ZRdb KZFP & Repeats
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LINE_L1MA10_3END

  • Name
    L1MA10_3END
  • Repbase
    L1MA10
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000255
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaatatccaaaatatataaggaactcctacaactcaatagcaaaaaaacaaataacccgattaaaaaatgggcaaaggacctgaatagacatttctccaaagaagacatacaaatggccaacaggtatatgaaaaggtgctcaacatcactaatcatcagggaaatgcaaatcaaaaccacaatgagatatcacctcacacctgttaggatggctattatcaaaaaaacaaaagataacaagtgttggcgaggatgtggagaaannggaacccttgtacactgttggtgggaatgtaaantggtgcagccactatggaaaacagtatggaggttcctcaaaaaattaaaaatagaactaccatatgatccagcaatcccacttctgggtatatatccaaaagaattgaaatcaggatctcgaagagatatctgcactcccatgttcattgcagcattattcacaatagccaagatatggaaacaacctaaatgtccatcgacggatgaatggataaagaaaatgtggtatatacatacaatggaatattattcagccttaaaaaagaaggaaatcctgccatttgcgacaacatggatgaacctggaggacattatgctaagtgaaataagccagncacagaaggacaaatactgcatgattccacttatatgaggnatctaaaatagtcaaactcatagaagcagagagtagaatggtggttgccaggggctggggggagggggaaatggggagttgttgntcaangggtataaagtttcagttatgcaagatgaataagttctagagatctgctgtacaacatagtgcctatagttaacaatactgtattgtgcacttaaaaatttgttaagagggtagatctcatgttaagtgttcttaccacacaacaaaaaaaaagcacaaggaaacttttggaggtgatggatatgtttattaccttgattgtggtgatggtttcacgggtgtatgcntatgtccaaactcatcaaattgtatacattaaatatgtgcagttttttgtatgtcaattatacctcaataaagctgtttaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 123 99.0 Highly correlated
2 ZNF251 82 94.0 Moderately correlated
3 ZNF766 35 43.0 Weakly correlated
4 ZNF680 30 28.9 Weakly correlated
5 ZIM3 29 87.0 Moderately correlated
6 ZNF263 24 180.0 Weakly correlated
7 ZNF317 23 99.0 Highly correlated
8 ZNF133 22 99.0 Highly correlated
9 ZNF92 17 28.9 Weakly correlated
10 ZNF394 17 99.0 Highly correlated
11 ZNF471 16 94.0 Moderately correlated
12 ZNF705B 16 28.9 Weakly correlated
13 ZNF136 15 74.0 Weakly correlated
14 ZNF679 14 28.9 Weakly correlated
15 ZNF705D 14 28.9 Weakly correlated
16 ZNF723 12 15.2 Weakly correlated
17 ZNF589 12 28.9 Weakly correlated
18 ZNF160 11 74.0 Weakly correlated
19 ZNF175 11 94.0 Moderately correlated
20 ZNF248 11 99.0 Highly correlated
21 ZNF490 10 43.0 Weakly correlated
22 ZKSCAN8 10 160.0 Weakly correlated
23 ZNF101 9 43.0 Weakly correlated
24 ZNF2 9 99.0 Highly correlated
25 ZFP37 8 99.0 Highly correlated
26 ZNF534 8 19.6 Weakly correlated
27 ZNF584 7 99.0 Highly correlated
28 ZNF75D 7 94.0 Moderately correlated
29 ZNF81 7 99.0 Highly correlated
30 ZNF84 6 99.0 Highly correlated
31 ZKSCAN1 6 160.0 Weakly correlated
32 ZNF793 6 99.0 Highly correlated
33 ZNF18 6 160.0 Weakly correlated
34 ZNF485 5 94.0 Moderately correlated
35 ZNF257 5 0.0 Weakly correlated
36 ZNF707 5 74.0 Weakly correlated
37 ZNF140 5 99.0 Highly correlated
38 ZNF585A 4 99.0 Highly correlated
39 ZNF597 4 94.0 Moderately correlated
40 ZNF610 4 28.9 Weakly correlated
41 ZNF486 4 8.6 Weakly correlated
42 ZNF8 4 99.0 Highly correlated
43 ZFP28 4 99.0 Highly correlated
44 ZNF197 4 99.0 Highly correlated
45 ZNF324 4 99.0 Highly correlated
46 ZNF585B 3 99.0 Highly correlated
47 ZNF182 3 99.0 Highly correlated
48 ZNF429 3 28.9 Weakly correlated
49 ZNF479 3 6.4 Weakly correlated
50 ZNF879 3 99.0 Highly correlated
51 ZNF41 3 99.0 Highly correlated
52 ZFP69B 3 99.0 Highly correlated
53 ZNF701 3 28.9 Weakly correlated
54 ZNF28 3 28.9 Weakly correlated
55 ZNF287 3 99.0 Highly correlated
56 ZNF337 3 43.0 Weakly correlated
57 ZNF823 3 43.0 Weakly correlated
58 ZNF558 3 99.0 Highly correlated
59 ZNF736 2 43.0 Weakly correlated
60 ZIK1 2 87.0 Moderately correlated
61 ZNF250 2 99.0 Highly correlated
62 ZNF169 2 94.0 Moderately correlated
63 ZNF735 2 28.9 Weakly correlated
64 ZNF568 2 99.0 Highly correlated
65 ZNF528 2 43.0 Weakly correlated
66 ZNF506 2 28.9 Weakly correlated
67 ZNF33A 2 99.0 Highly correlated
68 ZNF91 2 6.0 Weakly correlated
69 ZNF808 1 19.6 Weakly correlated
70 ZKSCAN5 1 160.0 Weakly correlated
71 ZNF780A 1 43.0 Weakly correlated
72 ZNF845 1 28.9 Weakly correlated
73 ZNF10 1 99.0 Highly correlated
74 ZNF114 1 28.9 Weakly correlated
75 ZFP57 1 87.0 Moderately correlated
76 RBAK 1 99.0 Highly correlated
77 ZNF627 1 74.0 Weakly correlated
78 ZNF17 1 69.0 Weakly correlated
79 ZNF700 1 28.9 Weakly correlated
80 ZNF695 1 28.9 Weakly correlated
81 ZNF211 1 94.0 Moderately correlated
82 ZNF436 1 180.0 Weakly correlated
83 ZNF274 1 99.0 Highly correlated
84 ZNF284 1 43.0 Weakly correlated
85 ZNF586 1 43.0 Weakly correlated
86 ZNF554 1 99.0 Highly correlated
87 ZNF519 1 19.6 Weakly correlated
88 ZNF354A 1 99.0 Highly correlated
89 ZNF483 1 99.0 Highly correlated
90 ZNF468 1 28.9 Weakly correlated
91 ZNF445 1 99.0 Highly correlated
92 ZNF441 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 70 94.0 Moderately correlated
2 ZNF133 17 99.0 Highly correlated
3 ZNF382 16 99.0 Highly correlated
4 ZNF471 14 94.0 Moderately correlated
5 ZIM3 12 87.0 Moderately correlated
6 ZNF136 12 74.0 Weakly correlated
7 ZNF248 11 99.0 Highly correlated
8 ZNF160 10 74.0 Weakly correlated
9 ZNF490 9 43.0 Weakly correlated
10 ZNF680 9 28.9 Weakly correlated
11 ZNF793 5 99.0 Highly correlated
12 ZNF317 5 99.0 Highly correlated
13 ZNF92 5 28.9 Weakly correlated
14 ZNF8 4 99.0 Highly correlated
15 ZNF81 4 99.0 Highly correlated
16 ZNF101 4 43.0 Weakly correlated
17 ZNF84 4 99.0 Highly correlated
18 ZNF75D 4 94.0 Moderately correlated
19 ZNF723 4 15.2 Weakly correlated
20 ZNF534 3 19.6 Weakly correlated
21 ZNF766 3 43.0 Weakly correlated
22 ZNF707 3 74.0 Weakly correlated
23 ZNF735 2 28.9 Weakly correlated
24 ZNF250 2 99.0 Highly correlated
25 ZNF585A 2 99.0 Highly correlated
26 ZNF287 2 99.0 Highly correlated
27 ZNF337 2 43.0 Weakly correlated
28 ZNF263 2 180.0 Weakly correlated
29 ZNF257 1 0.0 Weakly correlated
30 ZNF558 1 99.0 Highly correlated
31 ZNF705D 1 28.9 Weakly correlated
32 ZNF823 1 43.0 Weakly correlated
33 ZNF705B 1 28.9 Weakly correlated
34 ZFP57 1 87.0 Moderately correlated
35 ZNF485 1 94.0 Moderately correlated
36 ZNF169 1 94.0 Moderately correlated
37 ZNF140 1 99.0 Highly correlated
38 ZNF354A 1 99.0 Highly correlated
39 ZNF486 1 8.6 Weakly correlated
40 ZNF679 1 28.9 Weakly correlated
41 ZNF429 1 28.9 Weakly correlated
42 ZNF33A 1 99.0 Highly correlated
43 ZNF324 1 99.0 Highly correlated
44 ZNF879 1 99.0 Highly correlated
45 ZNF597 1 94.0 Moderately correlated
46 ZNF479 1 6.4 Weakly correlated
47 ZNF18 1 160.0 Weakly correlated
48 ZNF10 1 99.0 Highly correlated
49 ZNF483 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF251 94.0 Moderately correlated
2 ZNF680 28.9 Weakly correlated