ZRdb KZFP & Repeats
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LINE_L1MA6_3END

  • Name
    L1MA6_3END
  • Repbase
    L1MA6
  • Type
    LINE
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000263
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaatatccagaatatataaggaactcaaacaactcaatagcaaaaaaacaaataacccgattnaaaaatgggcaaaagacctgaatagacatttctcaaaagaagacatacaaatggccaacaggtatatgaaaaaatgctcaacatcactaatcatcagggaaatgcaaatcaaaaccacaatgagatatcacctcaccccagttagaatggctattatcaaaaagacaaaagataacaagtgttggcgaggatgtggagaaaagggaacncttacacactgttggtgggaatgtaaattagtacagccattatggaaaacagtatggaggttcctcaaaaaattaaaaatagaactaccatatgatccagcaatcccactactgggtatatatccaaaggaaatgaaatcagtatgtcgaagagatatctgcactcccatgtttattgcagcactattcacaatagccaagatatggaatcaacctaagtgtccatcaacggatgaatggataaagaaaatgtggtatatatacacaatggaatactattcagccataaaaaagaatgaaatcctgtcatttgcgacaacatggatgaacctggaggacattatgttaagtgaaataagccaggcacagaaagacaaataccgcatgatctcactcatatgtggaatctaaaaaagttgatctcatagaagtagagagtagaatagtggttaccagaggctggggagggtagggggagggggggatggggagaggttggtcaacgggtacaaagttacagttagataggaggaataagttctggtgttctattgcacagtagggtgactatagttaacaataatgtattgtatatttcaaaatagctagaagagaggattttgaatgttctcaccacaaagaaatgataaatgtttgaggtgatggatatgctaattaccctgatttgatcattacacaatgtatacatgtatcgaaacatcacactgtaccccataaatatgtacaattattatgtgtcaattaaaaataaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 314 99.0 Weakly correlated
2 ZNF251 301 94.0 Weakly correlated
3 ZNF723 132 15.2 Weakly correlated
4 ZNF160 68 74.0 Moderately correlated
5 ZNF136 65 74.0 Moderately correlated
6 ZNF394 56 99.0 Weakly correlated
7 ZNF490 50 43.0 Weakly correlated
8 ZIM3 49 87.0 Highly correlated
9 ZNF248 45 99.0 Weakly correlated
10 ZNF680 40 28.9 Weakly correlated
11 ZNF317 39 99.0 Weakly correlated
12 ZNF92 38 28.9 Weakly correlated
13 ZFP37 35 99.0 Weakly correlated
14 ZNF766 33 43.0 Weakly correlated
15 ZNF679 32 28.9 Weakly correlated
16 ZNF471 31 94.0 Weakly correlated
17 ZNF486 30 8.6 Weakly correlated
18 ZNF263 29 180.0 Weakly correlated
19 ZNF2 24 99.0 Weakly correlated
20 ZNF705B 19 28.9 Weakly correlated
21 ZNF101 18 43.0 Weakly correlated
22 ZNF324 18 99.0 Weakly correlated
23 ZNF8 18 99.0 Weakly correlated
24 ZNF250 17 99.0 Weakly correlated
25 ZNF558 17 99.0 Weakly correlated
26 ZNF84 16 99.0 Weakly correlated
27 ZNF534 15 19.6 Weakly correlated
28 ZNF705D 15 28.9 Weakly correlated
29 ZNF18 14 160.0 Weakly correlated
30 ZNF585A 13 99.0 Weakly correlated
31 ZNF274 12 99.0 Weakly correlated
32 ZFP57 11 87.0 Highly correlated
33 ZNF786 11 99.0 Weakly correlated
34 ZNF337 10 43.0 Weakly correlated
35 ZNF479 10 6.4 Weakly correlated
36 ZNF793 10 99.0 Weakly correlated
37 ZNF610 9 28.9 Weakly correlated
38 ZFP69B 8 99.0 Weakly correlated
39 ZNF585B 8 99.0 Weakly correlated
40 ZNF589 8 28.9 Weakly correlated
41 ZKSCAN1 7 160.0 Weakly correlated
42 ZNF182 7 99.0 Weakly correlated
43 ZNF547 7 74.0 Moderately correlated
44 ZNF133 6 99.0 Weakly correlated
45 ZNF175 6 94.0 Weakly correlated
46 ZNF202 6 160.0 Weakly correlated
47 ZNF506 6 28.9 Weakly correlated
48 ZNF257 5 0.0 Weakly correlated
49 ZNF334 5 99.0 Weakly correlated
50 ZNF41 5 99.0 Weakly correlated
51 ZNF425 5 94.0 Weakly correlated
52 ZNF519 5 19.6 Weakly correlated
53 ZNF583 5 99.0 Weakly correlated
54 ZKSCAN8 4 160.0 Weakly correlated
55 ZNF28 4 28.9 Weakly correlated
56 ZNF320 4 28.9 Weakly correlated
57 ZNF429 4 28.9 Weakly correlated
58 ZNF43 4 43.0 Weakly correlated
59 ZNF441 4 43.0 Weakly correlated
60 ZNF483 4 99.0 Weakly correlated
61 ZNF528 4 43.0 Weakly correlated
62 ZNF554 4 99.0 Weakly correlated
63 ZNF597 4 94.0 Weakly correlated
64 ZNF677 4 99.0 Weakly correlated
65 ZNF75D 4 94.0 Weakly correlated
66 ZNF777 4 319.0 Weakly correlated
67 ZFP28 3 99.0 Weakly correlated
68 ZFP30 3 99.0 Weakly correlated
69 ZNF140 3 99.0 Weakly correlated
70 ZNF197 3 99.0 Weakly correlated
71 ZNF222 3 43.0 Weakly correlated
72 ZNF26 3 99.0 Weakly correlated
73 ZNF331 3 94.0 Weakly correlated
74 ZNF354A 3 99.0 Weakly correlated
75 ZNF485 3 94.0 Weakly correlated
76 ZNF584 3 99.0 Weakly correlated
77 ZNF701 3 28.9 Weakly correlated
78 ZNF707 3 74.0 Moderately correlated
79 ZNF735 3 28.9 Weakly correlated
80 ZNF792 3 94.0 Weakly correlated
81 ZNF823 3 43.0 Weakly correlated
82 ZNF85 3 28.9 Weakly correlated
83 ZNF879 3 99.0 Weakly correlated
84 ZFP69 2 99.0 Weakly correlated
85 ZKSCAN5 2 160.0 Weakly correlated
86 ZNF141 2 43.0 Weakly correlated
87 ZNF17 2 69.0 Weakly correlated
88 ZNF211 2 94.0 Weakly correlated
89 ZNF224 2 69.0 Weakly correlated
90 ZNF560 2 43.0 Weakly correlated
91 ZNF700 2 28.9 Weakly correlated
92 ZNF730 2 19.6 Weakly correlated
93 ZNF780A 2 43.0 Weakly correlated
94 ZNF878 2 43.0 Weakly correlated
95 ZNF10 1 99.0 Weakly correlated
96 ZNF135 1 94.0 Weakly correlated
97 ZNF230 1 28.9 Weakly correlated
98 ZNF273 1 28.9 Weakly correlated
99 ZNF284 1 43.0 Weakly correlated
100 ZNF287 1 99.0 Weakly correlated
101 ZNF30 1 94.0 Weakly correlated
102 ZNF33A 1 99.0 Weakly correlated
103 ZNF347 1 43.0 Weakly correlated
104 ZNF383 1 99.0 Weakly correlated
105 ZNF420 1 94.0 Weakly correlated
106 ZNF440 1 28.9 Weakly correlated
107 ZNF461 1 99.0 Weakly correlated
108 ZNF468 1 28.9 Weakly correlated
109 ZNF559 1 74.0 Moderately correlated
110 ZNF563 1 28.9 Weakly correlated
111 ZNF586 1 43.0 Weakly correlated
112 ZNF616 1 43.0 Weakly correlated
113 ZNF667 1 99.0 Weakly correlated
114 ZNF675 1 8.6 Weakly correlated
115 ZNF682 1 28.9 Weakly correlated
116 ZNF695 1 28.9 Weakly correlated
117 ZNF736 1 43.0 Weakly correlated
118 ZNF799 1 43.0 Weakly correlated
119 ZNF808 1 19.6 Weakly correlated
120 ZNF91 1 6.0 Weakly correlated
121 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 271 94.0 Weakly correlated
2 ZNF723 116 15.2 Weakly correlated
3 ZNF382 65 99.0 Weakly correlated
4 ZNF160 63 74.0 Moderately correlated
5 ZNF136 50 74.0 Moderately correlated
6 ZNF490 47 43.0 Weakly correlated
7 ZNF248 37 99.0 Weakly correlated
8 ZIM3 29 87.0 Highly correlated
9 ZNF471 25 94.0 Weakly correlated
10 ZNF250 17 99.0 Weakly correlated
11 ZNF84 16 99.0 Weakly correlated
12 ZNF486 14 8.6 Weakly correlated
13 ZNF8 11 99.0 Weakly correlated
14 ZNF680 11 28.9 Weakly correlated
15 ZNF92 10 28.9 Weakly correlated
16 ZNF585A 9 99.0 Weakly correlated
17 ZNF337 9 43.0 Weakly correlated
18 ZNF101 8 43.0 Weakly correlated
19 ZNF534 7 19.6 Weakly correlated
20 ZNF317 6 99.0 Weakly correlated
21 ZNF479 6 6.4 Weakly correlated
22 ZNF786 6 99.0 Weakly correlated
23 ZNF263 5 180.0 Weakly correlated
24 ZNF705B 5 28.9 Weakly correlated
25 ZFP57 5 87.0 Highly correlated
26 ZNF585B 4 99.0 Weakly correlated
27 ZNF324 4 99.0 Weakly correlated
28 ZNF677 4 99.0 Weakly correlated
29 ZNF705D 4 28.9 Weakly correlated
30 ZNF2 3 99.0 Weakly correlated
31 ZNF140 3 99.0 Weakly correlated
32 ZNF558 3 99.0 Weakly correlated
33 ZNF879 2 99.0 Weakly correlated
34 ZNF793 2 99.0 Weakly correlated
35 ZNF26 2 99.0 Weakly correlated
36 ZNF75D 2 94.0 Weakly correlated
37 ZNF707 2 74.0 Moderately correlated
38 ZFP69 2 99.0 Weakly correlated
39 ZNF483 2 99.0 Weakly correlated
40 ZNF485 2 94.0 Weakly correlated
41 ZNF211 2 94.0 Weakly correlated
42 ZNF274 1 99.0 Weakly correlated
43 ZNF675 1 8.6 Weakly correlated
44 ZNF257 1 0.0 Weakly correlated
45 ZNF287 1 99.0 Weakly correlated
46 ZNF347 1 43.0 Weakly correlated
47 ZNF701 1 28.9 Weakly correlated
48 ZNF735 1 28.9 Weakly correlated
49 ZNF334 1 99.0 Weakly correlated
50 ZNF560 1 43.0 Weakly correlated
51 ZNF554 1 99.0 Weakly correlated
52 ZFP37 1 99.0 Weakly correlated
53 ZKSCAN5 1 160.0 Weakly correlated
54 ZNF10 1 99.0 Weakly correlated
55 ZNF133 1 99.0 Weakly correlated
56 ZNF17 1 69.0 Weakly correlated
57 ZNF182 1 99.0 Weakly correlated
58 ZNF320 1 28.9 Weakly correlated
59 ZNF394 1 99.0 Weakly correlated
60 ZNF528 1 43.0 Weakly correlated
61 ZNF331 1 94.0 Weakly correlated
62 ZNF354A 1 99.0 Weakly correlated
63 ZNF506 1 28.9 Weakly correlated
64 ZNF563 1 28.9 Weakly correlated
65 ZNF777 1 319.0 Weakly correlated
66 ZNF597 1 94.0 Weakly correlated
67 ZNF18 1 160.0 Weakly correlated
68 ZFP28 1 99.0 Weakly correlated
69 ZNF679 1 28.9 Weakly correlated
70 ZNF766 1 43.0 Weakly correlated
71 ZNF175 1 94.0 Weakly correlated
72 ZNF41 1 99.0 Weakly correlated
73 ZNF425 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF251 94.0 Weakly correlated
2 ZNF471 94.0 Weakly correlated
3 ZNF486 8.6 Weakly correlated
4 ZNF680 28.9 Weakly correlated
5 ZNF723 15.2 Weakly correlated
6 ZNF84 99.0 Weakly correlated
7 ZNF8 99.0 Weakly correlated
8 ZNF92 28.9 Weakly correlated