ZRdb KZFP & Repeats
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LINE_L1MA8_3END

  • Name
    L1MA8_3END
  • Repbase
    L1MA8
  • Type
    LINE
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000265
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaatatccaaaatatataaggaactcaaacaactcaatagcaagaaaacaaataacccgattnaaaaatgggcaaaggacctgaatagacatttctcaaaagaagacatacaaatggccaacaggtatatgaaaaaatgctcaacatcactaatcatcagggaaatgcaaattaaaaccacaatgagatatcacctcacacctgttagaatggctattatcaaaaagacgaaagataacaagtgttggcgaggatgtggagaaaagggaacccttgcacactgttggtgggaatgtaaattagtacagccattatggaaaacagtatggaggttcctcaaaaaattaaaaatagaactaccatatgatccagcaatcccactactgggtatatatccaaaggaaatgaaatcagtatgtcgaagagatatctgcactcccatgttcattgcagcattattcacaatagccaagatatggaatcaacctaagtgtccatcaacggatgaatggataaagaaaatgtggtatatatacacaatggaatactattcagccttaaaaaagaaggaaatcctgtcatttgcgacaacatggatgaacctggaggacattatgttaagtgaaataagccaggcacagaaagacaaataccgcatgatctcacttatatgtggaatctaaaaaagtcgaactcatagaagcagagagtagaatggtggttaccaggggctggggagtgggaggattggggagatgttggtcaaaggatacaaaatttcagttagacaggaggaataagttcaagagatctattgtacaacatggtgactatagttaataacaatgtattgtatncttgaaaattgctaagagagtagattttaagtgttctcaccacaaaaaaatgataagtatgtgaggtaatgcatatgttaattagctcgatttagccattccacaatgtatacatatttcaaaacatcatgttgtacacnataaatatatacaatttttatttgtcaattaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 563 94.0 Weakly correlated
2 ZNF382 527 99.0 Weakly correlated
3 ZNF723 264 15.2 Weakly correlated
4 ZNF680 85 28.9 Weakly correlated
5 ZNF136 79 74.0 Moderately correlated
6 ZNF160 77 74.0 Moderately correlated
7 ZIM3 74 87.0 Highly correlated
8 ZNF317 73 99.0 Weakly correlated
9 ZNF394 72 99.0 Weakly correlated
10 ZNF471 72 94.0 Weakly correlated
11 ZNF766 72 43.0 Weakly correlated
12 ZNF679 63 28.9 Weakly correlated
13 ZNF490 58 43.0 Weakly correlated
14 ZNF92 58 28.9 Weakly correlated
15 ZNF248 57 99.0 Weakly correlated
16 ZNF486 48 8.6 Weakly correlated
17 ZNF263 46 180.0 Weakly correlated
18 ZFP37 40 99.0 Weakly correlated
19 ZNF705B 35 28.9 Weakly correlated
20 ZNF101 32 43.0 Weakly correlated
21 ZNF8 32 99.0 Weakly correlated
22 ZNF2 31 99.0 Weakly correlated
23 ZNF324 27 99.0 Weakly correlated
24 ZNF585A 26 99.0 Weakly correlated
25 ZNF793 24 99.0 Weakly correlated
26 ZNF84 24 99.0 Weakly correlated
27 ZNF250 23 99.0 Weakly correlated
28 ZNF175 21 94.0 Weakly correlated
29 ZNF705D 19 28.9 Weakly correlated
30 ZNF479 18 6.4 Weakly correlated
31 ZNF558 18 99.0 Weakly correlated
32 ZNF589 18 28.9 Weakly correlated
33 ZNF18 17 160.0 Weakly correlated
34 ZNF583 17 99.0 Weakly correlated
35 ZKSCAN1 15 160.0 Weakly correlated
36 ZNF534 15 19.6 Weakly correlated
37 ZFP28 14 99.0 Weakly correlated
38 ZNF140 14 99.0 Weakly correlated
39 ZNF182 14 99.0 Weakly correlated
40 ZNF584 14 99.0 Weakly correlated
41 ZNF610 14 28.9 Weakly correlated
42 ZFP69B 13 99.0 Weakly correlated
43 ZNF320 12 28.9 Weakly correlated
44 ZFP57 11 87.0 Highly correlated
45 ZKSCAN8 11 160.0 Weakly correlated
46 ZNF506 11 28.9 Weakly correlated
47 ZNF547 11 74.0 Moderately correlated
48 ZNF197 10 99.0 Weakly correlated
49 ZNF528 10 43.0 Weakly correlated
50 ZNF707 10 74.0 Moderately correlated
51 ZNF133 9 99.0 Weakly correlated
52 ZNF202 9 160.0 Weakly correlated
53 ZNF274 9 99.0 Weakly correlated
54 ZNF441 9 43.0 Weakly correlated
55 ZNF519 9 19.6 Weakly correlated
56 ZNF75D 9 94.0 Weakly correlated
57 ZNF10 7 99.0 Weakly correlated
58 ZNF114 7 28.9 Weakly correlated
59 ZNF257 7 0.0 Weakly correlated
60 ZNF264 7 99.0 Weakly correlated
61 ZNF287 7 99.0 Weakly correlated
62 ZNF429 7 28.9 Weakly correlated
63 ZNF485 7 94.0 Weakly correlated
64 ZNF560 7 43.0 Weakly correlated
65 ZNF26 6 99.0 Weakly correlated
66 ZNF483 6 99.0 Weakly correlated
67 ZNF597 6 94.0 Weakly correlated
68 ZNF701 6 28.9 Weakly correlated
69 ZNF786 6 99.0 Weakly correlated
70 ZNF224 5 69.0 Weakly correlated
71 ZNF425 5 94.0 Weakly correlated
72 ZNF879 5 99.0 Weakly correlated
73 ZNF169 4 94.0 Weakly correlated
74 ZNF284 4 43.0 Weakly correlated
75 ZNF28 4 28.9 Weakly correlated
76 ZNF354C 4 99.0 Weakly correlated
77 ZNF440 4 28.9 Weakly correlated
78 ZNF549 4 87.0 Highly correlated
79 ZNF554 4 99.0 Weakly correlated
80 ZNF641 4 99.0 Weakly correlated
81 ZNF682 4 28.9 Weakly correlated
82 ZNF778 4 74.0 Moderately correlated
83 ZNF81 4 99.0 Weakly correlated
84 ZFP90 3 99.0 Weakly correlated
85 ZNF141 3 43.0 Weakly correlated
86 ZNF211 3 94.0 Weakly correlated
87 ZNF282 3 319.0 Weakly correlated
88 ZNF337 3 43.0 Weakly correlated
89 ZNF354A 3 99.0 Weakly correlated
90 ZNF454 3 99.0 Weakly correlated
91 ZNF510 3 99.0 Weakly correlated
92 ZNF585B 3 99.0 Weakly correlated
93 ZNF671 3 94.0 Weakly correlated
94 ZNF677 3 99.0 Weakly correlated
95 ZNF735 3 28.9 Weakly correlated
96 ZNF765 3 8.6 Weakly correlated
97 ZKSCAN5 2 160.0 Weakly correlated
98 ZNF17 2 69.0 Weakly correlated
99 ZNF184 2 99.0 Weakly correlated
100 ZNF286A 2 160.0 Weakly correlated
101 ZNF41 2 99.0 Weakly correlated
102 ZNF44 2 43.0 Weakly correlated
103 ZNF468 2 28.9 Weakly correlated
104 ZNF544 2 0.0 Weakly correlated
105 ZNF559 2 74.0 Moderately correlated
106 ZNF564 2 74.0 Moderately correlated
107 ZNF567 2 99.0 Weakly correlated
108 ZNF582 2 99.0 Weakly correlated
109 ZNF607 2 43.0 Weakly correlated
110 ZNF624 2 99.0 Weakly correlated
111 ZNF66 2 0.0 Weakly correlated
112 ZNF75A 2 94.0 Weakly correlated
113 ZNF777 2 319.0 Weakly correlated
114 ZNF792 2 94.0 Weakly correlated
115 ZNF823 2 43.0 Weakly correlated
116 ZNF852 2 94.0 Weakly correlated
117 ZFP30 1 99.0 Weakly correlated
118 ZFP69 1 99.0 Weakly correlated
119 ZFP92 1 99.0 Weakly correlated
120 ZKSCAN2 1 180.0 Weakly correlated
121 ZNF100 1 28.9 Weakly correlated
122 ZNF124 1 43.0 Weakly correlated
123 ZNF135 1 94.0 Weakly correlated
124 ZNF154 1 94.0 Weakly correlated
125 ZNF180 1 99.0 Weakly correlated
126 ZNF189 1 99.0 Weakly correlated
127 ZNF19 1 99.0 Weakly correlated
128 ZNF205 1 180.0 Weakly correlated
129 ZNF20 1 43.0 Weakly correlated
130 ZNF212 1 160.0 Weakly correlated
131 ZNF222 1 43.0 Weakly correlated
132 ZNF223 1 43.0 Weakly correlated
133 ZNF225 1 74.0 Moderately correlated
134 ZNF230 1 28.9 Weakly correlated
135 ZNF253 1 19.6 Weakly correlated
136 ZNF273 1 28.9 Weakly correlated
137 ZNF283 1 99.0 Weakly correlated
138 ZNF302 1 43.0 Weakly correlated
139 ZNF304 1 99.0 Weakly correlated
140 ZNF331 1 94.0 Weakly correlated
141 ZNF334 1 99.0 Weakly correlated
142 ZNF33A 1 99.0 Weakly correlated
143 ZNF34 1 99.0 Weakly correlated
144 ZNF3 1 160.0 Weakly correlated
145 ZNF418 1 43.0 Weakly correlated
146 ZNF419 1 28.9 Weakly correlated
147 ZNF420 1 94.0 Weakly correlated
148 ZNF433 1 43.0 Weakly correlated
149 ZNF436 1 180.0 Weakly correlated
150 ZNF43 1 43.0 Weakly correlated
151 ZNF445 1 99.0 Weakly correlated
152 ZNF446 1 94.0 Weakly correlated
153 ZNF484 1 99.0 Weakly correlated
154 ZNF514 1 94.0 Weakly correlated
155 ZNF525 1 19.6 Weakly correlated
156 ZNF529 1 99.0 Weakly correlated
157 ZNF530 1 28.9 Weakly correlated
158 ZNF550 1 94.0 Weakly correlated
159 ZNF557 1 15.2 Weakly correlated
160 ZNF562 1 28.9 Weakly correlated
161 ZNF563 1 28.9 Weakly correlated
162 ZNF573 1 94.0 Weakly correlated
163 ZNF586 1 43.0 Weakly correlated
164 ZNF587B 1 8.6 Weakly correlated
165 ZNF616 1 43.0 Weakly correlated
166 ZNF620 1 99.0 Weakly correlated
167 ZNF626 1 0.0 Weakly correlated
168 ZNF649 1 28.9 Weakly correlated
169 ZNF667 1 99.0 Weakly correlated
170 ZNF674 1 99.0 Weakly correlated
171 ZNF675 1 8.6 Weakly correlated
172 ZNF695 1 28.9 Weakly correlated
173 ZNF700 1 28.9 Weakly correlated
174 ZNF705E 1 0.0 Weakly correlated
175 ZNF705G 1 28.9 Weakly correlated
176 ZNF709 1 87.0 Highly correlated
177 ZNF716 1 19.6 Weakly correlated
178 ZNF718 1 19.6 Weakly correlated
179 ZNF730 1 19.6 Weakly correlated
180 ZNF736 1 43.0 Weakly correlated
181 ZNF776 1 43.0 Weakly correlated
182 ZNF791 1 87.0 Highly correlated
183 ZNF808 1 19.6 Weakly correlated
184 ZNF845 1 28.9 Weakly correlated
185 ZNF878 1 43.0 Weakly correlated
186 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 508 94.0 Weakly correlated
2 ZNF723 224 15.2 Weakly correlated
3 ZNF382 82 99.0 Weakly correlated
4 ZNF160 69 74.0 Moderately correlated
5 ZNF136 64 74.0 Moderately correlated
6 ZNF471 59 94.0 Weakly correlated
7 ZNF248 50 99.0 Weakly correlated
8 ZNF490 47 43.0 Weakly correlated
9 ZIM3 42 87.0 Highly correlated
10 ZNF8 23 99.0 Weakly correlated
11 ZNF250 23 99.0 Weakly correlated
12 ZNF680 23 28.9 Weakly correlated
13 ZNF585A 22 99.0 Weakly correlated
14 ZNF486 20 8.6 Weakly correlated
15 ZNF84 19 99.0 Weakly correlated
16 ZNF317 15 99.0 Weakly correlated
17 ZNF101 14 43.0 Weakly correlated
18 ZNF92 14 28.9 Weakly correlated
19 ZNF479 9 6.4 Weakly correlated
20 ZNF766 9 43.0 Weakly correlated
21 ZNF263 8 180.0 Weakly correlated
22 ZNF140 8 99.0 Weakly correlated
23 ZNF534 8 19.6 Weakly correlated
24 ZNF324 7 99.0 Weakly correlated
25 ZNF793 6 99.0 Weakly correlated
26 ZNF202 5 160.0 Weakly correlated
27 ZNF485 5 94.0 Weakly correlated
28 ZNF707 5 74.0 Moderately correlated
29 ZNF264 5 99.0 Weakly correlated
30 ZNF705B 5 28.9 Weakly correlated
31 ZNF287 5 99.0 Weakly correlated
32 ZNF75D 5 94.0 Weakly correlated
33 ZFP28 5 99.0 Weakly correlated
34 ZFP57 4 87.0 Highly correlated
35 ZNF81 4 99.0 Weakly correlated
36 ZNF879 4 99.0 Weakly correlated
37 ZNF10 4 99.0 Weakly correlated
38 ZNF701 3 28.9 Weakly correlated
39 ZNF677 3 99.0 Weakly correlated
40 ZNF558 3 99.0 Weakly correlated
41 ZNF705D 3 28.9 Weakly correlated
42 ZNF483 3 99.0 Weakly correlated
43 ZNF320 3 28.9 Weakly correlated
44 ZNF337 3 43.0 Weakly correlated
45 ZFP90 2 99.0 Weakly correlated
46 ZNF175 2 94.0 Weakly correlated
47 ZNF133 2 99.0 Weakly correlated
48 ZNF583 2 99.0 Weakly correlated
49 ZKSCAN8 2 160.0 Weakly correlated
50 ZNF679 2 28.9 Weakly correlated
51 ZNF44 2 43.0 Weakly correlated
52 ZNF786 2 99.0 Weakly correlated
53 ZNF589 2 28.9 Weakly correlated
54 ZNF257 2 0.0 Weakly correlated
55 ZNF225 1 74.0 Moderately correlated
56 ZNF283 1 99.0 Weakly correlated
57 ZNF43 1 43.0 Weakly correlated
58 ZNF585B 1 99.0 Weakly correlated
59 ZNF141 1 43.0 Weakly correlated
60 ZNF282 1 319.0 Weakly correlated
61 ZNF778 1 74.0 Moderately correlated
62 ZNF28 1 28.9 Weakly correlated
63 ZNF519 1 19.6 Weakly correlated
64 ZNF506 1 28.9 Weakly correlated
65 ZNF26 1 99.0 Weakly correlated
66 ZKSCAN1 1 160.0 Weakly correlated
67 ZNF425 1 94.0 Weakly correlated
68 ZNF530 1 28.9 Weakly correlated
69 ZNF716 1 19.6 Weakly correlated
70 ZNF735 1 28.9 Weakly correlated
71 ZNF567 1 99.0 Weakly correlated
72 ZNF354A 1 99.0 Weakly correlated
73 ZNF510 1 99.0 Weakly correlated
74 ZNF610 1 28.9 Weakly correlated
75 ZNF528 1 43.0 Weakly correlated
76 ZNF792 1 94.0 Weakly correlated
77 ZNF641 1 99.0 Weakly correlated
78 ZNF695 1 28.9 Weakly correlated
79 ZNF682 1 28.9 Weakly correlated
80 ZNF560 1 43.0 Weakly correlated
81 ZNF549 1 87.0 Highly correlated
82 ZNF211 1 94.0 Weakly correlated
83 ZNF66 1 0.0 Weakly correlated
84 ZNF197 1 99.0 Weakly correlated
85 ZNF394 1 99.0 Weakly correlated
86 ZNF584 1 99.0 Weakly correlated
87 ZNF440 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF251 94.0 Weakly correlated
2 ZNF263 180.0 Weakly correlated
3 ZNF486 8.6 Weakly correlated
4 ZNF534 19.6 Weakly correlated
5 ZNF680 28.9 Weakly correlated
6 ZNF723 15.2 Weakly correlated
7 ZNF793 99.0 Weakly correlated
8 ZNF84 99.0 Weakly correlated
9 ZNF8 99.0 Weakly correlated
10 ZNF92 28.9 Weakly correlated