ZRdb KZFP & Repeats
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LINE_L1MA4A_3END

  • Name
    L1MA4A_3END
  • Repbase
    L1MA4A
  • Type
    LINE
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000260
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagaatatacaaggaactcaaacaactcaacagcaaaaaaacaaataatcccattaaaaagtgggcaaaggacatgaatagacatttctcaaaagaagacatacaaatggccaacaggtatatgaaaaaatgctcaacatcactaatcatcagggaaatgcaaatcaaaaccacaatgagatatcatcttaccccagttagaatggctattattaaaaagacaaaaaataacagatgctggcgaggatgcggagaaaagggaactcttatacactgttggtgggaatgtaaattagtacagccactatggaaaacagtatggagatttctcaaaaaactaaaaatagaactaccatacgatccagcaatcccactactgggtatttatccaaaggaaaagaaatcagtatatcaaagggatacctgcactcccatgtttattgcagcactattcacaatagcaaagatatggaatcaacctaagtgtccatcaacggatgaatggataaagaaaatgtggtatatatacacaatggaatactattcggccataaaaaagaatgaaatcatgtcatttgcagcaacatggatggaactggaggtcattatgttaagtgaaataagccaggcacagaaagacaaatatcgcatgttctcactcatatgtgggagctaaaaaagttgatctcatggaggtagagagtagaatgatagataccagaggctgggaagggtgtgtgggtgggaggggggatgaagagaggttggttaatgggtacaaacatacagttagatagaaggaataagttctaatgttcgatagcagagtagggtgactatagttaacaacaatgtattgtatatttcaaaatagctagaagagaggacttgaaatgttcccaacacatagaaatgataaatactcgaggtgatggataccctaaataccctgacttgatcattacacattctatgcatgtaacaaaatatcacatgtaccccataaatatgtacaaatattatgtatcaataaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 655 99.0 Weakly correlated
2 ZNF251 256 94.0 Weakly correlated
3 ZNF160 238 74.0 Moderately correlated
4 ZNF490 153 43.0 Weakly correlated
5 ZNF136 149 74.0 Moderately correlated
6 ZIM3 116 87.0 Highly correlated
7 ZNF317 96 99.0 Weakly correlated
8 ZNF248 82 99.0 Weakly correlated
9 ZNF766 70 43.0 Weakly correlated
10 ZNF92 70 28.9 Weakly correlated
11 ZNF680 69 28.9 Weakly correlated
12 ZNF274 62 99.0 Weakly correlated
13 ZNF723 60 15.2 Weakly correlated
14 ZNF263 58 180.0 Weakly correlated
15 ZNF679 55 28.9 Weakly correlated
16 ZNF394 36 99.0 Weakly correlated
17 ZNF793 31 99.0 Weakly correlated
18 ZNF705B 26 28.9 Weakly correlated
19 ZNF2 25 99.0 Weakly correlated
20 ZNF479 25 6.4 Weakly correlated
21 ZNF705D 25 28.9 Weakly correlated
22 ZFP37 24 99.0 Weakly correlated
23 ZNF8 24 99.0 Weakly correlated
24 ZNF337 23 43.0 Weakly correlated
25 ZNF471 23 94.0 Weakly correlated
26 ZNF589 22 28.9 Weakly correlated
27 ZNF486 21 8.6 Weakly correlated
28 ZNF534 21 19.6 Weakly correlated
29 ZNF558 21 99.0 Weakly correlated
30 ZNF483 20 99.0 Weakly correlated
31 ZNF583 19 99.0 Weakly correlated
32 ZNF101 18 43.0 Weakly correlated
33 ZNF84 18 99.0 Weakly correlated
34 ZNF429 17 28.9 Weakly correlated
35 ZNF324 16 99.0 Weakly correlated
36 ZNF554 16 99.0 Weakly correlated
37 ZNF133 15 99.0 Weakly correlated
38 ZNF175 14 94.0 Weakly correlated
39 ZNF197 13 99.0 Weakly correlated
40 ZNF879 13 99.0 Weakly correlated
41 ZNF182 12 99.0 Weakly correlated
42 ZNF485 12 94.0 Weakly correlated
43 ZNF506 12 28.9 Weakly correlated
44 ZNF584 11 99.0 Weakly correlated
45 ZNF140 10 99.0 Weakly correlated
46 ZNF250 10 99.0 Weakly correlated
47 ZNF701 10 28.9 Weakly correlated
48 ZNF81 10 99.0 Weakly correlated
49 ZFP57 9 87.0 Highly correlated
50 ZFP69B 9 99.0 Weakly correlated
51 ZKSCAN1 9 160.0 Weakly correlated
52 ZNF610 9 28.9 Weakly correlated
53 ZNF735 9 28.9 Weakly correlated
54 ZNF18 8 160.0 Weakly correlated
55 ZNF257 8 0.0 Weakly correlated
56 ZNF585A 8 99.0 Weakly correlated
57 ZKSCAN8 7 160.0 Weakly correlated
58 ZNF114 7 28.9 Weakly correlated
59 ZNF320 7 28.9 Weakly correlated
60 ZNF264 6 99.0 Weakly correlated
61 ZNF28 6 28.9 Weakly correlated
62 ZNF519 6 19.6 Weakly correlated
63 ZNF528 6 43.0 Weakly correlated
64 ZNF585B 6 99.0 Weakly correlated
65 ZNF597 6 94.0 Weakly correlated
66 ZNF287 5 99.0 Weakly correlated
67 ZNF440 5 28.9 Weakly correlated
68 ZNF547 5 74.0 Moderately correlated
69 ZNF677 5 99.0 Weakly correlated
70 ZNF75D 5 94.0 Weakly correlated
71 ZNF786 5 99.0 Weakly correlated
72 ZNF878 5 43.0 Weakly correlated
73 ZFP28 4 99.0 Weakly correlated
74 ZFP69 4 99.0 Weakly correlated
75 ZNF17 4 69.0 Weakly correlated
76 ZNF33A 4 99.0 Weakly correlated
77 ZNF41 4 99.0 Weakly correlated
78 ZNF441 4 43.0 Weakly correlated
79 ZNF549 4 87.0 Highly correlated
80 ZNF845 4 28.9 Weakly correlated
81 ZNF135 3 94.0 Weakly correlated
82 ZNF253 3 19.6 Weakly correlated
83 ZNF26 3 99.0 Weakly correlated
84 ZNF284 3 43.0 Weakly correlated
85 ZNF425 3 94.0 Weakly correlated
86 ZNF43 3 43.0 Weakly correlated
87 ZNF468 3 28.9 Weakly correlated
88 ZNF563 3 28.9 Weakly correlated
89 ZNF682 3 28.9 Weakly correlated
90 ZNF707 3 74.0 Moderately correlated
91 ZNF91 3 6.0 Weakly correlated
92 ZFP82 2 99.0 Weakly correlated
93 ZNF124 2 43.0 Weakly correlated
94 ZNF157 2 99.0 Weakly correlated
95 ZNF202 2 160.0 Weakly correlated
96 ZNF230 2 28.9 Weakly correlated
97 ZNF334 2 99.0 Weakly correlated
98 ZNF641 2 99.0 Weakly correlated
99 ZNF674 2 99.0 Weakly correlated
100 ZNF695 2 28.9 Weakly correlated
101 ZNF730 2 19.6 Weakly correlated
102 ZNF780A 2 43.0 Weakly correlated
103 ZNF808 2 19.6 Weakly correlated
104 ZNF823 2 43.0 Weakly correlated
105 ZNF12 1 99.0 Weakly correlated
106 ZNF205 1 180.0 Weakly correlated
107 ZNF211 1 94.0 Weakly correlated
108 ZNF224 1 69.0 Weakly correlated
109 ZNF225 1 74.0 Moderately correlated
110 ZNF254 1 43.0 Weakly correlated
111 ZNF350 1 99.0 Weakly correlated
112 ZNF354A 1 99.0 Weakly correlated
113 ZNF445 1 99.0 Weakly correlated
114 ZNF44 1 43.0 Weakly correlated
115 ZNF530 1 28.9 Weakly correlated
116 ZNF559 1 74.0 Moderately correlated
117 ZNF560 1 43.0 Weakly correlated
118 ZNF561 1 43.0 Weakly correlated
119 ZNF564 1 74.0 Moderately correlated
120 ZNF567 1 99.0 Weakly correlated
121 ZNF568 1 99.0 Weakly correlated
122 ZNF570 1 99.0 Weakly correlated
123 ZNF573 1 94.0 Weakly correlated
124 ZNF611 1 19.6 Weakly correlated
125 ZNF616 1 43.0 Weakly correlated
126 ZNF624 1 99.0 Weakly correlated
127 ZNF649 1 28.9 Weakly correlated
128 ZNF671 1 94.0 Weakly correlated
129 ZNF716 1 19.6 Weakly correlated
130 ZNF727 1 19.6 Weakly correlated
131 ZNF765 1 8.6 Weakly correlated
132 ZNF777 1 319.0 Weakly correlated
133 ZNF778 1 74.0 Moderately correlated
134 ZNF789 1 99.0 Weakly correlated
135 ZNF850 1 28.9 Weakly correlated
136 ZNF85 1 28.9 Weakly correlated
137 ZNF90 1 8.6 Weakly correlated
138 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 228 94.0 Weakly correlated
2 ZNF160 220 74.0 Moderately correlated
3 ZNF382 144 99.0 Weakly correlated
4 ZNF490 143 43.0 Weakly correlated
5 ZNF136 118 74.0 Moderately correlated
6 ZNF248 76 99.0 Weakly correlated
7 ZIM3 72 87.0 Highly correlated
8 ZNF723 37 15.2 Weakly correlated
9 ZNF680 32 28.9 Weakly correlated
10 ZNF317 30 99.0 Weakly correlated
11 ZNF8 21 99.0 Weakly correlated
12 ZNF337 21 43.0 Weakly correlated
13 ZNF84 18 99.0 Weakly correlated
14 ZNF793 15 99.0 Weakly correlated
15 ZNF534 15 19.6 Weakly correlated
16 ZNF471 14 94.0 Weakly correlated
17 ZNF429 13 28.9 Weakly correlated
18 ZNF263 11 180.0 Weakly correlated
19 ZNF250 11 99.0 Weakly correlated
20 ZNF92 11 28.9 Weakly correlated
21 ZNF486 11 8.6 Weakly correlated
22 ZNF324 10 99.0 Weakly correlated
23 ZNF879 9 99.0 Weakly correlated
24 ZNF81 9 99.0 Weakly correlated
25 ZNF101 9 43.0 Weakly correlated
26 ZNF558 9 99.0 Weakly correlated
27 ZNF479 9 6.4 Weakly correlated
28 ZNF705D 8 28.9 Weakly correlated
29 ZNF483 7 99.0 Weakly correlated
30 ZNF506 7 28.9 Weakly correlated
31 ZNF735 7 28.9 Weakly correlated
32 ZNF140 7 99.0 Weakly correlated
33 ZFP57 5 87.0 Highly correlated
34 ZNF287 5 99.0 Weakly correlated
35 ZNF705B 5 28.9 Weakly correlated
36 ZNF766 5 43.0 Weakly correlated
37 ZNF485 5 94.0 Weakly correlated
38 ZNF133 5 99.0 Weakly correlated
39 ZNF585A 5 99.0 Weakly correlated
40 ZNF679 4 28.9 Weakly correlated
41 ZNF677 4 99.0 Weakly correlated
42 ZNF257 4 0.0 Weakly correlated
43 ZNF701 3 28.9 Weakly correlated
44 ZNF707 3 74.0 Moderately correlated
45 ZNF468 3 28.9 Weakly correlated
46 ZNF786 3 99.0 Weakly correlated
47 ZFP69 3 99.0 Weakly correlated
48 ZNF33A 2 99.0 Weakly correlated
49 ZNF320 2 28.9 Weakly correlated
50 ZNF440 2 28.9 Weakly correlated
51 ZNF274 2 99.0 Weakly correlated
52 ZNF75D 2 94.0 Weakly correlated
53 ZFP82 2 99.0 Weakly correlated
54 ZNF2 2 99.0 Weakly correlated
55 ZFP37 2 99.0 Weakly correlated
56 ZNF394 2 99.0 Weakly correlated
57 ZNF264 2 99.0 Weakly correlated
58 ZNF585B 2 99.0 Weakly correlated
59 ZNF583 2 99.0 Weakly correlated
60 ZNF350 1 99.0 Weakly correlated
61 ZNF283 1 99.0 Weakly correlated
62 ZNF567 1 99.0 Weakly correlated
63 ZNF641 1 99.0 Weakly correlated
64 ZNF780A 1 43.0 Weakly correlated
65 ZFP28 1 99.0 Weakly correlated
66 ZNF765 1 8.6 Weakly correlated
67 ZNF425 1 94.0 Weakly correlated
68 ZNF528 1 43.0 Weakly correlated
69 ZNF649 1 28.9 Weakly correlated
70 ZNF674 1 99.0 Weakly correlated
71 ZNF789 1 99.0 Weakly correlated
72 ZNF878 1 43.0 Weakly correlated
73 ZNF26 1 99.0 Weakly correlated
74 ZNF519 1 19.6 Weakly correlated
75 ZNF530 1 28.9 Weakly correlated
76 ZNF549 1 87.0 Highly correlated
77 ZNF85 1 28.9 Weakly correlated
78 ZNF823 1 43.0 Weakly correlated
79 ZNF225 1 74.0 Moderately correlated
80 ZKSCAN1 1 160.0 Weakly correlated
81 ZNF597 1 94.0 Weakly correlated
82 ZNF695 1 28.9 Weakly correlated
83 ZNF157 1 99.0 Weakly correlated
84 ZNF560 1 43.0 Weakly correlated
85 ZNF28 1 28.9 Weakly correlated
86 ZNF44 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF250 99.0 Weakly correlated
2 ZNF251 94.0 Weakly correlated
3 ZNF471 94.0 Weakly correlated
4 ZNF486 8.6 Weakly correlated
5 ZNF558 99.0 Weakly correlated
6 ZNF680 28.9 Weakly correlated
7 ZNF723 15.2 Weakly correlated
8 ZNF84 99.0 Weakly correlated
9 ZNF8 99.0 Weakly correlated
10 ZNF92 28.9 Weakly correlated