ZRdb KZFP & Repeats
...

LINE_L1MA2_3END

  • Name
    L1MA2_3END
  • Repbase
    L1MA2
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000257
Description :

ORF2 ends at bp 684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaataaccagaatatataaggagctcaaacaactctataggaaaaaatctaataatccgattaaaaaatgggcaaaagatttgaatagacatttctcaaaagaagacatacaaatggcaaacaggcatatgaaaaggtgctcaacatcattgatcatcagagaaatgcaaatcaaaactacaatgagatatcatctcaccccagttaaaatggcttntatccaaaagacaggcaataacaaatgctggcgaggatgtggagaaaagggaaccctcgtacactgttggtgggaatgtaaattagtacaaccactatggagaacagtttggaggttcctcaaaaaactaaaaatagagctaccatatgatccagcaatcccactgctgggtatatacccaaaagaaaggaaatcagtatatcgaagagatatctgcactcccatgtttgttgcagcactgttcacaatagccaagatttggaagcaacctaagtgtccatcaacagatgaatggataaagaaaatgtggtacatatacacaatggagtactattcagccataaaaaagaatgagatcctgtcatttgcaacaacatggatggaactggaggtcattatgttaagtgaaataagccaggcacagaaagacaaacatcgcatgttctcacttatttgtgggatctaaaaatcaaaacaattgaactcatggagatagagagtagaaggatggttaccagaggctgggaagggtagtggggggttggnggggaggtggggatggttaatgggtacaaaaaaatagttagaaagaatgaataagacctagtatttgatagcacaacagggtgactatagtcaataataatttaattgtacattttaaaataactaaaagagtataattggattgtttgtaacacaaaggataaatgcttgaggggatggataccccattttccatgatgtgattattacgcattgcatgcctgtatcaaaacatctcatgtaccccataaatatatacacctactatgtacccacaaaaattaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 738 99.0 Weakly correlated
2 ZNF251 465 94.0 Weakly correlated
3 ZNF490 300 43.0 Weakly correlated
4 ZNF248 179 99.0 Weakly correlated
5 ZIM3 116 87.0 Weakly correlated
6 ZNF317 114 99.0 Weakly correlated
7 ZNF793 113 99.0 Weakly correlated
8 ZNF471 111 94.0 Weakly correlated
9 ZNF486 110 8.6 Weakly correlated
10 ZNF723 105 15.2 Weakly correlated
11 ZNF680 102 28.9 Weakly correlated
12 ZNF8 81 99.0 Weakly correlated
13 ZNF160 80 74.0 Highly correlated
14 ZNF679 63 28.9 Weakly correlated
15 ZKSCAN1 52 160.0 Weakly correlated
16 ZNF263 52 180.0 Weakly correlated
17 ZNF394 52 99.0 Weakly correlated
18 ZNF84 52 99.0 Weakly correlated
19 ZNF92 49 28.9 Weakly correlated
20 ZNF534 40 19.6 Weakly correlated
21 ZNF705B 35 28.9 Weakly correlated
22 ZNF133 30 99.0 Weakly correlated
23 ZNF766 30 43.0 Weakly correlated
24 ZNF324 28 99.0 Weakly correlated
25 ZNF563 23 28.9 Weakly correlated
26 ZNF101 21 43.0 Weakly correlated
27 ZNF479 21 6.4 Weakly correlated
28 ZNF75D 21 94.0 Weakly correlated
29 ZNF879 19 99.0 Weakly correlated
30 ZFP37 18 99.0 Weakly correlated
31 ZNF354A 17 99.0 Weakly correlated
32 ZNF425 17 94.0 Weakly correlated
33 ZNF558 17 99.0 Weakly correlated
34 ZNF705D 17 28.9 Weakly correlated
35 ZNF786 17 99.0 Weakly correlated
36 ZNF250 16 99.0 Weakly correlated
37 ZNF140 15 99.0 Weakly correlated
38 ZNF18 15 160.0 Weakly correlated
39 ZNF274 15 99.0 Weakly correlated
40 ZNF554 15 99.0 Weakly correlated
41 ZNF2 14 99.0 Weakly correlated
42 ZNF33A 14 99.0 Weakly correlated
43 ZFP57 12 87.0 Weakly correlated
44 ZNF41 11 99.0 Weakly correlated
45 ZNF528 11 43.0 Weakly correlated
46 ZNF585A 11 99.0 Weakly correlated
47 ZNF182 10 99.0 Weakly correlated
48 ZNF485 10 94.0 Weakly correlated
49 ZNF257 9 0.0 Weakly correlated
50 ZNF589 9 28.9 Weakly correlated
51 ZNF610 9 28.9 Weakly correlated
52 ZNF701 9 28.9 Weakly correlated
53 ZNF735 9 28.9 Weakly correlated
54 ZNF429 8 28.9 Weakly correlated
55 ZNF441 8 43.0 Weakly correlated
56 ZNF506 8 28.9 Weakly correlated
57 ZNF547 8 74.0 Highly correlated
58 ZNF585B 8 99.0 Weakly correlated
59 ZFP69B 7 99.0 Weakly correlated
60 ZNF136 7 74.0 Highly correlated
61 ZNF677 7 99.0 Weakly correlated
62 ZNF175 6 94.0 Weakly correlated
63 ZNF287 6 99.0 Weakly correlated
64 ZNF584 6 99.0 Weakly correlated
65 ZNF695 6 28.9 Weakly correlated
66 ZNF81 6 99.0 Weakly correlated
67 ZNF197 5 99.0 Weakly correlated
68 ZNF320 5 28.9 Weakly correlated
69 ZNF880 5 28.9 Weakly correlated
70 ZKSCAN8 4 160.0 Weakly correlated
71 ZNF17 4 69.0 Moderately correlated
72 ZNF264 4 99.0 Weakly correlated
73 ZNF28 4 28.9 Weakly correlated
74 ZNF468 4 28.9 Weakly correlated
75 ZNF510 4 99.0 Weakly correlated
76 ZNF519 4 19.6 Weakly correlated
77 ZNF549 4 87.0 Weakly correlated
78 ZNF586 4 43.0 Weakly correlated
79 ZNF597 4 94.0 Weakly correlated
80 PRDM9 3 0.0 Weakly correlated
81 ZFP90 3 99.0 Weakly correlated
82 ZNF169 3 94.0 Weakly correlated
83 ZNF202 3 160.0 Weakly correlated
84 ZNF284 3 43.0 Weakly correlated
85 ZNF483 3 99.0 Weakly correlated
86 ZNF557 3 15.2 Weakly correlated
87 ZNF707 3 74.0 Highly correlated
88 ZNF749 3 28.9 Weakly correlated
89 ZFP69 2 99.0 Weakly correlated
90 ZIK1 2 87.0 Weakly correlated
91 ZNF114 2 28.9 Weakly correlated
92 ZNF334 2 99.0 Weakly correlated
93 ZNF347 2 43.0 Weakly correlated
94 ZNF671 2 94.0 Weakly correlated
95 ZNF778 2 74.0 Highly correlated
96 ZNF878 2 43.0 Weakly correlated
97 ZFP30 1 99.0 Weakly correlated
98 ZFP82 1 99.0 Weakly correlated
99 ZKSCAN5 1 160.0 Weakly correlated
100 ZNF141 1 43.0 Weakly correlated
101 ZNF177 1 94.0 Weakly correlated
102 ZNF211 1 94.0 Weakly correlated
103 ZNF225 1 74.0 Highly correlated
104 ZNF230 1 28.9 Weakly correlated
105 ZNF26 1 99.0 Weakly correlated
106 ZNF273 1 28.9 Weakly correlated
107 ZNF282 1 319.0 Weakly correlated
108 ZNF331 1 94.0 Weakly correlated
109 ZNF337 1 43.0 Weakly correlated
110 ZNF417 1 28.9 Weakly correlated
111 ZNF418 1 43.0 Weakly correlated
112 ZNF432 1 99.0 Weakly correlated
113 ZNF43 1 43.0 Weakly correlated
114 ZNF440 1 28.9 Weakly correlated
115 ZNF500 1 160.0 Weakly correlated
116 ZNF560 1 43.0 Weakly correlated
117 ZNF567 1 99.0 Weakly correlated
118 ZNF57 1 28.9 Weakly correlated
119 ZNF583 1 99.0 Weakly correlated
120 ZNF587B 1 8.6 Weakly correlated
121 ZNF641 1 99.0 Weakly correlated
122 ZNF649 1 28.9 Weakly correlated
123 ZNF66 1 0.0 Weakly correlated
124 ZNF674 1 99.0 Weakly correlated
125 ZNF675 1 8.6 Weakly correlated
126 ZNF681 1 28.9 Weakly correlated
127 ZNF700 1 28.9 Weakly correlated
128 ZNF716 1 19.6 Weakly correlated
129 ZNF765 1 8.6 Weakly correlated
130 ZNF777 1 319.0 Weakly correlated
131 ZNF789 1 99.0 Weakly correlated
132 ZNF799 1 43.0 Weakly correlated
133 ZNF808 1 19.6 Weakly correlated
134 ZNF845 1 28.9 Weakly correlated
135 ZNF850 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 442 94.0 Weakly correlated
2 ZNF490 287 43.0 Weakly correlated
3 ZNF248 175 99.0 Weakly correlated
4 ZNF382 161 99.0 Weakly correlated
5 ZNF471 107 94.0 Weakly correlated
6 ZNF723 93 15.2 Weakly correlated
7 ZNF486 80 8.6 Weakly correlated
8 ZNF160 75 74.0 Highly correlated
9 ZNF8 74 99.0 Weakly correlated
10 ZIM3 73 87.0 Weakly correlated
11 ZNF793 69 99.0 Weakly correlated
12 ZNF680 49 28.9 Weakly correlated
13 ZNF84 45 99.0 Weakly correlated
14 ZNF317 36 99.0 Weakly correlated
15 ZNF534 30 19.6 Weakly correlated
16 ZNF92 26 28.9 Weakly correlated
17 ZKSCAN1 23 160.0 Weakly correlated
18 ZNF563 22 28.9 Weakly correlated
19 ZNF263 22 180.0 Weakly correlated
20 ZNF250 17 99.0 Weakly correlated
21 ZNF879 17 99.0 Weakly correlated
22 ZNF133 16 99.0 Weakly correlated
23 ZNF354A 14 99.0 Weakly correlated
24 ZNF101 14 43.0 Weakly correlated
25 ZNF786 13 99.0 Weakly correlated
26 ZNF324 12 99.0 Weakly correlated
27 ZNF479 8 6.4 Weakly correlated
28 ZNF766 8 43.0 Weakly correlated
29 ZNF33A 8 99.0 Weakly correlated
30 ZNF485 7 94.0 Weakly correlated
31 ZNF585A 7 99.0 Weakly correlated
32 ZNF425 7 94.0 Weakly correlated
33 ZNF735 6 28.9 Weakly correlated
34 ZNF677 6 99.0 Weakly correlated
35 ZNF705B 6 28.9 Weakly correlated
36 ZNF701 6 28.9 Weakly correlated
37 ZNF81 6 99.0 Weakly correlated
38 ZNF287 5 99.0 Weakly correlated
39 ZNF140 5 99.0 Weakly correlated
40 ZNF75D 5 94.0 Weakly correlated
41 ZNF429 5 28.9 Weakly correlated
42 ZNF695 4 28.9 Weakly correlated
43 ZFP57 4 87.0 Weakly correlated
44 ZNF28 3 28.9 Weakly correlated
45 ZNF506 3 28.9 Weakly correlated
46 ZNF558 3 99.0 Weakly correlated
47 ZNF257 3 0.0 Weakly correlated
48 ZFP90 3 99.0 Weakly correlated
49 ZNF749 3 28.9 Weakly correlated
50 ZNF679 3 28.9 Weakly correlated
51 ZNF468 3 28.9 Weakly correlated
52 ZNF18 3 160.0 Weakly correlated
53 ZNF136 2 74.0 Highly correlated
54 ZNF394 2 99.0 Weakly correlated
55 ZNF585B 2 99.0 Weakly correlated
56 ZNF549 2 87.0 Weakly correlated
57 ZNF320 2 28.9 Weakly correlated
58 ZNF169 2 94.0 Weakly correlated
59 ZNF554 2 99.0 Weakly correlated
60 ZNF114 1 28.9 Weakly correlated
61 ZNF589 1 28.9 Weakly correlated
62 ZNF483 1 99.0 Weakly correlated
63 ZNF584 1 99.0 Weakly correlated
64 ZKSCAN5 1 160.0 Weakly correlated
65 ZNF597 1 94.0 Weakly correlated
66 ZNF264 1 99.0 Weakly correlated
67 ZNF671 1 94.0 Weakly correlated
68 ZNF175 1 94.0 Weakly correlated
69 ZIK1 1 87.0 Weakly correlated
70 ZNF716 1 19.6 Weakly correlated
71 ZFP82 1 99.0 Weakly correlated
72 ZNF765 1 8.6 Weakly correlated
73 ZNF560 1 43.0 Weakly correlated
74 ZNF347 1 43.0 Weakly correlated
75 ZNF610 1 28.9 Weakly correlated
76 ZNF418 1 43.0 Weakly correlated
77 ZNF705D 1 28.9 Weakly correlated
78 ZNF331 1 94.0 Weakly correlated
79 ZNF707 1 74.0 Highly correlated
80 ZNF202 1 160.0 Weakly correlated
81 ZNF197 1 99.0 Weakly correlated
82 ZNF41 1 99.0 Weakly correlated
83 ZNF519 1 19.6 Weakly correlated
84 ZNF432 1 99.0 Weakly correlated
85 ZNF225 1 74.0 Highly correlated
86 ZNF845 1 28.9 Weakly correlated
87 ZNF641 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZKSCAN1 160.0 Weakly correlated
2 ZNF133 99.0 Weakly correlated
3 ZNF251 94.0 Weakly correlated
4 ZNF263 180.0 Weakly correlated
5 ZNF425 94.0 Weakly correlated
6 ZNF486 8.6 Weakly correlated
7 ZNF680 28.9 Weakly correlated
8 ZNF723 15.2 Weakly correlated
9 ZNF786 99.0 Weakly correlated
10 ZNF793 99.0 Weakly correlated
11 ZNF84 99.0 Weakly correlated
12 ZNF92 28.9 Weakly correlated