ZRdb KZFP & Repeats
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LINE_L1M6_5END

  • Name
    L1M6_5END
  • Repbase
    L1M6_5end
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000251
Description :

gag ORF from ~1103-1852
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
aacttccggtttaaaatggcatctggctagcagcccctgatgcagcctctcccaacttcccactaaaatacctatgaagacacagaaaaagacgaaaactcacaacaacactgaaaactaagactgacagncaacctattgccagaatctgggaggaatttccactaactacaaggccgatggaactggattgagaaaaancaatcaggtcagcccatggccaccttgcttcatgaaacagaacgaaccctgcgcctgaaagaagataggaagacgcttcgtccctcccccactgtctgtcccctggctcagagacncagggtctgtaccaaccagaaaactgggcagccgtccctctactgcacgggtgctgctttttgaggcagccagagtgctgtccccatccctcccacatctttctacatccattcagagactgcaactcccagaaaacaacngggcaggaaganggggggggactggcgtggtggcacattgcatcctgggaggtgtagtccccacaagtaaagcgctgtaggtgggggcaagagacaggaagagccctggtagcagtgcatgctggggattgtagtttttcatgtactccatcggttcagagtgtcagagaaccaggcagtgggggtaggagaagatcccacctcagtccagcagagccgcactagatgaangcctgctagacactgggaattgggctaggagctgtgcacatcaacctgccctccagctgtagatctgagaaggggattcgaccagcacccaagtggacagtgagtagggccaagggcaatccacacaccctgtctgttggcaaacaccgggtctggatagatctctcctcgttcgaggatgagtaaacagaaaaaaaancaacatggggcctatgaaaaatactgcagaacaagggaaagggaacatcatcctgaagactcagaggaagagcatacctctgaaaatgatttactacaggaaccagaagaaaattttagaaaactgtttggcatcctcaataggatgcaagaagacatggcctctatgaaacaggaacagagaaagcgaataaaataaaaagcaatgaggatgaaaaaanacaaatgagatgaaaagagaagatgaaannaggaaagantgcaaggaaactaaaaatgcaatagcagaattaaaatccgcattggaggcagtaaagagcagaattgacactgcagaaaatcgaatcagtgatgtggaggacaaacttgagaagctctcccagaatgcagaggaaaaggacaaagagatgaaaatgagagagaaaatgatagatatggaggacagagaacggagatccaacctangaatnataggtgttcctgaggaagaaaccagaacaantggaacagaagcaataatcaaagacataattgaagaaaactttcctgagctgaaaaaagacctgagtntgcagattgaaagggctcaccgtattccaggcaaaatnaatgaaaagagacccacatctagacatatcctggcaaaatttttgaattncaaggataaagaaaaaatcctacaagcatccaggcagaaaaaacaggttacctacaaaggaataaaaatcaggctggcctcagacttctctgcaacactaaatgccagaagacaatggagcaacgtctacagagttttgaggggaaaaggttgtgacccaagaattttatacccagccaagttgtcnttcatgtgtgaaggcaacagaaagacattctcagatatgcaagggctcagaaaatataccacccatgtacccttcttgaaaaaattacttgaagatatactccagccgactgagagatgaatcaaaattaagaactcaagaatggggaagtcatggtataaaaggctggcagtgagcactgaaaccagttaaacatagagttaagtctaaataattgttgtaaatatggttacaaaactgaatgcaaatgtcaaaaataattcttgaangagaagatatataatataaaanataatntaataactggatctaaaatcccagattatattaacaaagaccaggaagtgagtgggaggaaatnagggagaaaataaagtatgctaaattcctcatcttanataggggggantcaaaagatactatttcattcttgactttgataattagagaaatataggttaaagaatgtttttgaaaaacttaaaggtaaccactagtagaatttaaaaaacagaatgtataccttccaaancactggagaagataaaanaaaacaaaatataanccatatagcaaanaagagaaaacaaangaaannacaagaagcatntaaaaataaaagcanaaagnaagatgacaaanataagaccaaacatatcagttatgacaataaatgtaaatgggttaaactcccctattaaaagacaaagactctcagattgggttaaaaaacaaaatccaactatatgctgtttacaagagacacacctaaataaaagatac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 124 99.0 Highly correlated
2 ZIM3 69 87.0 Moderately correlated
3 ZNF766 55 43.0 Weakly correlated
4 ZNF680 35 28.9 Weakly correlated
5 ZNF263 31 180.0 Weakly correlated
6 ZNF394 31 99.0 Highly correlated
7 ZNF317 29 99.0 Highly correlated
8 ZNF723 26 15.2 Weakly correlated
9 ZNF679 22 28.9 Weakly correlated
10 ZNF101 21 43.0 Weakly correlated
11 ZNF589 20 28.9 Weakly correlated
12 ZFP37 19 99.0 Highly correlated
13 ZKSCAN1 18 160.0 Weakly correlated
14 ZNF197 17 99.0 Highly correlated
15 ZNF175 16 94.0 Moderately correlated
16 ZNF2 15 99.0 Highly correlated
17 ZNF583 15 99.0 Highly correlated
18 ZNF534 14 19.6 Weakly correlated
19 ZNF705B 14 28.9 Weakly correlated
20 ZNF133 13 99.0 Highly correlated
21 ZNF324 13 99.0 Highly correlated
22 ZNF705D 13 28.9 Weakly correlated
23 ZNF92 12 28.9 Weakly correlated
24 ZKSCAN8 11 160.0 Weakly correlated
25 ZNF18 11 160.0 Weakly correlated
26 ZNF75D 11 94.0 Moderately correlated
27 ZNF182 10 99.0 Highly correlated
28 ZFP69B 9 99.0 Highly correlated
29 ZNF251 9 94.0 Moderately correlated
30 ZNF287 9 99.0 Highly correlated
31 ZNF584 9 99.0 Highly correlated
32 ZNF140 8 99.0 Highly correlated
33 ZNF479 8 6.4 Weakly correlated
34 ZNF485 8 94.0 Moderately correlated
35 ZNF486 8 8.6 Weakly correlated
36 ZNF610 8 28.9 Weakly correlated
37 ZNF490 7 43.0 Weakly correlated
38 ZNF701 7 28.9 Weakly correlated
39 ZNF793 7 99.0 Highly correlated
40 ZFP28 6 99.0 Highly correlated
41 ZNF136 6 74.0 Weakly correlated
42 ZNF257 6 0.0 Weakly correlated
43 ZNF558 6 99.0 Highly correlated
44 ZNF585A 6 99.0 Highly correlated
45 ZNF320 5 28.9 Weakly correlated
46 ZNF441 5 43.0 Weakly correlated
47 ZNF528 5 43.0 Weakly correlated
48 ZNF597 5 94.0 Moderately correlated
49 ZNF84 5 99.0 Highly correlated
50 ZFP57 4 87.0 Moderately correlated
51 ZNF28 4 28.9 Weakly correlated
52 ZNF334 4 99.0 Highly correlated
53 ZNF34 4 99.0 Highly correlated
54 ZNF425 4 94.0 Moderately correlated
55 ZNF554 4 99.0 Highly correlated
56 ZNF735 4 28.9 Weakly correlated
57 ZNF823 4 43.0 Weakly correlated
58 ZFP69 3 99.0 Highly correlated
59 ZNF283 3 99.0 Highly correlated
60 ZNF284 3 43.0 Weakly correlated
61 ZNF468 3 28.9 Weakly correlated
62 ZNF510 3 99.0 Highly correlated
63 ZNF585B 3 99.0 Highly correlated
64 ZNF641 3 99.0 Highly correlated
65 ZNF677 3 99.0 Highly correlated
66 ZNF695 3 28.9 Weakly correlated
67 ZNF707 3 74.0 Weakly correlated
68 ZFP30 2 99.0 Highly correlated
69 ZNF248 2 99.0 Highly correlated
70 ZNF264 2 99.0 Highly correlated
71 ZNF26 2 99.0 Highly correlated
72 ZNF331 2 94.0 Moderately correlated
73 ZNF354A 2 99.0 Highly correlated
74 ZNF454 2 99.0 Highly correlated
75 ZNF471 2 94.0 Moderately correlated
76 ZNF563 2 28.9 Weakly correlated
77 ZNF568 2 99.0 Highly correlated
78 ZNF569 2 99.0 Highly correlated
79 ZNF570 2 99.0 Highly correlated
80 ZNF700 2 28.9 Weakly correlated
81 ZNF75A 2 94.0 Moderately correlated
82 ZNF878 2 43.0 Weakly correlated
83 ZKSCAN5 1 160.0 Weakly correlated
84 ZNF135 1 94.0 Moderately correlated
85 ZNF157 1 99.0 Highly correlated
86 ZNF222 1 43.0 Weakly correlated
87 ZNF224 1 69.0 Weakly correlated
88 ZNF274 1 99.0 Highly correlated
89 ZNF433 1 43.0 Weakly correlated
90 ZNF440 1 28.9 Weakly correlated
91 ZNF519 1 19.6 Weakly correlated
92 ZNF557 1 15.2 Weakly correlated
93 ZNF605 1 99.0 Highly correlated
94 ZNF614 1 99.0 Highly correlated
95 ZNF671 1 94.0 Moderately correlated
96 ZNF674 1 99.0 Highly correlated
97 ZNF778 1 74.0 Weakly correlated
98 ZNF780A 1 43.0 Weakly correlated
99 ZNF7 1 99.0 Highly correlated
100 ZNF808 1 19.6 Weakly correlated
101 ZNF85 1 28.9 Weakly correlated
102 ZNF8 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 30 87.0 Moderately correlated
2 ZNF723 13 15.2 Weakly correlated
3 ZNF534 11 19.6 Weakly correlated
4 ZNF680 9 28.9 Weakly correlated
5 ZNF287 7 99.0 Highly correlated
6 ZNF133 7 99.0 Highly correlated
7 ZNF490 6 43.0 Weakly correlated
8 ZNF75D 6 94.0 Moderately correlated
9 ZNF382 5 99.0 Highly correlated
10 ZNF766 5 43.0 Weakly correlated
11 ZNF101 5 43.0 Weakly correlated
12 ZNF263 4 180.0 Weakly correlated
13 ZNF84 4 99.0 Highly correlated
14 ZNF585A 4 99.0 Highly correlated
15 ZNF34 4 99.0 Highly correlated
16 ZNF479 4 6.4 Weakly correlated
17 ZNF677 3 99.0 Highly correlated
18 ZNF735 3 28.9 Weakly correlated
19 ZNF793 3 99.0 Highly correlated
20 ZNF136 3 74.0 Weakly correlated
21 ZFP28 2 99.0 Highly correlated
22 ZNF257 2 0.0 Weakly correlated
23 ZNF354A 2 99.0 Highly correlated
24 ZNF140 2 99.0 Highly correlated
25 ZNF585B 2 99.0 Highly correlated
26 ZNF528 2 43.0 Weakly correlated
27 ZNF248 2 99.0 Highly correlated
28 ZNF705D 2 28.9 Weakly correlated
29 ZNF695 2 28.9 Weakly correlated
30 ZFP69 2 99.0 Highly correlated
31 ZNF264 2 99.0 Highly correlated
32 ZNF317 2 99.0 Highly correlated
33 ZNF471 1 94.0 Moderately correlated
34 ZNF671 1 94.0 Moderately correlated
35 ZKSCAN5 1 160.0 Weakly correlated
36 ZNF823 1 43.0 Weakly correlated
37 ZFP57 1 87.0 Moderately correlated
38 ZNF583 1 99.0 Highly correlated
39 ZNF175 1 94.0 Moderately correlated
40 ZNF92 1 28.9 Weakly correlated
41 ZKSCAN8 1 160.0 Weakly correlated
42 ZNF485 1 94.0 Moderately correlated
43 ZNF324 1 99.0 Highly correlated
44 ZNF251 1 94.0 Moderately correlated
45 ZNF679 1 28.9 Weakly correlated
46 ZNF75A 1 94.0 Moderately correlated
47 ZNF433 1 43.0 Weakly correlated
48 ZNF468 1 28.9 Weakly correlated
49 ZNF197 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF490 43.0 Weakly correlated
2 ZNF680 28.9 Weakly correlated
3 ZNF723 15.2 Weakly correlated
4 ZNF75D 94.0 Moderately correlated