ZRdb KZFP & Repeats
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LINE_L1M6B_5END

  • Name
    L1M6B_5END
  • Repbase
    L1M6B_5end
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000252
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttgaaaagaagcgggtggacttccggttcaagatggcganctgagcacacgcgtttaactcccctccctcccaaaatcccactgaaatgaccaaaggaatataaaaataggggaaaatctgcatcagcgctggaaactagggaagggtgccatccacatgccagaaactttgaggaatttctgcaagatatagngcagatgggaccagattgaaggaaggaccgancagcagacgaatcaccgcatgtgaaggaaaagcccgccggaggaacgaggaaaagactccagccgnccccgnagaaccccggaaaaactcnaggctcagaggccgcagangctgggagtgggagtgngncgtggga
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 17 99.0 Highly correlated
2 ZNF394 11 99.0 Highly correlated
3 ZIM3 9 87.0 Moderately correlated
4 ZNF2 8 99.0 Highly correlated
5 ZNF558 7 99.0 Highly correlated
6 ZNF317 7 99.0 Highly correlated
7 ZNF324 6 99.0 Highly correlated
8 ZNF766 6 43.0 Weakly correlated
9 ZFP37 5 99.0 Highly correlated
10 ZFP69B 5 99.0 Highly correlated
11 ZNF263 5 180.0 Weakly correlated
12 ZFP28 4 99.0 Highly correlated
13 ZNF680 4 28.9 Weakly correlated
14 ZNF793 4 99.0 Highly correlated
15 ZNF101 4 43.0 Weakly correlated
16 ZNF18 3 160.0 Weakly correlated
17 ZNF597 3 94.0 Moderately correlated
18 ZNF679 3 28.9 Weakly correlated
19 ZNF589 3 28.9 Weakly correlated
20 ZKSCAN1 3 160.0 Weakly correlated
21 ZNF534 3 19.6 Weakly correlated
22 ZNF485 3 94.0 Moderately correlated
23 ZNF257 2 0.0 Weakly correlated
24 ZNF674 2 99.0 Highly correlated
25 ZNF584 2 99.0 Highly correlated
26 ZNF700 2 28.9 Weakly correlated
27 ZNF701 2 28.9 Weakly correlated
28 ZNF490 2 43.0 Weakly correlated
29 ZNF479 2 6.4 Weakly correlated
30 ZNF723 2 15.2 Weakly correlated
31 ZNF334 2 99.0 Highly correlated
32 ZNF133 2 99.0 Highly correlated
33 ZNF169 2 94.0 Moderately correlated
34 ZNF75D 2 94.0 Moderately correlated
35 ZNF175 2 94.0 Moderately correlated
36 ZNF197 2 99.0 Highly correlated
37 ZNF705B 1 28.9 Weakly correlated
38 ZNF705D 1 28.9 Weakly correlated
39 RBAK 1 99.0 Highly correlated
40 ZNF736 1 43.0 Weakly correlated
41 ZNF823 1 43.0 Weakly correlated
42 ZNF92 1 28.9 Weakly correlated
43 ZNF596 1 94.0 Moderately correlated
44 ZNF585A 1 99.0 Highly correlated
45 ZNF554 1 99.0 Highly correlated
46 ZNF528 1 43.0 Weakly correlated
47 ZNF471 1 94.0 Moderately correlated
48 ZNF441 1 43.0 Weakly correlated
49 ZNF440 1 28.9 Weakly correlated
50 ZNF350 1 99.0 Highly correlated
51 ZNF28 1 28.9 Weakly correlated
52 ZNF274 1 99.0 Highly correlated
53 ZNF224 1 69.0 Weakly correlated
54 ZNF140 1 99.0 Highly correlated
55 ZNF12 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 4 87.0 Moderately correlated
2 ZNF558 2 99.0 Highly correlated
3 ZNF485 2 94.0 Moderately correlated
4 ZFP28 2 99.0 Highly correlated
5 ZNF350 1 99.0 Highly correlated
6 ZNF823 1 43.0 Weakly correlated
7 ZNF674 1 99.0 Highly correlated
8 ZNF723 1 15.2 Weakly correlated
9 ZNF479 1 6.4 Weakly correlated
10 ZNF133 1 99.0 Highly correlated
11 ZNF597 1 94.0 Moderately correlated
12 ZNF596 1 94.0 Moderately correlated
13 ZNF75D 1 94.0 Moderately correlated
14 ZNF382 1 99.0 Highly correlated
15 ZNF197 1 99.0 Highly correlated
16 ZNF140 1 99.0 Highly correlated
17 ZNF793 1 99.0 Highly correlated
18 ZNF175 1 94.0 Moderately correlated
19 ZNF101 1 43.0 Weakly correlated
20 ZFP37 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats