468 8 28.9 Weakly correlated
73 ZNF792 8 94.0 Moderately correlated
74 ZNF816 8 28.9 Weakly correlated
75 ZNF347 7 43.0 Weakly correlated
76 ZNF735 7 28.9 Weakly correlated
77 ZNF33A 6 99.0 Highly correlated
78 ZNF41 6 99.0 Highly correlated
79 ZNF677 6 99.0 Highly correlated
80 ZNF778 6 74.0 Weakly correlated
81 ZNF141 5 43.0 Weakly correlated
82 ZNF26 5 99.0 Highly correlated
83 ZNF334 5 99.0 Highly correlated
84 ZNF425 5 94.0 Moderately correlated
85 ZNF454 5 99.0 Highly correlated
86 ZNF519 5 19.6 Weakly correlated
87 ZNF563 5 28.9 Weakly correlated
88 ZNF674 5 99.0 Highly correlated
89 ZNF682 5 28.9 Weakly correlated
90 ZNF808 5 19.6 Weakly correlated
91 ZFP69 4 99.0 Highly correlated
92 ZNF17 4 69.0 Weakly correlated
93 ZNF284 4 43.0 Weakly correlated
94 ZNF429 4 28.9 Weakly correlated
95 ZNF433 4 43.0 Weakly correlated
96 ZNF547 4 74.0 Weakly correlated
97 ZNF605 4 99.0 Highly correlated
98 ZNF10 3 99.0 Highly correlated
99 ZNF135 3 94.0 Moderately correlated
100 ZNF234 3 99.0 Highly correlated
101 ZNF302 3 43.0 Weakly correlated
102 ZNF440 3 28.9 Weakly correlated
103 ZNF510 3 99.0 Highly correlated
104 ZNF549 3 87.0 Moderately correlated
105 ZNF616 3 43.0 Weakly correlated
106 ZNF700 3 28.9 Weakly correlated
107 ZNF716 3 19.6 Weakly correlated
108 ZNF730 3 19.6 Weakly correlated
109 ZNF765 3 8.6 Weakly correlated
110 ZNF799 3 43.0 Weakly correlated
111 ZNF823 3 43.0 Weakly correlated
112 ZNF85 3 28.9 Weakly correlated
113 ZFP30 2 99.0 Highly correlated
114 ZKSCAN5 2 160.0 Weakly correlated
115 ZNF114 2 28.9 Weakly correlated
116 ZNF157 2 99.0 Highly correlated
117 ZNF211 2 94.0 Moderately correlated
118 ZNF230 2 28.9 Weakly correlated
119 ZNF253 2 19.6 Weakly correlated
120 ZNF282 2 319.0 Weakly correlated
121 ZNF331 2 94.0 Moderately correlated
122 ZNF343 2 74.0 Weakly correlated
123 ZNF354C 2 99.0 Highly correlated
124 ZNF418 2 43.0 Weakly correlated
125 ZNF432 2 99.0 Highly correlated
126 ZNF500 2 160.0 Weakly correlated
127 ZNF525 2 19.6 Weakly correlated
128 ZNF544 2 0.0 Weakly correlated
129 ZNF557 2 15.2 Weakly correlated
130 ZNF559 2 74.0 Weakly correlated
131 ZNF568 2 99.0 Highly correlated
132 ZNF570 2 99.0 Highly correlated
133 ZNF573 2 94.0 Moderately correlated
134 ZNF586 2 43.0 Weakly correlated
135 ZNF611 2 19.6 Weakly correlated
136 ZNF627 2 74.0 Weakly correlated
137 ZNF649 2 28.9 Weakly correlated
138 ZNF736 2 43.0 Weakly correlated
139 ZNF777 2 319.0 Weakly correlated
140 ZNF878 2 43.0 Weakly correlated
141 ZNF93 2 8.6 Weakly correlated
142 RBAK 1 99.0 Highly correlated
143 ZFP90 1 99.0 Highly correlated
144 ZIK1 1 87.0 Moderately correlated
145 ZKSCAN4 1 99.0 Highly correlated
146 ZNF100 1 28.9 Weakly correlated
147 ZNF124 1 43.0 Weakly correlated
148 ZNF177 1 94.0 Moderately correlated
149 ZNF180 1 99.0 Highly correlated
150 ZNF189 1 99.0 Highly correlated
151 ZNF205 1 180.0 Weakly correlated
152 ZNF214 1 99.0 Highly correlated
153 ZNF223 1 43.0 Weakly correlated
154 ZNF227 1 99.0 Highly correlated
155 ZNF233 1 99.0 Highly correlated
156 ZNF254 1 43.0 Weakly correlated
157 ZNF267 1 43.0 Weakly correlated
158 ZNF286A 1 160.0 Weakly correlated
159 ZNF304 1 99.0 Highly correlated
160 ZNF30 1 94.0 Moderately correlated
161 ZNF333 1 99.0 Highly correlated
162 ZNF354B 1 99.0 Highly correlated
163 ZNF398 1 99.0 Highly correlated
164 ZNF419 1 28.9 Weakly correlated
165 ZNF439 1 8.6 Weakly correlated
166 ZNF43 1 43.0 Weakly correlated
167 ZNF442 1 43.0 Weakly correlated
168 ZNF445 1 99.0 Highly correlated
169 ZNF44 1 43.0 Weakly correlated
170 ZNF460 1 74.0 Weakly correlated
171 ZNF461 1 99.0 Highly correlated
172 ZNF480 1 43.0 Weakly correlated
173 ZNF484 1 99.0 Highly correlated
174 ZNF496 1 99.0 Highly correlated
175 ZNF514 1 94.0 Moderately correlated
176 ZNF530 1 28.9 Weakly correlated
177 ZNF543 1 99.0 Highly correlated
178 ZNF548 1 94.0 Moderately correlated
179 ZNF550 1 94.0 Moderately correlated
180 ZNF551 1 94.0 Moderately correlated
181 ZNF560 1 43.0 Weakly correlated
182 ZNF571 1 99.0 Highly correlated
183 ZNF587 1 28.9 Weakly correlated
184 ZNF607 1 43.0 Weakly correlated
185 ZNF658 1 99.0 Highly correlated
186 ZNF66 1 0.0 Weakly correlated
187 ZNF675 1 8.6 Weakly correlated
188 ZNF695 1 28.9 Weakly correlated
189 ZNF726 1 28.9 Weakly correlated
190 ZNF747 1 43.0 Weakly correlated
191 ZNF780A 1 43.0 Weakly correlated
192 ZNF782 1 99.0 Highly correlated
193 ZNF785 1 94.0 Moderately correlated
194 ZNF791 1 87.0 Moderately correlated
195 ZNF7 1 99.0 Highly correlated
196 ZNF805 1 99.0 Highly correlated
197 ZNF813 1 28.9 Weakly correlated
198 ZNF845 1 28.9 Weakly correlated
199 ZNF846 1 74.0 Weakly correlated
200 ZNF850 1 28.9 Weakly correlated
201 ZNF860 1 0.0 Weakly correlated
202 ZNF880 1 28.9 Weakly correlated
203 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 479 94.0 Moderately correlated
2 ZNF160 143 74.0 Weakly correlated
3 ZNF723 104 15.2 Weakly correlated
4 ZNF490 100 43.0 Weakly correlated
5 ZNF471 92 94.0 Moderately correlated
6 ZNF136 88 74.0 Weakly correlated
7 ZIM3 87 87.0 Moderately correlated
8 ZNF382 85 99.0 Highly correlated
9 ZNF248 60 99.0 Highly correlated
10 ZNF84 43 99.0 Highly correlated
11 ZNF250 33 99.0 Highly correlated
12 ZNF101 32 43.0 Weakly correlated
13 ZNF680 29 28.9 Weakly correlated
14 ZNF92 28 28.9 Weakly correlated
15 ZNF317 22 99.0 Highly correlated
16 ZNF793 22 99.0 Highly correlated
17 ZNF81 19 99.0 Highly correlated
18 ZNF8 19 99.0 Highly correlated
19 ZNF585A 14 99.0 Highly correlated
20 ZNF140 13 99.0 Highly correlated
21 ZNF486 13 8.6 Weakly correlated
22 ZNF705D 12 28.9 Weakly correlated
23 ZNF766 12 43.0 Weakly correlated
24 ZNF707 11 74.0 Weakly correlated
25 ZNF485 11 94.0 Moderately correlated
26 ZFP28 10 99.0 Highly correlated
27 ZNF320 10 28.9 Weakly correlated
28 ZNF324 10 99.0 Highly correlated
29 ZNF705B 10 28.9 Weakly correlated
30 ZNF257 9 0.0 Weakly correlated
31 ZNF133 8 99.0 Highly correlated
32 ZNF506 8 28.9 Weakly correlated
33 ZNF75D 8 94.0 Moderately correlated
34 ZNF18 8 160.0 Weakly correlated
35 ZNF264 8 99.0 Highly correlated
36 ZNF479 8 6.4 Weakly correlated
37 ZNF534 7 19.6 Weakly correlated
38 ZNF597 7 94.0 Moderately correlated
39 ZNF483 6 99.0 Highly correlated
40 ZNF202 6 160.0 Weakly correlated
41 ZNF337 6 43.0 Weakly correlated
42 ZNF679 6 28.9 Weakly correlated
43 ZNF879 6 99.0 Highly correlated
44 ZFP57 5 87.0 Moderately correlated
45 ZNF263 5 180.0 Weakly correlated
46 ZNF641 5 99.0 Highly correlated
47 ZNF558 5 99.0 Highly correlated
48 ZNF677 5 99.0 Highly correlated
49 ZNF468 5 28.9 Weakly correlated
50 ZNF816 5 28.9 Weakly correlated
51 ZNF585B 4 99.0 Highly correlated
52 ZNF786 4 99.0 Highly correlated
53 ZNF354A 4 99.0 Highly correlated
54 ZFP37 3 99.0 Highly correlated
55 ZNF10 3 99.0 Highly correlated
56 ZNF735 3 28.9 Weakly correlated
57 ZNF287 3 99.0 Highly correlated
58 ZNF175 3 94.0 Moderately correlated
59 ZNF33A 3 99.0 Highly correlated
60 ZNF528 3 43.0 Weakly correlated
61 ZNF589 3 28.9 Weakly correlated
62 ZFP69 2 99.0 Highly correlated
63 ZNF114 2 28.9 Weakly correlated
64 ZNF141 2 43.0 Weakly correlated
65 ZNF584 2 99.0 Highly correlated
66 ZNF28 2 28.9 Weakly correlated
67 ZNF197 2 99.0 Highly correlated
68 ZNF547 2 74.0 Weakly correlated
69 ZNF433 2 43.0 Weakly correlated
70 ZNF347 2 43.0 Weakly correlated
71 ZNF583 2 99.0 Highly correlated
72 ZNF701 2 28.9 Weakly correlated
73 ZFP90 1 99.0 Highly correlated
74 ZIK1 1 87.0 Moderately correlated
75 ZNF274 1 99.0 Highly correlated
76 ZNF2 1 99.0 Highly correlated
77 ZNF398 1 99.0 Highly correlated
78 ZNF429 1 28.9 Weakly correlated
79 ZNF823 1 43.0 Weakly correlated
80 ZNF26 1 99.0 Highly correlated
81 ZNF496 1 99.0 Highly correlated
82 ZNF649 1 28.9 Weakly correlated
83 ZNF765 1 8.6 Weakly correlated
84 ZNF785 1 94.0 Moderately correlated
85 ZNF182 1 99.0 Highly correlated
86 ZNF454 1 99.0 Highly correlated
87 ZNF610 1 28.9 Weakly correlated
88 ZNF792 1 94.0 Moderately correlated
89 ZNF799 1 43.0 Weakly correlated
90 ZNF211 1 94.0 Moderately correlated
91 ZNF439 1 8.6 Weakly correlated
92 ZNF716 1 19.6 Weakly correlated
93 ZNF394 1 99.0 Highly correlated
94 ZNF44 1 43.0 Weakly correlated
95 ZNF530 1 28.9 Weakly correlated
96 ZNF791 1 87.0 Moderately correlated
97 ZNF41 1 99.0 Highly correlated
98 ZNF554 1 99.0 Highly correlated
99 ZNF560 1 43.0 Weakly correlated
100 ZNF570 1 99.0 Highly correlated
101 ZNF674 1 99.0 Highly correlated
102 ZNF782 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF251 94.0 Moderately correlated
2 ZNF486 8.6 Weakly correlated
3 ZNF597 94.0 Moderately correlated
4 ZNF680 28.9 Weakly correlated
5 ZNF707 74.0 Weakly correlated
6 ZNF723 15.2 Weakly correlated
7 ZNF75D 94.0 Moderately correlated
8 ZNF84 99.0 Highly correlated
9 ZNF92 28.9 Weakly correlated