ZRdb KZFP & Repeats
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LINE_L1M8_5END

  • Name
    L1M8_5END
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000254
Description :

gag ORF: ~735-1718, pol ORF starts at pos ~2241.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggaggattctgggaagatggcggcggcggcggcatagtttttgaatctccccgaatccccccataaaaacagacagagcaactaggatagcaaaaccaaaaacccacggacaacatctacaacaaaactaggtgacaaggtatccccacgaaccccaaaatacgagcgggtggggacaaaccaccgacagctacaagacccgcgtggtatcagcatctgtgcgggaggaagcagagggaagcaacggggcgttctgacggncctgagaacaggagaaccccaaaatcgccaacaggtactcactggaaagcgcggcgggccaatctgagaacagcagccgaaactgggagggggctttgcaggctccaattcgcgggtgagtgcaaggggnccgcggtaaggtctgaaggngctggagcagtctgggccctatgaactctcgaaactaaccagccgaagctcccttccaggacaaagccccacactgaggagaaactgctgggagtagaatccaaattgagcaggacagggacaataggggcaaaggaaagagaaggtccagataaaagtgggggaggggaacagagncaggagatctcagaaagtacgaggccatatttttgaacacttcgcgaaaacaacagaagagggagctctagagccgtgaagctagaaaagctatcctggcccacccctccctcctaaaagtncaggaaaactnatttcacntaaaaatgagcaacagaaaaggatcgcggtcgaatcccatacaaagttattataagaaaaaagagaataaggagcagaataacgtccctacagacaatgaaagcacgccagaaagacatgcccacaaaacagatgaaaactgtaacctaatatttcaaaacgagctaaaagaaattaagaaaatgatagaagctatgaaagaacaacataaatcagaattagaaaaactcagaaatgaggtgatagaactcaggaaagaattagaaataaaagaaaaaatcatttcagaaatgaagactaaactagaaggaacacaagagcgaataaacacaacagataatgccttaagagaaatagaagatgaaaaggaggaaaattttaaaaatcaaaaagaaatgaagaaagagataaaaaggattcgagagaaagtgacagatatagaagataggcaaagaagatccaacatacgtataataggagtccccgaagaagaaaaccaaagcaatggaacagaacaaatactaaaaactataattcaagaaaactttcctgaaataaaaaaagacttgaaactacatattgaaagggcacaccgcgtacctgggaaaatcgacccagaacggccaacaccgagacatattctagtaaaactactggactttaaagaaaaagaaaaaatcctttgggcatccaggcaaaaagaccaagtcacttataagggaaagaaaatcagattgtcatcagacttttcgacagcaacgctttatgccagaagacaatggagtaacatatttaagatactcaaggaaagaaaatgtgagccaaggattttatatccagccaaactgaccttcaagtataaaggccacagacaaactgttatgaacatgcaagaactcagggaatattgttcccatgagcccttcctgaggaatctactagagaacgagcttcagacaaccaaaatgactggagagacatcgacataaggactggtggtgagcattaaatatatatttacctgtagaactaagactaaatgatggttataagggaganagtatagtatgtaatggctatatgctctgacaatgtagatacagtacaactatcaaaaaatgggaggagagaatggggagagtatatgaaaagtagaataagctcgctgattgccttataggtattaactgggagtaaaaggatattacttcaaatcagatgctgggggagaggagaggggaggggaagaagaggttactagctaatttcaatattgctcatagtagggaaccaatagacantanccaaaaaagaggggactaagggtattatataaaggtattagtataaaggtaaccattagaacaaaaatacaaaccttcctaaataccaaaaaaatatacaaagaaaaagaaagaaaacagaccacatagtgaaagatagaaaatacganatatanacataacataaaataatatgacagaactgagaccaaacatatcgatcatatcaataaatgtaaatgggcttaactcacctattaaaagaaaaagattttcagattggctnacaaagcaaaatccaactctatgctgtatacaagagacacacctaaaacaaagagat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF133 60 99.0 Highly correlated
2 ZNF382 42 99.0 Highly correlated
3 ZNF92 41 28.9 Weakly correlated
4 ZNF317 31 99.0 Highly correlated
5 ZNF680 29 28.9 Weakly correlated
6 ZIM3 18 87.0 Moderately correlated
7 ZNF793 15 99.0 Highly correlated
8 ZFP37 14 99.0 Highly correlated
9 ZNF766 13 43.0 Weakly correlated
10 ZNF705B 11 28.9 Weakly correlated
11 ZNF723 11 15.2 Weakly correlated
12 ZNF394 11 99.0 Highly correlated
13 ZNF679 10 28.9 Weakly correlated
14 ZNF263 10 180.0 Weakly correlated
15 ZNF610 8 28.9 Weakly correlated
16 ZNF534 8 19.6 Weakly correlated
17 ZNF479 8 6.4 Weakly correlated
18 ZNF175 8 94.0 Moderately correlated
19 ZNF597 6 94.0 Moderately correlated
20 ZNF485 6 94.0 Moderately correlated
21 ZNF558 6 99.0 Highly correlated
22 ZNF2 6 99.0 Highly correlated
23 ZNF589 6 28.9 Weakly correlated
24 ZNF324 5 99.0 Highly correlated
25 ZNF251 5 94.0 Moderately correlated
26 ZNF28 4 28.9 Weakly correlated
27 ZNF486 4 8.6 Weakly correlated
28 ZNF101 4 43.0 Weakly correlated
29 ZNF705D 4 28.9 Weakly correlated
30 ZFP57 4 87.0 Moderately correlated
31 ZNF197 4 99.0 Highly correlated
32 ZNF786 3 99.0 Highly correlated
33 ZKSCAN1 3 160.0 Weakly correlated
34 ZNF528 3 43.0 Weakly correlated
35 ZNF41 3 99.0 Highly correlated
36 ZNF584 3 99.0 Highly correlated
37 ZNF701 3 28.9 Weakly correlated
38 ZNF18 3 160.0 Weakly correlated
39 ZNF136 2 74.0 Weakly correlated
40 ZNF75D 2 94.0 Moderately correlated
41 ZKSCAN8 2 160.0 Weakly correlated
42 ZNF585B 2 99.0 Highly correlated
43 ZNF441 2 43.0 Weakly correlated
44 ZNF425 2 94.0 Moderately correlated
45 ZNF160 2 74.0 Weakly correlated
46 ZNF33A 2 99.0 Highly correlated
47 ZNF257 2 0.0 Weakly correlated
48 ZNF284 2 43.0 Weakly correlated
49 ZNF554 1 99.0 Highly correlated
50 ZNF765 1 8.6 Weakly correlated
51 ZNF135 1 94.0 Moderately correlated
52 ZNF700 1 28.9 Weakly correlated
53 ZNF93 1 8.6 Weakly correlated
54 ZNF8 1 99.0 Highly correlated
55 ZNF878 1 43.0 Weakly correlated
56 ZNF84 1 99.0 Highly correlated
57 ZNF823 1 43.0 Weakly correlated
58 ZNF730 1 19.6 Weakly correlated
59 ZFP69B 1 99.0 Highly correlated
60 ZNF75A 1 94.0 Moderately correlated
61 ZFP28 1 99.0 Highly correlated
62 ZNF248 1 99.0 Highly correlated
63 ZNF253 1 19.6 Weakly correlated
64 ZNF287 1 99.0 Highly correlated
65 ZNF189 1 99.0 Highly correlated
66 ZNF320 1 28.9 Weakly correlated
67 ZNF337 1 43.0 Weakly correlated
68 ZNF440 1 28.9 Weakly correlated
69 ZNF468 1 28.9 Weakly correlated
70 ZNF471 1 94.0 Moderately correlated
71 ZNF641 1 99.0 Highly correlated
72 ZNF490 1 43.0 Weakly correlated
73 ZNF510 1 99.0 Highly correlated
74 ZNF141 1 43.0 Weakly correlated
75 ZNF549 1 87.0 Moderately correlated
76 ZNF568 1 99.0 Highly correlated
77 ZNF570 1 99.0 Highly correlated
78 ZNF585A 1 99.0 Highly correlated
79 ZNF607 1 43.0 Weakly correlated
80 ZNF140 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF133 46 99.0 Highly correlated
2 ZNF680 9 28.9 Weakly correlated
3 ZIM3 8 87.0 Moderately correlated
4 ZNF534 7 19.6 Weakly correlated
5 ZNF723 6 15.2 Weakly correlated
6 ZNF705B 5 28.9 Weakly correlated
7 ZNF485 5 94.0 Moderately correlated
8 ZNF317 5 99.0 Highly correlated
9 ZNF793 5 99.0 Highly correlated
10 ZNF479 4 6.4 Weakly correlated
11 ZNF92 4 28.9 Weakly correlated
12 ZNF382 3 99.0 Highly correlated
13 ZNF705D 3 28.9 Weakly correlated
14 ZNF766 2 43.0 Weakly correlated
15 ZNF197 2 99.0 Highly correlated
16 ZNF251 2 94.0 Moderately correlated
17 ZNF101 2 43.0 Weakly correlated
18 ZNF136 2 74.0 Weakly correlated
19 ZNF160 2 74.0 Weakly correlated
20 ZNF641 1 99.0 Highly correlated
21 ZNF248 1 99.0 Highly correlated
22 ZNF28 1 28.9 Weakly correlated
23 ZNF468 1 28.9 Weakly correlated
24 ZNF510 1 99.0 Highly correlated
25 ZNF528 1 43.0 Weakly correlated
26 ZNF33A 1 99.0 Highly correlated
27 ZNF597 1 94.0 Moderately correlated
28 ZFP28 1 99.0 Highly correlated
29 ZNF175 1 94.0 Moderately correlated
30 ZNF320 1 28.9 Weakly correlated
31 ZNF2 1 99.0 Highly correlated
32 ZNF263 1 180.0 Weakly correlated
33 ZNF75D 1 94.0 Moderately correlated
34 ZNF701 1 28.9 Weakly correlated
35 ZNF589 1 28.9 Weakly correlated
36 ZNF41 1 99.0 Highly correlated
37 ZNF287 1 99.0 Highly correlated
38 ZNF471 1 94.0 Moderately correlated
39 ZNF585B 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF133 99.0 Highly correlated
2 ZNF680 28.9 Weakly correlated
3 ZNF723 15.2 Weakly correlated