ZRdb KZFP & Repeats
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LINE_L1MA3_3END

  • Name
    L1MA3_3END
  • Repbase
    L1MA3
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000258
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaataaccagaatatataaggagctcaaacaactctataggaaaaaatctaataatccgattnaaaaatgggcaaaagatctgaatagacatttctcaaaagaagacatacaaatggcaaacaggtatatgaaaaggtgctcaacatcattgatcatcagagaaatgcaaatcaaaactacaatgagatatcatctcaccccagttaaaatggcttttatccaaaagacaggcaataacaaatgctggcgaggatgtggagaaaagggaaccctcgtacactgttggtgggaatgtaaattagtacaaccactatggagaacagtttggaggttcctcaaaaaactaaaaatagagctaccatatgatccagcaatcccactgctaggtatatacccaaaagaaaggaaatcagtatatcgaagagatatctgcactcccatgtttattgcagcactattcacaatagccaagatttggaagcaacctaagtgtccatcaacagacgaatggataaagaaaatgtggtacatatacacaatggagtactattcagccataaaaaagaatgagatcctgtcatttgcaacaacatggatggaactggaggtcattatgttaagtgaaataagccaggcacagaaagacaaacttcgcatgttctcacttatttgtgggagctaaaaattaaaacaattgaactcatggagatagagagtagaatgatggttaccagaggctgggaagggtagtggggtgggggggaagtggggatggttaatgggtacaaaaatatagttaganagaatgaataagatctagtatttgatagcacaacagggtgactacagtcaacaataatttattgtacatttnaaaataactaaaagagtataattggattgtttgtaacacaaagaaangataaatgcttgaggtgatggataccccatttaccctgatgtgattattacgcattgtatgcctgtatcaaaatatctcatgtaccccataaatatatacacctactatgtacccacaaaaattaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 1225 99.0 Weakly correlated
2 ZNF251 582 94.0 Weakly correlated
3 ZNF490 274 43.0 Weakly correlated
4 ZNF248 230 99.0 Weakly correlated
5 ZIM3 165 87.0 Weakly correlated
6 ZNF680 161 28.9 Weakly correlated
7 ZNF723 157 15.2 Weakly correlated
8 ZNF317 153 99.0 Weakly correlated
9 ZNF793 134 99.0 Weakly correlated
10 ZNF160 125 74.0 Highly correlated
11 ZNF486 125 8.6 Weakly correlated
12 ZNF8 110 99.0 Weakly correlated
13 ZNF471 99 94.0 Weakly correlated
14 ZNF679 93 28.9 Weakly correlated
15 ZNF563 83 28.9 Weakly correlated
16 ZKSCAN1 82 160.0 Weakly correlated
17 ZNF425 77 94.0 Weakly correlated
18 ZNF394 73 99.0 Weakly correlated
19 ZNF705B 69 28.9 Weakly correlated
20 ZNF766 67 43.0 Weakly correlated
21 ZNF705D 58 28.9 Weakly correlated
22 ZNF84 58 99.0 Weakly correlated
23 ZNF92 57 28.9 Weakly correlated
24 ZNF263 53 180.0 Weakly correlated
25 ZNF324 47 99.0 Weakly correlated
26 ZNF879 44 99.0 Weakly correlated
27 ZNF534 43 19.6 Weakly correlated
28 ZNF250 42 99.0 Weakly correlated
29 ZNF133 39 99.0 Weakly correlated
30 ZFP37 31 99.0 Weakly correlated
31 ZNF2 30 99.0 Weakly correlated
32 ZNF558 26 99.0 Weakly correlated
33 ZNF101 24 43.0 Weakly correlated
34 ZNF136 24 74.0 Highly correlated
35 ZNF786 24 99.0 Weakly correlated
36 ZNF554 23 99.0 Weakly correlated
37 ZNF274 22 99.0 Weakly correlated
38 ZNF479 22 6.4 Weakly correlated
39 ZNF140 20 99.0 Weakly correlated
40 ZNF175 19 94.0 Weakly correlated
41 ZNF589 19 28.9 Weakly correlated
42 ZNF677 19 99.0 Weakly correlated
43 ZNF585A 15 99.0 Weakly correlated
44 ZNF701 15 28.9 Weakly correlated
45 ZNF18 14 160.0 Weakly correlated
46 ZNF257 14 0.0 Weakly correlated
47 ZFP57 13 87.0 Weakly correlated
48 ZNF182 13 99.0 Weakly correlated
49 ZNF287 13 99.0 Weakly correlated
50 ZNF441 12 43.0 Weakly correlated
51 ZNF528 12 43.0 Weakly correlated
52 ZNF202 11 160.0 Weakly correlated
53 ZNF334 11 99.0 Weakly correlated
54 ZNF506 11 28.9 Weakly correlated
55 ZNF584 11 99.0 Weakly correlated
56 ZNF610 11 28.9 Weakly correlated
57 ZNF197 10 99.0 Weakly correlated
58 ZNF354A 10 99.0 Weakly correlated
59 ZNF429 10 28.9 Weakly correlated
60 ZNF735 10 28.9 Weakly correlated
61 ZKSCAN8 9 160.0 Weakly correlated
62 ZNF33A 9 99.0 Weakly correlated
63 ZNF597 9 94.0 Weakly correlated
64 ZFP69B 8 99.0 Weakly correlated
65 ZNF169 8 94.0 Weakly correlated
66 ZNF28 8 28.9 Weakly correlated
67 ZNF320 8 28.9 Weakly correlated
68 ZNF81 8 99.0 Weakly correlated
69 ZNF41 7 99.0 Weakly correlated
70 ZNF695 7 28.9 Weakly correlated
71 ZNF707 7 74.0 Highly correlated
72 ZNF585B 6 99.0 Weakly correlated
73 ZNF30 5 94.0 Weakly correlated
74 ZNF440 5 28.9 Weakly correlated
75 ZNF485 5 94.0 Weakly correlated
76 ZNF880 5 28.9 Weakly correlated
77 ZFP69 4 99.0 Weakly correlated
78 ZNF519 4 19.6 Weakly correlated
79 ZNF549 4 87.0 Weakly correlated
80 ZNF641 4 99.0 Weakly correlated
81 ZNF716 4 19.6 Weakly correlated
82 ZNF75D 4 94.0 Weakly correlated
83 ZNF135 3 94.0 Weakly correlated
84 ZNF141 3 43.0 Weakly correlated
85 ZNF17 3 69.0 Moderately correlated
86 ZNF230 3 28.9 Weakly correlated
87 ZNF26 3 99.0 Weakly correlated
88 ZNF284 3 43.0 Weakly correlated
89 ZNF337 3 43.0 Weakly correlated
90 ZNF468 3 28.9 Weakly correlated
91 ZNF510 3 99.0 Weakly correlated
92 ZNF816 3 28.9 Weakly correlated
93 ZFP28 2 99.0 Weakly correlated
94 ZFP30 2 99.0 Weakly correlated
95 ZNF100 2 28.9 Weakly correlated
96 ZNF222 2 43.0 Weakly correlated
97 ZNF350 2 99.0 Weakly correlated
98 ZNF44 2 43.0 Weakly correlated
99 ZNF454 2 99.0 Weakly correlated
100 ZNF483 2 99.0 Weakly correlated
101 ZNF671 2 94.0 Weakly correlated
102 ZNF682 2 28.9 Weakly correlated
103 ZNF700 2 28.9 Weakly correlated
104 ZNF730 2 19.6 Weakly correlated
105 ZNF75A 2 94.0 Weakly correlated
106 ZNF765 2 8.6 Weakly correlated
107 ZNF780A 2 43.0 Weakly correlated
108 PRDM9 1 0.0 Weakly correlated
109 ZFP82 1 99.0 Weakly correlated
110 ZFP90 1 99.0 Weakly correlated
111 ZIK1 1 87.0 Weakly correlated
112 ZKSCAN5 1 160.0 Weakly correlated
113 ZNF124 1 43.0 Weakly correlated
114 ZNF211 1 94.0 Weakly correlated
115 ZNF224 1 69.0 Moderately correlated
116 ZNF264 1 99.0 Weakly correlated
117 ZNF273 1 28.9 Weakly correlated
118 ZNF282 1 319.0 Weakly correlated
119 ZNF347 1 43.0 Weakly correlated
120 ZNF34 1 99.0 Weakly correlated
121 ZNF417 1 28.9 Weakly correlated
122 ZNF430 1 19.6 Weakly correlated
123 ZNF43 1 43.0 Weakly correlated
124 ZNF445 1 99.0 Weakly correlated
125 ZNF480 1 43.0 Weakly correlated
126 ZNF556 1 94.0 Weakly correlated
127 ZNF562 1 28.9 Weakly correlated
128 ZNF567 1 99.0 Weakly correlated
129 ZNF573 1 94.0 Weakly correlated
130 ZNF583 1 99.0 Weakly correlated
131 ZNF587 1 28.9 Weakly correlated
132 ZNF605 1 99.0 Weakly correlated
133 ZNF611 1 19.6 Weakly correlated
134 ZNF616 1 43.0 Weakly correlated
135 ZNF626 1 0.0 Weakly correlated
136 ZNF674 1 99.0 Weakly correlated
137 ZNF684 1 99.0 Weakly correlated
138 ZNF792 1 94.0 Weakly correlated
139 ZNF799 1 43.0 Weakly correlated
140 ZNF7 1 99.0 Weakly correlated
141 ZNF813 1 28.9 Weakly correlated
142 ZNF823 1 43.0 Weakly correlated
143 ZNF845 1 28.9 Weakly correlated
144 ZNF85 1 28.9 Weakly correlated
145 ZNF878 1 43.0 Weakly correlated
146 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 547 94.0 Weakly correlated
2 ZNF490 256 43.0 Weakly correlated
3 ZNF382 248 99.0 Weakly correlated
4 ZNF248 217 99.0 Weakly correlated
5 ZNF723 136 15.2 Weakly correlated
6 ZNF160 121 74.0 Highly correlated
7 ZIM3 110 87.0 Weakly correlated
8 ZNF471 98 94.0 Weakly correlated
9 ZNF8 97 99.0 Weakly correlated
10 ZNF486 86 8.6 Weakly correlated
11 ZNF793 86 99.0 Weakly correlated
12 ZNF563 77 28.9 Weakly correlated
13 ZNF680 59 28.9 Weakly correlated
14 ZNF84 54 99.0 Weakly correlated
15 ZNF317 42 99.0 Weakly correlated
16 ZNF250 40 99.0 Weakly correlated
17 ZNF879 38 99.0 Weakly correlated
18 ZNF534 35 19.6 Weakly correlated
19 ZNF425 29 94.0 Weakly correlated
20 ZNF324 28 99.0 Weakly correlated
21 ZNF705B 26 28.9 Weakly correlated
22 ZKSCAN1 26 160.0 Weakly correlated
23 ZNF92 25 28.9 Weakly correlated
24 ZNF705D 22 28.9 Weakly correlated
25 ZNF677 18 99.0 Weakly correlated
26 ZNF133 18 99.0 Weakly correlated
27 ZNF786 18 99.0 Weakly correlated
28 ZNF101 16 43.0 Weakly correlated
29 ZNF136 16 74.0 Highly correlated
30 ZNF263 14 180.0 Weakly correlated
31 ZNF766 13 43.0 Weakly correlated
32 ZNF735 9 28.9 Weakly correlated
33 ZNF287 9 99.0 Weakly correlated
34 ZNF354A 9 99.0 Weakly correlated
35 ZNF701 8 28.9 Weakly correlated
36 ZNF81 8 99.0 Weakly correlated
37 ZNF585A 8 99.0 Weakly correlated
38 ZNF479 7 6.4 Weakly correlated
39 ZNF2 7 99.0 Weakly correlated
40 ZNF140 6 99.0 Weakly correlated
41 ZNF202 6 160.0 Weakly correlated
42 ZFP57 5 87.0 Weakly correlated
43 ZNF33A 5 99.0 Weakly correlated
44 ZNF558 5 99.0 Weakly correlated
45 ZNF429 5 28.9 Weakly correlated
46 ZNF528 4 43.0 Weakly correlated
47 ZNF880 4 28.9 Weakly correlated
48 ZNF169 4 94.0 Weakly correlated
49 ZNF679 4 28.9 Weakly correlated
50 ZNF28 4 28.9 Weakly correlated
51 ZNF320 4 28.9 Weakly correlated
52 ZNF554 4 99.0 Weakly correlated
53 ZNF597 4 94.0 Weakly correlated
54 ZNF485 3 94.0 Weakly correlated
55 ZNF337 3 43.0 Weakly correlated
56 ZNF440 3 28.9 Weakly correlated
57 ZFP69 3 99.0 Weakly correlated
58 ZNF44 2 43.0 Weakly correlated
59 ZNF716 2 19.6 Weakly correlated
60 ZKSCAN8 2 160.0 Weakly correlated
61 ZNF274 2 99.0 Weakly correlated
62 ZNF141 2 43.0 Weakly correlated
63 ZNF26 2 99.0 Weakly correlated
64 ZNF222 2 43.0 Weakly correlated
65 ZNF549 2 87.0 Weakly correlated
66 ZNF468 2 28.9 Weakly correlated
67 ZNF257 2 0.0 Weakly correlated
68 ZNF641 2 99.0 Weakly correlated
69 ZNF334 2 99.0 Weakly correlated
70 ZNF394 2 99.0 Weakly correlated
71 ZNF695 2 28.9 Weakly correlated
72 ZNF816 2 28.9 Weakly correlated
73 ZNF707 1 74.0 Highly correlated
74 ZNF417 1 28.9 Weakly correlated
75 ZNF506 1 28.9 Weakly correlated
76 PRDM9 1 0.0 Weakly correlated
77 ZNF18 1 160.0 Weakly correlated
78 ZNF282 1 319.0 Weakly correlated
79 ZNF34 1 99.0 Weakly correlated
80 ZNF480 1 43.0 Weakly correlated
81 ZNF780A 1 43.0 Weakly correlated
82 ZFP28 1 99.0 Weakly correlated
83 ZFP37 1 99.0 Weakly correlated
84 ZFP82 1 99.0 Weakly correlated
85 ZFP90 1 99.0 Weakly correlated
86 ZIK1 1 87.0 Weakly correlated
87 ZNF567 1 99.0 Weakly correlated
88 ZNF611 1 19.6 Weakly correlated
89 ZNF684 1 99.0 Weakly correlated
90 ZNF7 1 99.0 Weakly correlated
91 ZNF674 1 99.0 Weakly correlated
92 ZNF347 1 43.0 Weakly correlated
93 ZNF610 1 28.9 Weakly correlated
94 ZNF700 1 28.9 Weakly correlated
95 ZNF264 1 99.0 Weakly correlated
96 ZNF587 1 28.9 Weakly correlated
97 ZNF605 1 99.0 Weakly correlated
98 ZNF75D 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF133 99.0 Weakly correlated
2 ZNF136 74.0 Highly correlated
3 ZNF251 94.0 Weakly correlated
4 ZNF2 99.0 Weakly correlated
5 ZNF425 94.0 Weakly correlated
6 ZNF486 8.6 Weakly correlated
7 ZNF701 28.9 Weakly correlated
8 ZNF723 15.2 Weakly correlated
9 ZNF786 99.0 Weakly correlated
10 ZNF793 99.0 Weakly correlated
11 ZNF84 99.0 Weakly correlated
12 ZNF92 28.9 Weakly correlated