ZRdb KZFP & Repeats
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LINE_L1MA4_3END

  • Name
    L1MA4_3END
  • Repbase
    L1MA4
  • Type
    LINE
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000259
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaataaccagaatatataaggaactcaaacaactcaatagcaaaaaaacaaataatccgattnaaaaatgggcaaaagatctgaatagacatttctcaaaagaagacatacaaatggccaacaggtatatgaaaaaatgctcaacatcactaatcatcagggaaatgcaaatcaaaaccacaatgagatatcatctcaccccagttaaaatggctnttatcaaaaagacagaaaataacagatgctggcgaggatgcggagaaaggggaacnctcgtacactgttggtgggaatgtaaattagtacagccactatggaaaacagtatggaggttcctcaaaaaactaaaaatagaactaccatatgatccagcaatcccactgctgggtatatatccaaaagaaaggaaatcagtatatcgaagagatatctgcactcccatgtttattgcagcactattcacaatagccaagatatggaatcaacctaagtgtccatcaacggatgaatggataaagaaaatgtggtatatatacacaatggaatattattcagccataaaaaagaatgaaatcctgtcatttgcagcaacatggatggaactggaggncattatgttaagtgaaataagccaggcacagaaagacaaatatcgcatgttctcactcatatgtgggagctaaaaaagtngatctcatggaggtagagagtagaatggtggttaccagaggctgggaagggtagggggagggggggaatgaagagaggttggttaatgggtacaaaaatacagttagatagaaggaataagntctagtgttcgatagcacagtagggtgactatagttaacaataatttattgtatatttcaaaatagctagaagagaaganttggaatgttcccaacacaaagaaatgataaatgtttgaggtgatggatatcccaattaccctgatttgatcattacacattgtatgcatgtatcaaaatatcacatgtaccccanaaatatgtacaactattatgtatcaataaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 696 99.0 Weakly correlated
2 ZNF251 599 94.0 Weakly correlated
3 ZNF136 176 74.0 Moderately correlated
4 ZNF160 174 74.0 Moderately correlated
5 ZIM3 163 87.0 Highly correlated
6 ZNF723 134 15.2 Weakly correlated
7 ZNF490 117 43.0 Weakly correlated
8 ZNF317 107 99.0 Weakly correlated
9 ZNF248 96 99.0 Weakly correlated
10 ZNF680 85 28.9 Weakly correlated
11 ZNF394 83 99.0 Weakly correlated
12 ZNF92 78 28.9 Weakly correlated
13 ZNF263 70 180.0 Weakly correlated
14 ZNF679 68 28.9 Weakly correlated
15 ZNF766 67 43.0 Weakly correlated
16 ZNF2 63 99.0 Weakly correlated
17 ZNF8 62 99.0 Weakly correlated
18 ZNF486 52 8.6 Weakly correlated
19 ZNF84 52 99.0 Weakly correlated
20 ZNF705B 49 28.9 Weakly correlated
21 ZNF471 45 94.0 Weakly correlated
22 ZFP37 44 99.0 Weakly correlated
23 ZNF324 40 99.0 Weakly correlated
24 ZNF558 40 99.0 Weakly correlated
25 ZKSCAN1 37 160.0 Weakly correlated
26 ZNF705D 37 28.9 Weakly correlated
27 ZNF101 35 43.0 Weakly correlated
28 ZNF585A 31 99.0 Weakly correlated
29 ZNF133 29 99.0 Weakly correlated
30 ZNF18 27 160.0 Weakly correlated
31 ZNF250 25 99.0 Weakly correlated
32 ZNF425 24 94.0 Weakly correlated
33 ZNF182 22 99.0 Weakly correlated
34 ZNF479 22 6.4 Weakly correlated
35 ZNF793 22 99.0 Weakly correlated
36 ZFP69B 21 99.0 Weakly correlated
37 ZNF140 21 99.0 Weakly correlated
38 ZNF175 21 94.0 Weakly correlated
39 ZNF534 21 19.6 Weakly correlated
40 ZNF665 21 28.9 Weakly correlated
41 ZNF583 20 99.0 Weakly correlated
42 ZNF677 20 99.0 Weakly correlated
43 ZNF225 19 74.0 Moderately correlated
44 ZNF75D 18 94.0 Weakly correlated
45 ZNF610 17 28.9 Weakly correlated
46 ZFP57 16 87.0 Highly correlated
47 ZNF257 16 0.0 Weakly correlated
48 ZNF320 16 28.9 Weakly correlated
49 ZNF554 16 99.0 Weakly correlated
50 ZNF589 16 28.9 Weakly correlated
51 ZNF528 15 43.0 Weakly correlated
52 ZNF786 15 99.0 Weakly correlated
53 ZNF879 15 99.0 Weakly correlated
54 ZNF230 14 28.9 Weakly correlated
55 ZFP28 13 99.0 Weakly correlated
56 ZNF197 12 99.0 Weakly correlated
57 ZNF274 12 99.0 Weakly correlated
58 ZNF202 11 160.0 Weakly correlated
59 ZNF506 11 28.9 Weakly correlated
60 ZNF707 11 74.0 Moderately correlated
61 ZNF429 10 28.9 Weakly correlated
62 ZNF485 10 94.0 Weakly correlated
63 ZNF547 10 74.0 Moderately correlated
64 ZNF701 10 28.9 Weakly correlated
65 ZNF792 10 94.0 Weakly correlated
66 ZNF354A 9 99.0 Weakly correlated
67 ZNF585B 9 99.0 Weakly correlated
68 ZNF287 8 99.0 Weakly correlated
69 ZNF584 8 99.0 Weakly correlated
70 ZNF597 8 94.0 Weakly correlated
71 ZNF641 8 99.0 Weakly correlated
72 ZKSCAN8 7 160.0 Weakly correlated
73 ZNF17 7 69.0 Weakly correlated
74 ZNF222 7 43.0 Weakly correlated
75 ZNF337 7 43.0 Weakly correlated
76 ZNF441 7 43.0 Weakly correlated
77 ZNF264 6 99.0 Weakly correlated
78 ZNF549 6 87.0 Highly correlated
79 ZNF135 5 94.0 Weakly correlated
80 ZNF284 5 43.0 Weakly correlated
81 ZNF674 5 99.0 Weakly correlated
82 ZNF695 5 28.9 Weakly correlated
83 ZNF224 4 69.0 Weakly correlated
84 ZNF28 4 28.9 Weakly correlated
85 ZNF41 4 99.0 Weakly correlated
86 ZNF483 4 99.0 Weakly correlated
87 ZNF519 4 19.6 Weakly correlated
88 ZNF563 4 28.9 Weakly correlated
89 ZNF765 4 8.6 Weakly correlated
90 ZNF81 4 99.0 Weakly correlated
91 ZNF114 3 28.9 Weakly correlated
92 ZNF33A 3 99.0 Weakly correlated
93 ZNF347 3 43.0 Weakly correlated
94 ZNF440 3 28.9 Weakly correlated
95 ZNF454 3 99.0 Weakly correlated
96 ZNF510 3 99.0 Weakly correlated
97 ZNF778 3 74.0 Moderately correlated
98 ZNF823 3 43.0 Weakly correlated
99 ZFP69 2 99.0 Weakly correlated
100 ZKSCAN5 2 160.0 Weakly correlated
101 ZNF141 2 43.0 Weakly correlated
102 ZNF169 2 94.0 Weakly correlated
103 ZNF273 2 28.9 Weakly correlated
104 ZNF334 2 99.0 Weakly correlated
105 ZNF480 2 43.0 Weakly correlated
106 ZNF567 2 99.0 Weakly correlated
107 ZNF586 2 43.0 Weakly correlated
108 ZNF669 2 43.0 Weakly correlated
109 ZNF671 2 94.0 Weakly correlated
110 ZNF682 2 28.9 Weakly correlated
111 ZNF808 2 19.6 Weakly correlated
112 ZNF93 2 8.6 Weakly correlated
113 PRDM9 1 0.0 Weakly correlated
114 ZFP90 1 99.0 Weakly correlated
115 ZNF12 1 99.0 Weakly correlated
116 ZNF177 1 94.0 Weakly correlated
117 ZNF189 1 99.0 Weakly correlated
118 ZNF223 1 43.0 Weakly correlated
119 ZNF253 1 19.6 Weakly correlated
120 ZNF26 1 99.0 Weakly correlated
121 ZNF30 1 94.0 Weakly correlated
122 ZNF333 1 99.0 Weakly correlated
123 ZNF354B 1 99.0 Weakly correlated
124 ZNF354C 1 99.0 Weakly correlated
125 ZNF418 1 43.0 Weakly correlated
126 ZNF420 1 94.0 Weakly correlated
127 ZNF433 1 43.0 Weakly correlated
128 ZNF445 1 99.0 Weakly correlated
129 ZNF44 1 43.0 Weakly correlated
130 ZNF468 1 28.9 Weakly correlated
131 ZNF557 1 15.2 Weakly correlated
132 ZNF559 1 74.0 Moderately correlated
133 ZNF607 1 43.0 Weakly correlated
134 ZNF675 1 8.6 Weakly correlated
135 ZNF681 1 28.9 Weakly correlated
136 ZNF700 1 28.9 Weakly correlated
137 ZNF730 1 19.6 Weakly correlated
138 ZNF735 1 28.9 Weakly correlated
139 ZNF75A 1 94.0 Weakly correlated
140 ZNF780A 1 43.0 Weakly correlated
141 ZNF780B 1 74.0 Moderately correlated
142 ZNF7 1 99.0 Weakly correlated
143 ZNF816 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 555 94.0 Weakly correlated
2 ZNF160 164 74.0 Moderately correlated
3 ZNF136 140 74.0 Moderately correlated
4 ZNF382 131 99.0 Weakly correlated
5 ZNF490 107 43.0 Weakly correlated
6 ZNF723 100 15.2 Weakly correlated
7 ZIM3 99 87.0 Highly correlated
8 ZNF248 86 99.0 Weakly correlated
9 ZNF8 49 99.0 Weakly correlated
10 ZNF84 46 99.0 Weakly correlated
11 ZNF471 43 94.0 Weakly correlated
12 ZNF680 29 28.9 Weakly correlated
13 ZNF585A 29 99.0 Weakly correlated
14 ZNF486 29 8.6 Weakly correlated
15 ZNF92 26 28.9 Weakly correlated
16 ZNF250 25 99.0 Weakly correlated
17 ZNF317 25 99.0 Weakly correlated
18 ZNF101 22 43.0 Weakly correlated
19 ZNF133 19 99.0 Weakly correlated
20 ZNF677 17 99.0 Weakly correlated
21 ZNF2 15 99.0 Weakly correlated
22 ZNF558 15 99.0 Weakly correlated
23 ZNF793 13 99.0 Weakly correlated
24 ZNF225 13 74.0 Moderately correlated
25 ZNF879 12 99.0 Weakly correlated
26 ZNF324 11 99.0 Weakly correlated
27 ZNF766 11 43.0 Weakly correlated
28 ZNF705B 11 28.9 Weakly correlated
29 ZNF534 10 19.6 Weakly correlated
30 ZNF140 10 99.0 Weakly correlated
31 ZNF705D 9 28.9 Weakly correlated
32 ZNF425 8 94.0 Weakly correlated
33 ZFP57 8 87.0 Highly correlated
34 ZNF786 8 99.0 Weakly correlated
35 ZNF75D 7 94.0 Weakly correlated
36 ZNF354A 7 99.0 Weakly correlated
37 ZNF707 6 74.0 Moderately correlated
38 ZNF792 6 94.0 Weakly correlated
39 ZNF597 6 94.0 Weakly correlated
40 ZNF287 6 99.0 Weakly correlated
41 ZNF679 6 28.9 Weakly correlated
42 ZNF263 6 180.0 Weakly correlated
43 ZNF337 5 43.0 Weakly correlated
44 ZNF485 5 94.0 Weakly correlated
45 ZNF479 5 6.4 Weakly correlated
46 ZNF257 5 0.0 Weakly correlated
47 ZNF674 4 99.0 Weakly correlated
48 ZNF264 4 99.0 Weakly correlated
49 ZNF81 4 99.0 Weakly correlated
50 ZNF506 3 28.9 Weakly correlated
51 ZNF202 3 160.0 Weakly correlated
52 ZNF583 3 99.0 Weakly correlated
53 ZNF394 3 99.0 Weakly correlated
54 ZFP28 3 99.0 Weakly correlated
55 ZNF701 3 28.9 Weakly correlated
56 ZNF641 3 99.0 Weakly correlated
57 ZNF695 3 28.9 Weakly correlated
58 ZNF18 3 160.0 Weakly correlated
59 ZNF528 2 43.0 Weakly correlated
60 ZNF671 2 94.0 Weakly correlated
61 ZNF585B 2 99.0 Weakly correlated
62 ZFP69 2 99.0 Weakly correlated
63 ZKSCAN1 2 160.0 Weakly correlated
64 ZNF141 2 43.0 Weakly correlated
65 ZNF554 2 99.0 Weakly correlated
66 ZNF665 2 28.9 Weakly correlated
67 ZNF28 2 28.9 Weakly correlated
68 ZNF589 2 28.9 Weakly correlated
69 ZNF197 2 99.0 Weakly correlated
70 ZNF17 2 69.0 Weakly correlated
71 ZNF429 2 28.9 Weakly correlated
72 ZNF347 2 43.0 Weakly correlated
73 ZNF284 2 43.0 Weakly correlated
74 ZNF700 1 28.9 Weakly correlated
75 ZNF563 1 28.9 Weakly correlated
76 ZNF823 1 43.0 Weakly correlated
77 ZNF433 1 43.0 Weakly correlated
78 ZNF567 1 99.0 Weakly correlated
79 ZNF273 1 28.9 Weakly correlated
80 ZFP90 1 99.0 Weakly correlated
81 ZKSCAN5 1 160.0 Weakly correlated
82 ZNF441 1 43.0 Weakly correlated
83 ZNF584 1 99.0 Weakly correlated
84 ZKSCAN8 1 160.0 Weakly correlated
85 ZNF33A 1 99.0 Weakly correlated
86 ZNF483 1 99.0 Weakly correlated
87 ZNF175 1 94.0 Weakly correlated
88 ZNF480 1 43.0 Weakly correlated
89 ZNF778 1 74.0 Moderately correlated
90 ZNF735 1 28.9 Weakly correlated
91 ZNF440 1 28.9 Weakly correlated
92 ZNF669 1 43.0 Weakly correlated
93 ZNF468 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Highly correlated
2 ZNF248 99.0 Weakly correlated
3 ZNF251 94.0 Weakly correlated
4 ZNF263 180.0 Weakly correlated
5 ZNF2 99.0 Weakly correlated
6 ZNF471 94.0 Weakly correlated
7 ZNF486 8.6 Weakly correlated
8 ZNF597 94.0 Weakly correlated
9 ZNF680 28.9 Weakly correlated
10 ZNF705B 28.9 Weakly correlated
11 ZNF723 15.2 Weakly correlated
12 ZNF75D 94.0 Weakly correlated
13 ZNF792 94.0 Weakly correlated
14 ZNF793 99.0 Weakly correlated
15 ZNF84 99.0 Weakly correlated
16 ZNF8 99.0 Weakly correlated
17 ZNF92 28.9 Weakly correlated