ZRdb KZFP & Repeats
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LINE_L1MA5A_3END

  • Name
    L1MA5A_3END
  • Repbase
    L1MA5A
  • Type
    LINE
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000262
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaatatccagaatatacaaggaactcaaacatctcaacagcaaaaaaacaaacaatccgattnaaaaatgggcaaatgatctgaacagacatttctcaaaagaagacatacaaatggccaacaaatatatgaaaaaatgctcaacatcactaatcatcagggaaatgcaaatcaaaaccacaatgaggtatcatctcaccccagttaggatggctattatcaaaaagacaaaaaataacaaatgctggcgaggatgcggagaaaagggaactcttatacactgttggtgggaatgtaaactagtacagccactatggagaacagtatggaggttcctcaaaaaactacaaatagaactaccatatgatccagcaatcccactactgggcatttatccaaaggaaaggaaatcagtatatcgaagagacatctgcacccccatgtttattgcagcactattcacaatagccaagatatggaatcaacctaggtgtccaacaacagatgaatggataaagaaaatgtggtatatatacacaatggaatactattcagccataaaaaagaatgaaatcctgtcattcgcggcaacatggatggaactggaggacattatgttaagtgaaataagccaggaacagaaagttaaacaccgcatgttctcactcatatgtggaagctaaaaaaagttgatctcatagaagtaaaaagtagaacagaggatactagaggctgggaagggtagggggaagggggggatagggagagatttgttaaaggatacaaaattacagctagataggaggaataagttctagtgttctatancactgtaggatgactatagttaacaataatatattatatagtttcaaatagctagaaggaggatattgaatgttcccaacacaaagaaatgataaatgtttgagatgatggatatgctaattaccctgatctgatcactatacattatatgtatcgaaacatcactatgtaccccatgaatatgtacaattattatntgtcaattaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 370 99.0 Weakly correlated
2 ZNF251 126 94.0 Weakly correlated
3 ZIM3 57 87.0 Highly correlated
4 ZNF766 42 43.0 Weakly correlated
5 ZNF317 40 99.0 Weakly correlated
6 ZNF793 40 99.0 Weakly correlated
7 ZNF490 36 43.0 Weakly correlated
8 ZNF136 35 74.0 Moderately correlated
9 ZNF160 33 74.0 Moderately correlated
10 ZNF679 31 28.9 Weakly correlated
11 ZNF248 29 99.0 Weakly correlated
12 ZNF680 29 28.9 Weakly correlated
13 ZNF92 29 28.9 Weakly correlated
14 ZNF723 28 15.2 Weakly correlated
15 ZNF84 24 99.0 Weakly correlated
16 ZNF394 22 99.0 Weakly correlated
17 ZNF705B 22 28.9 Weakly correlated
18 ZFP37 19 99.0 Weakly correlated
19 ZNF2 16 99.0 Weakly correlated
20 ZNF324 16 99.0 Weakly correlated
21 ZNF263 15 180.0 Weakly correlated
22 ZNF8 15 99.0 Weakly correlated
23 ZNF75D 12 94.0 Weakly correlated
24 ZKSCAN1 11 160.0 Weakly correlated
25 ZNF182 11 99.0 Weakly correlated
26 ZNF471 11 94.0 Weakly correlated
27 ZNF486 11 8.6 Weakly correlated
28 ZNF610 11 28.9 Weakly correlated
29 ZNF705D 11 28.9 Weakly correlated
30 ZNF250 9 99.0 Weakly correlated
31 ZNF274 9 99.0 Weakly correlated
32 ZNF479 8 6.4 Weakly correlated
33 ZNF558 8 99.0 Weakly correlated
34 ZNF589 8 28.9 Weakly correlated
35 ZKSCAN8 7 160.0 Weakly correlated
36 ZNF101 7 43.0 Weakly correlated
37 ZFP69B 6 99.0 Weakly correlated
38 ZNF133 6 99.0 Weakly correlated
39 ZNF140 6 99.0 Weakly correlated
40 ZNF175 6 94.0 Weakly correlated
41 ZNF320 6 28.9 Weakly correlated
42 ZNF534 6 19.6 Weakly correlated
43 ZNF554 6 99.0 Weakly correlated
44 ZNF583 6 99.0 Weakly correlated
45 ZNF197 5 99.0 Weakly correlated
46 ZNF506 5 28.9 Weakly correlated
47 ZNF528 5 43.0 Weakly correlated
48 ZNF584 5 99.0 Weakly correlated
49 ZNF671 5 94.0 Weakly correlated
50 ZNF786 5 99.0 Weakly correlated
51 ZNF879 5 99.0 Weakly correlated
52 ZNF18 4 160.0 Weakly correlated
53 ZNF211 4 94.0 Weakly correlated
54 ZNF701 4 28.9 Weakly correlated
55 ZNF816 4 28.9 Weakly correlated
56 ZFP57 3 87.0 Highly correlated
57 ZNF17 3 69.0 Weakly correlated
58 ZNF257 3 0.0 Weakly correlated
59 ZNF28 3 28.9 Weakly correlated
60 ZNF337 3 43.0 Weakly correlated
61 ZNF350 3 99.0 Weakly correlated
62 ZNF468 3 28.9 Weakly correlated
63 ZNF707 3 74.0 Moderately correlated
64 ZFP28 2 99.0 Weakly correlated
65 ZNF124 2 43.0 Weakly correlated
66 ZNF132 2 94.0 Weakly correlated
67 ZNF135 2 94.0 Weakly correlated
68 ZNF202 2 160.0 Weakly correlated
69 ZNF264 2 99.0 Weakly correlated
70 ZNF273 2 28.9 Weakly correlated
71 ZNF284 2 43.0 Weakly correlated
72 ZNF331 2 94.0 Weakly correlated
73 ZNF429 2 28.9 Weakly correlated
74 ZNF519 2 19.6 Weakly correlated
75 ZNF563 2 28.9 Weakly correlated
76 ZNF585B 2 99.0 Weakly correlated
77 ZNF675 2 8.6 Weakly correlated
78 ZNF695 2 28.9 Weakly correlated
79 ZNF81 2 99.0 Weakly correlated
80 ZFP69 1 99.0 Weakly correlated
81 ZFP90 1 99.0 Weakly correlated
82 ZNF100 1 28.9 Weakly correlated
83 ZNF169 1 94.0 Weakly correlated
84 ZNF224 1 69.0 Weakly correlated
85 ZNF225 1 74.0 Moderately correlated
86 ZNF230 1 28.9 Weakly correlated
87 ZNF26 1 99.0 Weakly correlated
88 ZNF287 1 99.0 Weakly correlated
89 ZNF354A 1 99.0 Weakly correlated
90 ZNF41 1 99.0 Weakly correlated
91 ZNF425 1 94.0 Weakly correlated
92 ZNF441 1 43.0 Weakly correlated
93 ZNF445 1 99.0 Weakly correlated
94 ZNF480 1 43.0 Weakly correlated
95 ZNF485 1 94.0 Weakly correlated
96 ZNF530 1 28.9 Weakly correlated
97 ZNF549 1 87.0 Highly correlated
98 ZNF586 1 43.0 Weakly correlated
99 ZNF613 1 99.0 Weakly correlated
100 ZNF641 1 99.0 Weakly correlated
101 ZNF677 1 99.0 Weakly correlated
102 ZNF681 1 28.9 Weakly correlated
103 ZNF682 1 28.9 Weakly correlated
104 ZNF689 1 99.0 Weakly correlated
105 ZNF735 1 28.9 Weakly correlated
106 ZNF736 1 43.0 Weakly correlated
107 ZNF765 1 8.6 Weakly correlated
108 ZNF777 1 319.0 Weakly correlated
109 ZNF778 1 74.0 Moderately correlated
110 ZNF780A 1 43.0 Weakly correlated
111 ZNF808 1 19.6 Weakly correlated
112 ZNF823 1 43.0 Weakly correlated
113 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 113 94.0 Weakly correlated
2 ZNF382 56 99.0 Weakly correlated
3 ZNF490 37 43.0 Weakly correlated
4 ZIM3 36 87.0 Highly correlated
5 ZNF136 32 74.0 Moderately correlated
6 ZNF160 31 74.0 Moderately correlated
7 ZNF248 26 99.0 Weakly correlated
8 ZNF84 22 99.0 Weakly correlated
9 ZNF92 19 28.9 Weakly correlated
10 ZNF723 19 15.2 Weakly correlated
11 ZNF793 17 99.0 Weakly correlated
12 ZNF680 13 28.9 Weakly correlated
13 ZNF324 11 99.0 Weakly correlated
14 ZNF8 11 99.0 Weakly correlated
15 ZNF486 9 8.6 Weakly correlated
16 ZNF250 9 99.0 Weakly correlated
17 ZNF471 9 94.0 Weakly correlated
18 ZNF317 8 99.0 Weakly correlated
19 ZNF705D 7 28.9 Weakly correlated
20 ZNF705B 6 28.9 Weakly correlated
21 ZNF75D 6 94.0 Weakly correlated
22 ZNF101 5 43.0 Weakly correlated
23 ZNF140 5 99.0 Weakly correlated
24 ZNF479 4 6.4 Weakly correlated
25 ZNF133 3 99.0 Weakly correlated
26 ZNF679 3 28.9 Weakly correlated
27 ZNF534 3 19.6 Weakly correlated
28 ZNF879 3 99.0 Weakly correlated
29 ZNF786 3 99.0 Weakly correlated
30 ZNF558 3 99.0 Weakly correlated
31 ZNF707 2 74.0 Moderately correlated
32 ZFP28 2 99.0 Weakly correlated
33 ZNF766 2 43.0 Weakly correlated
34 ZNF671 2 94.0 Weakly correlated
35 ZNF17 2 69.0 Weakly correlated
36 ZNF81 2 99.0 Weakly correlated
37 ZNF132 2 94.0 Weakly correlated
38 ZNF816 2 28.9 Weakly correlated
39 ZNF563 1 28.9 Weakly correlated
40 ZNF585B 1 99.0 Weakly correlated
41 ZNF589 1 28.9 Weakly correlated
42 ZNF468 1 28.9 Weakly correlated
43 ZNF225 1 74.0 Moderately correlated
44 ZNF485 1 94.0 Weakly correlated
45 ZNF584 1 99.0 Weakly correlated
46 ZNF350 1 99.0 Weakly correlated
47 ZNF28 1 28.9 Weakly correlated
48 ZNF320 1 28.9 Weakly correlated
49 ZNF677 1 99.0 Weakly correlated
50 ZNF586 1 43.0 Weakly correlated
51 ZFP37 1 99.0 Weakly correlated
52 ZFP57 1 87.0 Highly correlated
53 ZFP69 1 99.0 Weakly correlated
54 ZFP90 1 99.0 Weakly correlated
55 ZKSCAN1 1 160.0 Weakly correlated
56 ZNF169 1 94.0 Weakly correlated
57 ZNF197 1 99.0 Weakly correlated
58 ZNF263 1 180.0 Weakly correlated
59 ZNF264 1 99.0 Weakly correlated
60 ZNF287 1 99.0 Weakly correlated
61 ZNF2 1 99.0 Weakly correlated
62 ZNF202 1 160.0 Weakly correlated
63 ZNF506 1 28.9 Weakly correlated
64 ZNF585A 1 99.0 Weakly correlated
65 ZNF675 1 8.6 Weakly correlated
66 ZNF735 1 28.9 Weakly correlated
67 ZNF354A 1 99.0 Weakly correlated
68 ZNF528 1 43.0 Weakly correlated
69 ZNF641 1 99.0 Weakly correlated
70 ZNF175 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF248 99.0 Weakly correlated
2 ZNF251 94.0 Weakly correlated
3 ZNF317 99.0 Weakly correlated
4 ZNF471 94.0 Weakly correlated
5 ZNF486 8.6 Weakly correlated
6 ZNF680 28.9 Weakly correlated
7 ZNF705B 28.9 Weakly correlated
8 ZNF723 15.2 Weakly correlated
9 ZNF75D 94.0 Weakly correlated
10 ZNF793 99.0 Weakly correlated
11 ZNF84 99.0 Weakly correlated
12 ZNF8 99.0 Weakly correlated
13 ZNF92 28.9 Weakly correlated