ZRdb KZFP & Repeats
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LINE_L1MA1_3END

  • Name
    L1MA1_3END
  • Repbase
    L1MA1
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000256
Description :

ORF2 ends at bp 684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaataaccagaatatataaggagctcaaacaactctataggaaaaaatctaataatccgatcaaaaaatgggcaaaagatttgaatagacatttctcaaaagaagacatacaaatggcaaacaggcatatgaaaaggtgctcaacatcattgatcatcagagaaatgcaaatcaaaactacaatgagatatcatctcaccccagttaaaatggcttatatccaaaagacaggcaataacaaatgctggcgaggatgtggagaaaagggaacccttgtacactgttggtgggaatgtaaattagtacaaccactatggagaacagtttggaggttcctcaaaaaactaaaaattgagctaccatatgatccagcaatcccactgctgggtatatacccaaaagaaaggaaatcagtatatcgaagagatatctgcactcctatgtttgttgcagcactgtttacaatagctaagatttggaagcaacctaagtgtccatcaacagatgaatggataaagaaaatgtggtacatatacacaatggagtactattcagccataaaaaagaatgagatccagtcatttgcaacaacatggatggaactggagatcattatgttaagtgaaataagccaggcacagaaagacaaacatcgcatgttctcacttatttgtgggatctaaaaatcaaaacaattgaactcatggacatagagagtagaaggatggttaccagaggctgggaagggtagtggggggctgggggggaggtggggatggttaatgggtacaaaaaaaataagaaagaatgaataagacctactatttgatagcacaacagggtgactatagtcaataataacttaattgtacattttaaaataacttaaagagtgtaattggattgtttgtaactcaaaggataaatgcttgaggggatggataccccattctccatgatgtgcttatttcacattgcatgcctgtatcaaaacatctcatgtaccccataaatatatacacctactatgtacccacaaaaattaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 283 99.0 Weakly correlated
2 ZNF251 187 94.0 Weakly correlated
3 ZNF490 157 43.0 Weakly correlated
4 ZNF160 85 74.0 Highly correlated
5 ZNF471 65 94.0 Weakly correlated
6 ZNF8 61 99.0 Weakly correlated
7 ZNF680 60 28.9 Weakly correlated
8 ZNF793 59 99.0 Weakly correlated
9 ZNF723 55 15.2 Weakly correlated
10 ZIM3 52 87.0 Weakly correlated
11 ZNF486 52 8.6 Weakly correlated
12 ZNF248 50 99.0 Weakly correlated
13 ZNF317 47 99.0 Weakly correlated
14 ZNF679 43 28.9 Weakly correlated
15 ZNF92 32 28.9 Weakly correlated
16 ZNF394 24 99.0 Weakly correlated
17 ZNF84 23 99.0 Weakly correlated
18 ZKSCAN1 22 160.0 Weakly correlated
19 ZNF324 20 99.0 Weakly correlated
20 ZNF274 17 99.0 Weakly correlated
21 ZNF705B 17 28.9 Weakly correlated
22 ZNF263 16 180.0 Weakly correlated
23 ZNF786 15 99.0 Weakly correlated
24 ZNF534 14 19.6 Weakly correlated
25 ZNF705D 14 28.9 Weakly correlated
26 ZNF766 14 43.0 Weakly correlated
27 ZNF33A 13 99.0 Weakly correlated
28 ZNF133 11 99.0 Weakly correlated
29 ZNF140 11 99.0 Weakly correlated
30 ZNF257 9 0.0 Weakly correlated
31 ZNF41 9 99.0 Weakly correlated
32 ZNF479 9 6.4 Weakly correlated
33 ZNF169 8 94.0 Weakly correlated
34 ZNF2 8 99.0 Weakly correlated
35 ZNF610 8 28.9 Weakly correlated
36 ZNF101 7 43.0 Weakly correlated
37 ZNF18 7 160.0 Weakly correlated
38 ZFP37 6 99.0 Weakly correlated
39 ZNF354A 6 99.0 Weakly correlated
40 ZNF506 6 28.9 Weakly correlated
41 ZNF701 6 28.9 Weakly correlated
42 ZNF136 5 74.0 Highly correlated
43 ZNF182 5 99.0 Weakly correlated
44 ZNF81 5 99.0 Weakly correlated
45 ZFP90 4 99.0 Weakly correlated
46 ZNF250 4 99.0 Weakly correlated
47 ZNF320 4 28.9 Weakly correlated
48 ZNF585B 4 99.0 Weakly correlated
49 ZNF707 4 74.0 Highly correlated
50 ZNF735 4 28.9 Weakly correlated
51 ZNF75D 4 94.0 Weakly correlated
52 ZNF879 4 99.0 Weakly correlated
53 ZFP69B 3 99.0 Weakly correlated
54 ZKSCAN8 3 160.0 Weakly correlated
55 ZNF175 3 94.0 Weakly correlated
56 ZNF17 3 69.0 Moderately correlated
57 ZNF202 3 160.0 Weakly correlated
58 ZNF28 3 28.9 Weakly correlated
59 ZNF429 3 28.9 Weakly correlated
60 ZNF485 3 94.0 Weakly correlated
61 ZNF519 3 19.6 Weakly correlated
62 ZNF547 3 74.0 Highly correlated
63 ZNF585A 3 99.0 Weakly correlated
64 ZNF589 3 28.9 Weakly correlated
65 ZFP57 2 87.0 Weakly correlated
66 ZNF114 2 28.9 Weakly correlated
67 ZNF157 2 99.0 Weakly correlated
68 ZNF197 2 99.0 Weakly correlated
69 ZNF282 2 319.0 Weakly correlated
70 ZNF337 2 43.0 Weakly correlated
71 ZNF425 2 94.0 Weakly correlated
72 ZNF528 2 43.0 Weakly correlated
73 ZNF530 2 28.9 Weakly correlated
74 ZNF549 2 87.0 Weakly correlated
75 ZNF558 2 99.0 Weakly correlated
76 ZNF563 2 28.9 Weakly correlated
77 ZNF677 2 99.0 Weakly correlated
78 PRDM9 1 0.0 Weakly correlated
79 ZFP28 1 99.0 Weakly correlated
80 ZFP82 1 99.0 Weakly correlated
81 ZNF10 1 99.0 Weakly correlated
82 ZNF184 1 99.0 Weakly correlated
83 ZNF211 1 94.0 Weakly correlated
84 ZNF230 1 28.9 Weakly correlated
85 ZNF264 1 99.0 Weakly correlated
86 ZNF284 1 43.0 Weakly correlated
87 ZNF287 1 99.0 Weakly correlated
88 ZNF334 1 99.0 Weakly correlated
89 ZNF347 1 43.0 Weakly correlated
90 ZNF440 1 28.9 Weakly correlated
91 ZNF44 1 43.0 Weakly correlated
92 ZNF468 1 28.9 Weakly correlated
93 ZNF470 1 99.0 Weakly correlated
94 ZNF483 1 99.0 Weakly correlated
95 ZNF554 1 99.0 Weakly correlated
96 ZNF568 1 99.0 Weakly correlated
97 ZNF573 1 94.0 Weakly correlated
98 ZNF584 1 99.0 Weakly correlated
99 ZNF586 1 43.0 Weakly correlated
100 ZNF597 1 94.0 Weakly correlated
101 ZNF611 1 19.6 Weakly correlated
102 ZNF649 1 28.9 Weakly correlated
103 ZNF66 1 0.0 Weakly correlated
104 ZNF675 1 8.6 Weakly correlated
105 ZNF730 1 19.6 Weakly correlated
106 ZNF780A 1 43.0 Weakly correlated
107 ZNF808 1 19.6 Weakly correlated
108 ZNF845 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 170 94.0 Weakly correlated
2 ZNF490 152 43.0 Weakly correlated
3 ZNF160 86 74.0 Highly correlated
4 ZNF382 78 99.0 Weakly correlated
5 ZNF471 67 94.0 Weakly correlated
6 ZNF8 57 99.0 Weakly correlated
7 ZNF248 48 99.0 Weakly correlated
8 ZNF723 47 15.2 Weakly correlated
9 ZIM3 39 87.0 Weakly correlated
10 ZNF793 37 99.0 Weakly correlated
11 ZNF486 34 8.6 Weakly correlated
12 ZNF680 22 28.9 Weakly correlated
13 ZNF84 19 99.0 Weakly correlated
14 ZNF317 14 99.0 Weakly correlated
15 ZNF92 14 28.9 Weakly correlated
16 ZNF324 14 99.0 Weakly correlated
17 ZKSCAN1 10 160.0 Weakly correlated
18 ZNF33A 9 99.0 Weakly correlated
19 ZNF786 9 99.0 Weakly correlated
20 ZNF534 8 19.6 Weakly correlated
21 ZNF263 8 180.0 Weakly correlated
22 ZNF140 8 99.0 Weakly correlated
23 ZNF101 6 43.0 Weakly correlated
24 ZNF705B 6 28.9 Weakly correlated
25 ZNF133 6 99.0 Weakly correlated
26 ZNF136 5 74.0 Highly correlated
27 ZNF354A 5 99.0 Weakly correlated
28 ZNF701 5 28.9 Weakly correlated
29 ZNF479 4 6.4 Weakly correlated
30 ZNF81 4 99.0 Weakly correlated
31 ZNF735 4 28.9 Weakly correlated
32 ZNF705D 4 28.9 Weakly correlated
33 ZNF250 4 99.0 Weakly correlated
34 ZFP90 4 99.0 Weakly correlated
35 ZNF394 3 99.0 Weakly correlated
36 ZNF879 3 99.0 Weakly correlated
37 ZNF677 3 99.0 Weakly correlated
38 ZNF707 2 74.0 Highly correlated
39 ZNF320 2 28.9 Weakly correlated
40 ZNF610 2 28.9 Weakly correlated
41 ZNF679 2 28.9 Weakly correlated
42 ZNF766 2 43.0 Weakly correlated
43 ZNF75D 2 94.0 Weakly correlated
44 ZNF585A 2 99.0 Weakly correlated
45 ZNF429 2 28.9 Weakly correlated
46 ZNF202 2 160.0 Weakly correlated
47 ZNF10 1 99.0 Weakly correlated
48 PRDM9 1 0.0 Weakly correlated
49 ZNF169 1 94.0 Weakly correlated
50 ZFP82 1 99.0 Weakly correlated
51 ZNF211 1 94.0 Weakly correlated
52 ZNF563 1 28.9 Weakly correlated
53 ZNF530 1 28.9 Weakly correlated
54 ZFP57 1 87.0 Weakly correlated
55 ZFP28 1 99.0 Weakly correlated
56 ZNF282 1 319.0 Weakly correlated
57 ZNF337 1 43.0 Weakly correlated
58 ZNF597 1 94.0 Weakly correlated
59 ZNF175 1 94.0 Weakly correlated
60 ZNF44 1 43.0 Weakly correlated
61 ZNF264 1 99.0 Weakly correlated
62 ZNF257 1 0.0 Weakly correlated
63 ZNF485 1 94.0 Weakly correlated
64 ZNF287 1 99.0 Weakly correlated
65 ZNF440 1 28.9 Weakly correlated
66 ZNF41 1 99.0 Weakly correlated
67 ZNF347 1 43.0 Weakly correlated
68 ZNF506 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZKSCAN1 160.0 Weakly correlated
2 ZNF248 99.0 Weakly correlated
3 ZNF251 94.0 Weakly correlated
4 ZNF486 8.6 Weakly correlated
5 ZNF680 28.9 Weakly correlated
6 ZNF723 15.2 Weakly correlated
7 ZNF786 99.0 Weakly correlated
8 ZNF793 99.0 Weakly correlated
9 ZNF84 99.0 Weakly correlated
10 ZNF92 28.9 Weakly correlated