ZRdb KZFP & Repeats
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LINE_L1MA5_3END

  • Name
    L1MA5_3END
  • Repbase
    L1MA5
  • Type
    LINE
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000261
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaatatccagaatatacaaggaactcaaacaactcaacagcaaaaaaacaaataatccgattnaaaaatgggcaaangatctgaatagacatttctcaaaagaagacatacaaatggccaacaggtatatgaaaaaatgctcaacatcactaatcatcagggaaatgcaaatcaaaaccacaatgagatatcatctcaccccagttagaatggctattatcaaaaagacaaaaaataacaaatgctggcgaggatgcggagaaaagggaactcttatacactgttggtgggaatgtaaattagtacagccattatggaaaacagtatggaggttcctcaaaaaactaaaaatagaactaccatatgatccagcaatcccactactgggtatntatccaaaggaaaggaaatcagtatgtcgaagagatatctgcactcccatgtttattgcagcactattcacaatagccaagatatggaatcaacctaagtgtccatcaacagatgaatggataaagaaaatgtggtatatatacacaatggaatactattcagccataaaaaagaatgaaatcctgtcattcgcggcaacatggatgagcctggaggacattatgttaagtgaaataagccaggcacagaaagataaataccgcatgttctcactcatatgtggaagctaaaaaagttgatctcatagaagtagagagtagaatngtggttactagaggctgggaagggtagggggagggggggatagggagaggttggttaacggatacaaaattacagctagataggaggaataagttctagtgttctatagcactgtagggtgactatagttaacaataatttattgtatattttcaaatagctagaagagaggattttgaatgttcccaacacaaagaaatgataaatgtttgaggtgatggatatgctaattaccctgatttgatcattacacattgtatacatgtatcgaaatatcacnctgtaccccataaatatgtacaattattacgtgtcaattaaaaataaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 388 99.0 Weakly correlated
2 ZNF251 212 94.0 Weakly correlated
3 ZNF723 119 15.2 Weakly correlated
4 ZIM3 84 87.0 Highly correlated
5 ZNF136 80 74.0 Moderately correlated
6 ZNF490 74 43.0 Weakly correlated
7 ZNF317 64 99.0 Weakly correlated
8 ZNF160 63 74.0 Moderately correlated
9 ZNF680 59 28.9 Weakly correlated
10 ZNF471 55 94.0 Weakly correlated
11 ZNF394 45 99.0 Weakly correlated
12 ZNF679 43 28.9 Weakly correlated
13 ZNF248 35 99.0 Weakly correlated
14 ZNF263 32 180.0 Weakly correlated
15 ZNF766 32 43.0 Weakly correlated
16 ZNF92 30 28.9 Weakly correlated
17 ZNF486 28 8.6 Weakly correlated
18 ZFP37 24 99.0 Weakly correlated
19 ZNF558 24 99.0 Weakly correlated
20 ZNF250 19 99.0 Weakly correlated
21 ZNF101 16 43.0 Weakly correlated
22 ZNF2 16 99.0 Weakly correlated
23 ZNF793 16 99.0 Weakly correlated
24 ZNF274 14 99.0 Weakly correlated
25 ZNF337 14 43.0 Weakly correlated
26 ZNF705B 14 28.9 Weakly correlated
27 ZNF324 13 99.0 Weakly correlated
28 ZNF8 13 99.0 Weakly correlated
29 ZNF18 12 160.0 Weakly correlated
30 ZNF583 12 99.0 Weakly correlated
31 ZNF84 12 99.0 Weakly correlated
32 ZNF182 11 99.0 Weakly correlated
33 ZNF554 11 99.0 Weakly correlated
34 ZNF705D 11 28.9 Weakly correlated
35 ZNF133 10 99.0 Weakly correlated
36 ZNF140 10 99.0 Weakly correlated
37 ZNF534 10 19.6 Weakly correlated
38 ZNF585A 10 99.0 Weakly correlated
39 ZNF479 9 6.4 Weakly correlated
40 ZFP28 8 99.0 Weakly correlated
41 ZFP69B 8 99.0 Weakly correlated
42 ZNF597 7 94.0 Weakly correlated
43 ZNF75D 7 94.0 Weakly correlated
44 ZNF786 7 99.0 Weakly correlated
45 ZNF879 7 99.0 Weakly correlated
46 ZNF425 6 94.0 Weakly correlated
47 ZNF585B 6 99.0 Weakly correlated
48 ZKSCAN1 5 160.0 Weakly correlated
49 ZNF175 5 94.0 Weakly correlated
50 ZNF589 5 28.9 Weakly correlated
51 ZNF135 4 94.0 Weakly correlated
52 ZNF197 4 99.0 Weakly correlated
53 ZNF257 4 0.0 Weakly correlated
54 ZNF506 4 28.9 Weakly correlated
55 ZNF519 4 19.6 Weakly correlated
56 ZNF547 4 74.0 Moderately correlated
57 ZNF549 4 87.0 Highly correlated
58 ZNF641 4 99.0 Weakly correlated
59 ZNF701 4 28.9 Weakly correlated
60 ZNF823 4 43.0 Weakly correlated
61 ZFP57 3 87.0 Highly correlated
62 ZNF202 3 160.0 Weakly correlated
63 ZNF273 3 28.9 Weakly correlated
64 ZNF28 3 28.9 Weakly correlated
65 ZNF331 3 94.0 Weakly correlated
66 ZNF610 3 28.9 Weakly correlated
67 ZNF695 3 28.9 Weakly correlated
68 ZNF792 3 94.0 Weakly correlated
69 ZNF114 2 28.9 Weakly correlated
70 ZNF141 2 43.0 Weakly correlated
71 ZNF189 2 99.0 Weakly correlated
72 ZNF253 2 19.6 Weakly correlated
73 ZNF282 2 319.0 Weakly correlated
74 ZNF287 2 99.0 Weakly correlated
75 ZNF30 2 94.0 Weakly correlated
76 ZNF320 2 28.9 Weakly correlated
77 ZNF33A 2 99.0 Weakly correlated
78 ZNF41 2 99.0 Weakly correlated
79 ZNF44 2 43.0 Weakly correlated
80 ZNF45 2 99.0 Weakly correlated
81 ZNF483 2 99.0 Weakly correlated
82 ZNF510 2 99.0 Weakly correlated
83 ZNF528 2 43.0 Weakly correlated
84 ZNF563 2 28.9 Weakly correlated
85 ZNF584 2 99.0 Weakly correlated
86 ZNF586 2 43.0 Weakly correlated
87 ZNF658 2 99.0 Weakly correlated
88 ZNF675 2 8.6 Weakly correlated
89 ZNF707 2 74.0 Moderately correlated
90 ZNF730 2 19.6 Weakly correlated
91 ZNF735 2 28.9 Weakly correlated
92 ZNF81 2 99.0 Weakly correlated
93 PRDM9 1 0.0 Weakly correlated
94 ZIK1 1 87.0 Highly correlated
95 ZKSCAN5 1 160.0 Weakly correlated
96 ZKSCAN8 1 160.0 Weakly correlated
97 ZNF12 1 99.0 Weakly correlated
98 ZNF169 1 94.0 Weakly correlated
99 ZNF17 1 69.0 Weakly correlated
100 ZNF224 1 69.0 Weakly correlated
101 ZNF230 1 28.9 Weakly correlated
102 ZNF26 1 99.0 Weakly correlated
103 ZNF284 1 43.0 Weakly correlated
104 ZNF347 1 43.0 Weakly correlated
105 ZNF420 1 94.0 Weakly correlated
106 ZNF432 1 99.0 Weakly correlated
107 ZNF433 1 43.0 Weakly correlated
108 ZNF43 1 43.0 Weakly correlated
109 ZNF559 1 74.0 Moderately correlated
110 ZNF560 1 43.0 Weakly correlated
111 ZNF568 1 99.0 Weakly correlated
112 ZNF573 1 94.0 Weakly correlated
113 ZNF616 1 43.0 Weakly correlated
114 ZNF626 1 0.0 Weakly correlated
115 ZNF765 1 8.6 Weakly correlated
116 ZNF778 1 74.0 Moderately correlated
117 ZNF799 1 43.0 Weakly correlated
118 ZNF808 1 19.6 Weakly correlated
119 ZNF813 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 189 94.0 Weakly correlated
2 ZNF723 100 15.2 Weakly correlated
3 ZNF490 67 43.0 Weakly correlated
4 ZNF382 66 99.0 Weakly correlated
5 ZNF136 60 74.0 Moderately correlated
6 ZNF160 57 74.0 Moderately correlated
7 ZIM3 54 87.0 Highly correlated
8 ZNF471 50 94.0 Weakly correlated
9 ZNF248 30 99.0 Weakly correlated
10 ZNF680 21 28.9 Weakly correlated
11 ZNF250 18 99.0 Weakly correlated
12 ZNF486 16 8.6 Weakly correlated
13 ZNF317 15 99.0 Weakly correlated
14 ZNF8 12 99.0 Weakly correlated
15 ZNF337 11 43.0 Weakly correlated
16 ZNF101 10 43.0 Weakly correlated
17 ZNF793 8 99.0 Weakly correlated
18 ZNF84 8 99.0 Weakly correlated
19 ZNF534 7 19.6 Weakly correlated
20 ZNF585A 7 99.0 Weakly correlated
21 ZNF324 6 99.0 Weakly correlated
22 ZNF263 6 180.0 Weakly correlated
23 ZNF92 5 28.9 Weakly correlated
24 ZNF140 5 99.0 Weakly correlated
25 ZNF558 4 99.0 Weakly correlated
26 ZNF133 4 99.0 Weakly correlated
27 ZNF766 4 43.0 Weakly correlated
28 ZNF786 4 99.0 Weakly correlated
29 ZNF705D 3 28.9 Weakly correlated
30 ZFP28 3 99.0 Weakly correlated
31 ZNF479 3 6.4 Weakly correlated
32 ZNF75D 3 94.0 Weakly correlated
33 ZNF879 3 99.0 Weakly correlated
34 ZNF44 2 43.0 Weakly correlated
35 ZNF554 2 99.0 Weakly correlated
36 ZNF641 2 99.0 Weakly correlated
37 ZNF81 2 99.0 Weakly correlated
38 ZNF735 2 28.9 Weakly correlated
39 ZNF18 2 160.0 Weakly correlated
40 ZNF331 2 94.0 Weakly correlated
41 ZNF679 2 28.9 Weakly correlated
42 ZFP37 2 99.0 Weakly correlated
43 ZFP57 2 87.0 Highly correlated
44 ZNF707 2 74.0 Moderately correlated
45 ZNF506 2 28.9 Weakly correlated
46 ZNF202 2 160.0 Weakly correlated
47 ZNF287 2 99.0 Weakly correlated
48 ZNF585B 2 99.0 Weakly correlated
49 ZNF705B 2 28.9 Weakly correlated
50 ZKSCAN5 1 160.0 Weakly correlated
51 ZNF675 1 8.6 Weakly correlated
52 ZNF586 1 43.0 Weakly correlated
53 ZIK1 1 87.0 Highly correlated
54 ZNF483 1 99.0 Weakly correlated
55 ZNF528 1 43.0 Weakly correlated
56 ZNF549 1 87.0 Highly correlated
57 ZNF563 1 28.9 Weakly correlated
58 ZNF45 1 99.0 Weakly correlated
59 ZNF823 1 43.0 Weakly correlated
60 ZNF274 1 99.0 Weakly correlated
61 ZNF2 1 99.0 Weakly correlated
62 ZNF33A 1 99.0 Weakly correlated
63 ZNF433 1 43.0 Weakly correlated
64 ZNF547 1 74.0 Moderately correlated
65 ZNF695 1 28.9 Weakly correlated
66 ZNF347 1 43.0 Weakly correlated
67 ZNF182 1 99.0 Weakly correlated
68 ZNF425 1 94.0 Weakly correlated
69 ZNF432 1 99.0 Weakly correlated
70 ZNF573 1 94.0 Weakly correlated
71 ZNF597 1 94.0 Weakly correlated
72 ZNF253 1 19.6 Weakly correlated
73 ZNF730 1 19.6 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF251 94.0 Weakly correlated
2 ZNF263 180.0 Weakly correlated
3 ZNF486 8.6 Weakly correlated
4 ZNF680 28.9 Weakly correlated
5 ZNF723 15.2 Weakly correlated
6 ZNF84 99.0 Weakly correlated
7 ZNF8 99.0 Weakly correlated