ZRdb KZFP & Repeats
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LINE_L1MA7_3END

  • Name
    L1MA7_3END
  • Repbase
    L1MA7
  • Type
    LINE
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000264
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaatatccaaaatatataaggaactcaaacaactcaatagcaagaaaacaaataacccgattaaaaaatgggcaaaggacctgaatagacatttctcaaaagaagacatacaaatggccaacagatatatgaaaaaatgctcaacatcactaatcatcagggaaatgcaaattaaaaccacaatgagatatcacctcacacctgttagaatggctattatcaaaaagacgaaagataacaagtgttggcgaggatgtggagaaaagggaacccttgtacactgttggtgggaatgtaaattagtacagccattatggaaaacagtatggaggttcctcaaaaaactaaaaatagaactaccatatgatccagcaatcccacttctgggtatatatccaaaggaattgaaatcagtatgtcgaagagatatctgcactcccatgttcattgcagcattattcacaatagccaagatatggaatcaacctaagtgtccatcaacggatgaatggataaagaaaatgtggtatatatacacaatggaatactattcagccttaaaaaagaaggaaattctgtcatttgcgacaacatggatgaacctggaggacattatgctaagtgaaataagccaggcacagaaagacaaataccgcatgatctcacttatatgtggaatctaaaaaagtcgaactcatagaagcagagagtagaatggtggttaccagaggctggggggtggggggaatggggagatgttggtcaaagggtacaaagtttcagttagacaggaggaataagttttngngatctattgcacagcatggtgactatagttaataataatgtattgtatatttcaaaattgctaagagagtagattttaaatgttctcaccacaaaaaaatgataagtatgtgaggtgatggatatgttaattagcttgatttaatcattccacantgtatacatatatcaaaacatcacattgtaccccataaatatatacaattattatttgtcaattaaaaataaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 355 94.0 Weakly correlated
2 ZNF382 306 99.0 Weakly correlated
3 ZNF723 138 15.2 Weakly correlated
4 ZIM3 65 87.0 Highly correlated
5 ZNF136 62 74.0 Moderately correlated
6 ZNF317 59 99.0 Weakly correlated
7 ZNF160 58 74.0 Moderately correlated
8 ZNF394 58 99.0 Weakly correlated
9 ZNF680 58 28.9 Weakly correlated
10 ZNF490 52 43.0 Weakly correlated
11 ZNF92 52 28.9 Weakly correlated
12 ZNF248 49 99.0 Weakly correlated
13 ZNF679 48 28.9 Weakly correlated
14 ZNF766 41 43.0 Weakly correlated
15 ZNF263 35 180.0 Weakly correlated
16 ZNF471 32 94.0 Weakly correlated
17 ZNF84 27 99.0 Weakly correlated
18 ZNF8 26 99.0 Weakly correlated
19 ZNF101 25 43.0 Weakly correlated
20 ZNF486 25 8.6 Weakly correlated
21 ZNF250 23 99.0 Weakly correlated
22 ZNF558 23 99.0 Weakly correlated
23 ZNF274 21 99.0 Weakly correlated
24 ZFP37 20 99.0 Weakly correlated
25 ZNF324 20 99.0 Weakly correlated
26 ZNF705B 19 28.9 Weakly correlated
27 ZNF584 17 99.0 Weakly correlated
28 ZNF610 16 28.9 Weakly correlated
29 ZNF2 15 99.0 Weakly correlated
30 ZNF534 15 19.6 Weakly correlated
31 ZNF583 15 99.0 Weakly correlated
32 ZNF320 13 28.9 Weakly correlated
33 ZNF479 13 6.4 Weakly correlated
34 ZNF585A 12 99.0 Weakly correlated
35 ZNF793 12 99.0 Weakly correlated
36 ZNF589 11 28.9 Weakly correlated
37 ZNF705D 11 28.9 Weakly correlated
38 ZFP69B 10 99.0 Weakly correlated
39 ZNF18 10 160.0 Weakly correlated
40 ZNF585B 10 99.0 Weakly correlated
41 ZNF75D 10 94.0 Weakly correlated
42 ZNF133 9 99.0 Weakly correlated
43 ZNF429 9 28.9 Weakly correlated
44 ZKSCAN8 8 160.0 Weakly correlated
45 ZNF140 8 99.0 Weakly correlated
46 ZNF182 8 99.0 Weakly correlated
47 ZNF485 8 94.0 Weakly correlated
48 ZNF554 8 99.0 Weakly correlated
49 ZNF701 8 28.9 Weakly correlated
50 ZNF175 7 94.0 Weakly correlated
51 ZNF257 7 0.0 Weakly correlated
52 ZFP28 6 99.0 Weakly correlated
53 ZNF337 6 43.0 Weakly correlated
54 ZNF547 6 74.0 Moderately correlated
55 ZNF549 6 87.0 Highly correlated
56 ZFP57 5 87.0 Highly correlated
57 ZNF10 5 99.0 Weakly correlated
58 ZNF287 5 99.0 Weakly correlated
59 ZNF441 5 43.0 Weakly correlated
60 ZNF528 5 43.0 Weakly correlated
61 ZNF597 5 94.0 Weakly correlated
62 ZNF707 5 74.0 Moderately correlated
63 ZNF17 4 69.0 Weakly correlated
64 ZNF197 4 99.0 Weakly correlated
65 ZNF331 4 94.0 Weakly correlated
66 ZNF354A 4 99.0 Weakly correlated
67 ZNF425 4 94.0 Weakly correlated
68 ZNF519 4 19.6 Weakly correlated
69 ZNF559 4 74.0 Moderately correlated
70 ZNF641 4 99.0 Weakly correlated
71 ZNF677 4 99.0 Weakly correlated
72 ZNF682 4 28.9 Weakly correlated
73 ZNF786 4 99.0 Weakly correlated
74 ZNF792 4 94.0 Weakly correlated
75 ZNF81 4 99.0 Weakly correlated
76 ZNF879 4 99.0 Weakly correlated
77 ZNF124 3 43.0 Weakly correlated
78 ZNF135 3 94.0 Weakly correlated
79 ZNF264 3 99.0 Weakly correlated
80 ZNF284 3 43.0 Weakly correlated
81 ZNF28 3 28.9 Weakly correlated
82 ZNF506 3 28.9 Weakly correlated
83 ZNF563 3 28.9 Weakly correlated
84 ZNF675 3 8.6 Weakly correlated
85 ZNF695 3 28.9 Weakly correlated
86 ZNF735 3 28.9 Weakly correlated
87 ZNF823 3 43.0 Weakly correlated
88 ZNF878 3 43.0 Weakly correlated
89 ZFP90 2 99.0 Weakly correlated
90 ZKSCAN1 2 160.0 Weakly correlated
91 ZKSCAN5 2 160.0 Weakly correlated
92 ZNF347 2 43.0 Weakly correlated
93 ZNF41 2 99.0 Weakly correlated
94 ZNF510 2 99.0 Weakly correlated
95 ZNF568 2 99.0 Weakly correlated
96 ZNF607 2 43.0 Weakly correlated
97 ZNF613 2 99.0 Weakly correlated
98 ZNF681 2 28.9 Weakly correlated
99 ZNF700 2 28.9 Weakly correlated
100 ZNF808 2 19.6 Weakly correlated
101 ZNF91 2 6.0 Weakly correlated
102 ZFP69 1 99.0 Weakly correlated
103 ZFP82 1 99.0 Weakly correlated
104 ZIK1 1 87.0 Highly correlated
105 ZNF100 1 28.9 Weakly correlated
106 ZNF114 1 28.9 Weakly correlated
107 ZNF141 1 43.0 Weakly correlated
108 ZNF184 1 99.0 Weakly correlated
109 ZNF202 1 160.0 Weakly correlated
110 ZNF211 1 94.0 Weakly correlated
111 ZNF222 1 43.0 Weakly correlated
112 ZNF225 1 74.0 Moderately correlated
113 ZNF230 1 28.9 Weakly correlated
114 ZNF26 1 99.0 Weakly correlated
115 ZNF273 1 28.9 Weakly correlated
116 ZNF283 1 99.0 Weakly correlated
117 ZNF304 1 99.0 Weakly correlated
118 ZNF334 1 99.0 Weakly correlated
119 ZNF440 1 28.9 Weakly correlated
120 ZNF468 1 28.9 Weakly correlated
121 ZNF483 1 99.0 Weakly correlated
122 ZNF530 1 28.9 Weakly correlated
123 ZNF557 1 15.2 Weakly correlated
124 ZNF586 1 43.0 Weakly correlated
125 ZNF671 1 94.0 Weakly correlated
126 ZNF674 1 99.0 Weakly correlated
127 ZNF684 1 99.0 Weakly correlated
128 ZNF778 1 74.0 Moderately correlated
129 ZNF780A 1 43.0 Weakly correlated
130 ZNF799 1 43.0 Weakly correlated
131 ZNF813 1 28.9 Weakly correlated
132 ZNF845 1 28.9 Weakly correlated
133 ZNF850 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 313 94.0 Weakly correlated
2 ZNF723 120 15.2 Weakly correlated
3 ZNF136 52 74.0 Moderately correlated
4 ZNF160 50 74.0 Moderately correlated
5 ZNF382 47 99.0 Weakly correlated
6 ZNF248 46 99.0 Weakly correlated
7 ZNF490 44 43.0 Weakly correlated
8 ZIM3 38 87.0 Highly correlated
9 ZNF84 27 99.0 Weakly correlated
10 ZNF471 27 94.0 Weakly correlated
11 ZNF92 24 28.9 Weakly correlated
12 ZNF8 21 99.0 Weakly correlated
13 ZNF250 21 99.0 Weakly correlated
14 ZNF486 17 8.6 Weakly correlated
15 ZNF680 17 28.9 Weakly correlated
16 ZNF101 14 43.0 Weakly correlated
17 ZNF317 12 99.0 Weakly correlated
18 ZNF585A 11 99.0 Weakly correlated
19 ZNF534 6 19.6 Weakly correlated
20 ZNF558 6 99.0 Weakly correlated
21 ZNF133 6 99.0 Weakly correlated
22 ZNF263 5 180.0 Weakly correlated
23 ZNF766 5 43.0 Weakly correlated
24 ZNF337 5 43.0 Weakly correlated
25 ZNF793 4 99.0 Weakly correlated
26 ZNF707 4 74.0 Moderately correlated
27 ZNF479 4 6.4 Weakly correlated
28 ZNF75D 4 94.0 Weakly correlated
29 ZNF287 4 99.0 Weakly correlated
30 ZNF140 4 99.0 Weakly correlated
31 ZNF10 4 99.0 Weakly correlated
32 ZNF324 4 99.0 Weakly correlated
33 ZNF354A 3 99.0 Weakly correlated
34 ZNF81 3 99.0 Weakly correlated
35 ZNF879 3 99.0 Weakly correlated
36 ZNF257 3 0.0 Weakly correlated
37 ZNF675 3 8.6 Weakly correlated
38 ZNF485 2 94.0 Weakly correlated
39 ZFP57 2 87.0 Highly correlated
40 ZNF701 2 28.9 Weakly correlated
41 ZNF583 2 99.0 Weakly correlated
42 ZNF347 2 43.0 Weakly correlated
43 ZNF331 2 94.0 Weakly correlated
44 ZNF585B 2 99.0 Weakly correlated
45 ZNF320 2 28.9 Weakly correlated
46 ZKSCAN5 2 160.0 Weakly correlated
47 ZNF735 2 28.9 Weakly correlated
48 ZFP28 2 99.0 Weakly correlated
49 ZNF394 2 99.0 Weakly correlated
50 ZIK1 1 87.0 Highly correlated
51 ZKSCAN1 1 160.0 Weakly correlated
52 ZFP90 1 99.0 Weakly correlated
53 ZFP82 1 99.0 Weakly correlated
54 ZNF677 1 99.0 Weakly correlated
55 ZNF519 1 19.6 Weakly correlated
56 ZNF705D 1 28.9 Weakly correlated
57 ZNF597 1 94.0 Weakly correlated
58 ZNF2 1 99.0 Weakly correlated
59 ZNF674 1 99.0 Weakly correlated
60 ZNF679 1 28.9 Weakly correlated
61 ZNF705B 1 28.9 Weakly correlated
62 ZNF695 1 28.9 Weakly correlated
63 ZNF563 1 28.9 Weakly correlated
64 ZNF483 1 99.0 Weakly correlated
65 ZNF197 1 99.0 Weakly correlated
66 ZNF225 1 74.0 Moderately correlated
67 ZNF528 1 43.0 Weakly correlated
68 ZNF568 1 99.0 Weakly correlated
69 ZNF671 1 94.0 Weakly correlated
70 ZNF684 1 99.0 Weakly correlated
71 ZNF780A 1 43.0 Weakly correlated
72 ZNF778 1 74.0 Moderately correlated
73 ZNF786 1 99.0 Weakly correlated
74 ZNF141 1 43.0 Weakly correlated
75 ZNF799 1 43.0 Weakly correlated
76 ZNF440 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF133 99.0 Weakly correlated
2 ZNF251 94.0 Weakly correlated
3 ZNF486 8.6 Weakly correlated
4 ZNF680 28.9 Weakly correlated
5 ZNF723 15.2 Weakly correlated
6 ZNF84 99.0 Weakly correlated
7 ZNF8 99.0 Weakly correlated
8 ZNF92 28.9 Weakly correlated