ZRdb KZFP & Repeats
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LINE_L1M7_5END

  • Name
    L1M7_5END
  • Repbase
    L1M7_5end
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000253
Description :

ORF1 from <699-1658. ORF2 starts at pos 2088.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gatgggacttccggtttgaanatggcggnataaagtcggcatttcccccttctcctcctggaaatcacccaaaagcaacaaggagaatgagaaacagaaacgcaaactccatcttcggtgaaactaggagacanctataaaccccgaaccacaaaatangtggaagggctgccaaaagcagcggagatcaagcagagctggatgcgggaagaagcagagagaggacgccgtggctgcagatctcagaaagagccagcaaagtacanttctccaaggtgaggggcacaccctgaggtgcaaaacctaaatcccttgtttgcaacagcgggaacagggtgcacgggctggcggcaggagcttccctggacccggtttggttccgagaagcagaggaggcggggctaaacgaggaatcacacagacaagccatatttgcaggaagcagtctgtctctgtggcagnggggaggagagagactttgcattgtgaacagccccgcagctgcctatctccgttggctggggagaagtaaaggctaaaaaactcacacacaaaaccctgngtcataaggaaaattcctgctagcctggaaacggccctggcccctcccccacacgaacctcctgcaaatagctggtccaggaaaaactcacctcattcaaagatgagtaatcaaaaaggaaccagcacaggatctatacaaagatactacaagaaaaaaggaggaaagaaacaggaaaaacaaatggcagatgaagaacactcaccagaaaaatgttgccacggagcagatgaaaattgtgaccaaatatttcgccatgaatttaaaaaaacttaatgaagcaattacctctatgaagnaagancacaaagcagagatacaagagctcagggaagagatggcgagacaacagaaggagatgaaatatgagctggcagagctcaggaaagaaatggaagagaaaaataaaaccatcacagaaatgaaggcgaaattggaagnagcacaagggagaatagacactgctgaaaacacagtaagggacatagaggacagaaatgagaaaagcgagcaaaatgaaatggaaatgaacaaagagtttaaaaggattagagagaaaatgatagatatagaagacaggcaaaggagatccaacatatgcataattggagtcccgaaggaaaaccaaaacaatggaacagaacaaatatttaaagatataattcaagaaaactttcctgaaataaaagaagacttgaatctacanattgaaagggcacaccgtgtnccaggaaaaattgacncagaacgatcaacaccgagacatatcctagtaaagttactggacttcaaagataaagaaagaatcctttgggcatccaggcaaaaagatcaagtcacctataaagggaaaaaaatcaggctggcctcagacttctccacagcaacattcaatgctagaagacagtggagcaacgcctacaaaatnctcaaggaaagaaagtgtgacccaagaattttatatccagccaaactgtcnttcaagtataaaggcacagaaaacattttgaacatgcaagaactcagggaatatngttcccatgagcccttcttgaagaaactactagaggacgaacttcagccaaccaagagatgaatggagaaactacggcaaaaggactggcggtgagcattgaatntatttaactgtagaactaagactaaaacaaatgtggggattanggtnacagaacagaatgtaaatgttatangccctgacaatgtagaaatgatacaactaaaaaatgggaggagagagggggaaaggagaaagtagaataagtncgctgatttcctcatctntaatagctgggagtcaaaagatatcatttaaagctgataaatcaagtaatagaagcataaataagnaaatanaggantaaaggcattatgaaaaagtataatacaaagataancactagaacaaaaatanaaaccttcctaaatatcagaagaaanaaaaataaagaaaacaaattacatgaaanatagaaaatacaagataaaaacanaacataaaataanatgacagaactaagaccaaacatatctgtcatatcaataaatgtaaatgggctaaactcacctattaaaagaaaaagattttcagattggatcacaaagcaaaacccaactntatgctgtatacaagagacacacctaaaacaaagtgatt
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 111 99.0 Highly correlated
2 ZNF133 77 99.0 Highly correlated
3 ZNF92 50 28.9 Weakly correlated
4 ZNF680 47 28.9 Weakly correlated
5 ZNF317 34 99.0 Highly correlated
6 ZNF766 30 43.0 Weakly correlated
7 ZIM3 28 87.0 Moderately correlated
8 ZNF394 27 99.0 Highly correlated
9 ZNF705B 22 28.9 Weakly correlated
10 ZNF569 21 99.0 Highly correlated
11 ZNF705D 19 28.9 Weakly correlated
12 ZFP37 17 99.0 Highly correlated
13 ZNF263 16 180.0 Weakly correlated
14 ZKSCAN1 15 160.0 Weakly correlated
15 ZNF565 15 99.0 Highly correlated
16 ZNF723 15 15.2 Weakly correlated
17 ZNF175 13 94.0 Moderately correlated
18 ZNF2 13 99.0 Highly correlated
19 ZNF486 13 8.6 Weakly correlated
20 ZFP28 12 99.0 Highly correlated
21 ZNF18 10 160.0 Weakly correlated
22 ZNF479 10 6.4 Weakly correlated
23 ZNF793 10 99.0 Highly correlated
24 ZNF182 9 99.0 Highly correlated
25 ZNF679 9 28.9 Weakly correlated
26 ZNF287 8 99.0 Highly correlated
27 ZNF583 8 99.0 Highly correlated
28 ZNF101 7 43.0 Weakly correlated
29 ZNF251 7 94.0 Moderately correlated
30 ZNF534 7 19.6 Weakly correlated
31 ZNF558 7 99.0 Highly correlated
32 ZNF610 7 28.9 Weakly correlated
33 ZFP69B 6 99.0 Highly correlated
34 ZNF585A 6 99.0 Highly correlated
35 ZNF585B 6 99.0 Highly correlated
36 ZNF197 5 99.0 Highly correlated
37 ZNF347 5 43.0 Weakly correlated
38 ZNF471 5 94.0 Moderately correlated
39 ZNF490 5 43.0 Weakly correlated
40 ZNF570 5 99.0 Highly correlated
41 ZNF589 5 28.9 Weakly correlated
42 ZNF677 5 99.0 Highly correlated
43 ZNF140 4 99.0 Highly correlated
44 ZNF257 4 0.0 Weakly correlated
45 ZNF274 4 99.0 Highly correlated
46 ZNF320 4 28.9 Weakly correlated
47 ZNF44 4 43.0 Weakly correlated
48 ZNF597 4 94.0 Moderately correlated
49 ZFP57 3 87.0 Moderately correlated
50 ZKSCAN8 3 160.0 Weakly correlated
51 ZNF202 3 160.0 Weakly correlated
52 ZNF429 3 28.9 Weakly correlated
53 ZNF441 3 43.0 Weakly correlated
54 ZNF584 3 99.0 Highly correlated
55 ZNF169 2 94.0 Moderately correlated
56 ZNF248 2 99.0 Highly correlated
57 ZNF264 2 99.0 Highly correlated
58 ZNF284 2 43.0 Weakly correlated
59 ZNF324 2 99.0 Highly correlated
60 ZNF334 2 99.0 Highly correlated
61 ZNF33A 2 99.0 Highly correlated
62 ZNF41 2 99.0 Highly correlated
63 ZNF425 2 94.0 Moderately correlated
64 ZNF485 2 94.0 Moderately correlated
65 ZNF519 2 19.6 Weakly correlated
66 ZNF701 2 28.9 Weakly correlated
67 ZNF786 2 99.0 Highly correlated
68 ZNF823 2 43.0 Weakly correlated
69 ZFP82 1 99.0 Highly correlated
70 ZKSCAN5 1 160.0 Weakly correlated
71 ZNF136 1 74.0 Weakly correlated
72 ZNF160 1 74.0 Weakly correlated
73 ZNF224 1 69.0 Weakly correlated
74 ZNF250 1 99.0 Highly correlated
75 ZNF253 1 19.6 Weakly correlated
76 ZNF26 1 99.0 Highly correlated
77 ZNF28 1 28.9 Weakly correlated
78 ZNF331 1 94.0 Moderately correlated
79 ZNF350 1 99.0 Highly correlated
80 ZNF354A 1 99.0 Highly correlated
81 ZNF354C 1 99.0 Highly correlated
82 ZNF445 1 99.0 Highly correlated
83 ZNF480 1 43.0 Weakly correlated
84 ZNF506 1 28.9 Weakly correlated
85 ZNF510 1 99.0 Highly correlated
86 ZNF528 1 43.0 Weakly correlated
87 ZNF544 1 0.0 Weakly correlated
88 ZNF547 1 74.0 Weakly correlated
89 ZNF586 1 43.0 Weakly correlated
90 ZNF675 1 8.6 Weakly correlated
91 ZNF707 1 74.0 Weakly correlated
92 ZNF730 1 19.6 Weakly correlated
93 ZNF75D 1 94.0 Moderately correlated
94 ZNF790 1 99.0 Highly correlated
95 ZNF792 1 94.0 Moderately correlated
96 ZNF808 1 19.6 Weakly correlated
97 ZNF84 1 99.0 Highly correlated
98 ZNF878 1 43.0 Weakly correlated
99 ZNF879 1 99.0 Highly correlated
100 ZNF8 1 99.0 Highly correlated
101 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF133 55 99.0 Highly correlated
2 ZNF680 20 28.9 Weakly correlated
3 ZIM3 17 87.0 Moderately correlated
4 ZNF565 13 99.0 Highly correlated
5 ZNF382 11 99.0 Highly correlated
6 ZNF723 7 15.2 Weakly correlated
7 ZNF705D 6 28.9 Weakly correlated
8 ZNF705B 6 28.9 Weakly correlated
9 ZNF534 4 19.6 Weakly correlated
10 ZNF585A 4 99.0 Highly correlated
11 ZNF287 4 99.0 Highly correlated
12 ZFP28 4 99.0 Highly correlated
13 ZNF101 4 43.0 Weakly correlated
14 ZNF2 3 99.0 Highly correlated
15 ZNF677 3 99.0 Highly correlated
16 ZNF479 3 6.4 Weakly correlated
17 ZNF263 3 180.0 Weakly correlated
18 ZNF44 3 43.0 Weakly correlated
19 ZNF558 3 99.0 Highly correlated
20 ZNF317 2 99.0 Highly correlated
21 ZNF175 2 94.0 Moderately correlated
22 ZNF248 2 99.0 Highly correlated
23 ZNF766 2 43.0 Weakly correlated
24 ZNF485 2 94.0 Moderately correlated
25 ZNF471 2 94.0 Moderately correlated
26 ZNF264 2 99.0 Highly correlated
27 ZFP57 2 87.0 Moderately correlated
28 ZNF793 2 99.0 Highly correlated
29 ZNF140 2 99.0 Highly correlated
30 ZNF679 2 28.9 Weakly correlated
31 ZNF347 2 43.0 Weakly correlated
32 ZNF490 2 43.0 Weakly correlated
33 ZNF879 1 99.0 Highly correlated
34 ZKSCAN1 1 160.0 Weakly correlated
35 ZNF136 1 74.0 Weakly correlated
36 ZNF160 1 74.0 Weakly correlated
37 ZNF8 1 99.0 Highly correlated
38 ZNF169 1 94.0 Moderately correlated
39 ZNF354A 1 99.0 Highly correlated
40 ZNF251 1 94.0 Moderately correlated
41 ZNF597 1 94.0 Moderately correlated
42 ZNF528 1 43.0 Weakly correlated
43 ZNF506 1 28.9 Weakly correlated
44 ZNF33A 1 99.0 Highly correlated
45 ZNF202 1 160.0 Weakly correlated
46 ZNF585B 1 99.0 Highly correlated
47 ZNF92 1 28.9 Weakly correlated
48 ZNF197 1 99.0 Highly correlated
49 ZNF331 1 94.0 Moderately correlated
50 ZNF250 1 99.0 Highly correlated
51 ZNF610 1 28.9 Weakly correlated
52 ZNF589 1 28.9 Weakly correlated
53 ZNF320 1 28.9 Weakly correlated
54 ZNF584 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF133 99.0 Highly correlated
2 ZNF382 99.0 Highly correlated
3 ZNF565 99.0 Highly correlated
4 ZNF680 28.9 Weakly correlated