ZRdb KZFP & Repeats
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LINE_L1M5_ORF2

  • Name
    L1M5_ORF2
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000008
Description :

Present in eutherians.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
atggtagatttaaacccaancatatcaataattacattaaatgtaaatggnctaaacactccaattaaaaggcagagattgtcagactggataaaaaaacaagacccaactatatgctgtctacaagagacgcactttaaatataaagacacaganaggttgaaagtaaaaggatggaaaaagatataccatgcaaacactaancaaaagaaagctggngtggctatattaatatcagacaaagtagacttcaaggcaagaaatattaccagagataaagagggacatttcataatgataaaagggtcaattcatcaagaagacataacaatcctaaatgtgtatgcacctaataacagagcttcaaaatacatgaagcaaaaactgacagaactaaaaggagaaatagacaaatccacaattatagtnggagattttaacacncctctctcagtaattgatagaacaagtagacaaaaaatcagtaaggatatagaagatttgaacaacactatcaaccaacttgacctaattgacatttatagaacactncacccaacaacngcagaatacacattcttttcaagtgcacatggaacatttaccaagatagaccatatnctgggccataaaacaagtctcaataaatttnaaaggattgaaatcatacagagtatgttctctgaccacaatggaattaaattagaaatcaataacaaaaagatanctagaaaatccccaaatatttggaaattaaacaacacacttctaaataacccatgggtcaaagaagaaatcacaanggaaattagaaaatattttgaactgaatganaatgaaaatacaacatatcaaaatttgtgggatgcagctaaagcagtgcttagagggaaatttatagcnttaaatgcntatattagaaaagaagaaaggcttaaaatcaatgatctaagcttccaccttaagaagctagaaaaagaagagcaaattaaacccaaagnaagtagaaggaaggaaataataaagataagagcagaaatcaatgaaatagaaaacaaananacaatagagaaaatcaacgaagccaaaagctggttctttgaaaagatcaataaaattgataaacctctagcnagactgatcaagaaaaaaagagagaagacacaaattaccaatatcaggaatgaaaaaggagacatcactacagatcctacagacattaaaaggataataagagaatattatgaacaactttatgccaataaatttganaacttagatgaaatggacaaattccttgaaaaacacaanttaccaaaactgacncaagaagaaatagaaaatctgaatagccctatatctattaaagaaattgaatttgtaattaaaaaccttcccacaaagaaaactccaggcccagatggcttcactggtgaattctaccaaacatttaaggaagaaataataccaatcttacacaaactcttccagaaaatagaaaaagagggaacacttcccaactcattttatgaggccagcatnaccctgataccaaaaccngacaaagacattacaagaaaagaaaattacagaccaatatccctcatgaacatagatgcaaaaatcctnaacaaaatattagcaaatcgaatccagcaatatataaaaaggataatacatcatgaccaagtggggtttatcccaggaatgcaaggttggtttaacattcgaaaatcaatcaatgtaattcaccatattaacagaataaaggagaaaaatcatatgatcatctcaatagatgcagaaaaagcatttgacaaaattcaacacccattcatgataaaaactctcagcaaactaggaatagaagggaacttcctcaacctgataaagggcatctacgaaaaacctacagcnaacatcatacttaatggtgaaanactgaangctttccccctaagatcgggaacaagacaaggatgtccgctntcaccacttctattcaacattgtactggaggtcctagccagtgcaataaggcaagaaaaagaaataaaaggcataaagattggaaaggaagaaataaaactgtcnttattcgcagatgacatgattgtntacgtagaaaatccnaaagaatctacaaanaaactactagaactaataagtgaatttagcaaggtcgcnggatacaaggtcaatatacaaaaatcaattgtatttctatatactagcaacaaacaattggaaaatgaaatttnaaaaacaataccatttacaatagcatcaaaaaacatnaaatacttaggaataaatctaacaaaanatgtgcaagacctntacactgaaaactacaaaacattgctgagagaaattaaagaagacctaaataaatggagagatataccatgttcatggattggaagactcaatattgtnaagatgtcaattctccccaaattgatctatagattcaatgcaatcccaatcaaaatcccagcaggtttttttgtagaaattgacaagctgattctaaaatttatatggaaatgcaaaggaccnagaatagccaaaacaatcttgaaaaagaagaacaaagttggaggacttacactaccngatntcaagacttattataaagctacagtaatcaagacagtgtggtattggcgtaaggatagacaaatagatcaatggaacagaatagagagtccagaaatagacccacacatatatggncanttgatttttgacaaaggtgccaangcaattcagtggggaaaggatagtcttttcaacaaatggtgctggaacaattggatatccatatggaaaaaaatgaanctcgacccctacctcacaccatacacaaaaattaattcnagatggatcatagacctaaatgtaaaagntaaaactataaaacttctagaagaaaacataggagaatatcttcgtgaccttgggntaggcaaagatttcttaaacaggacacaaaaagcacnaaccataaaagaaaaaattgataaattggactncatcaaaattaaaaacttctgctcntcaaaagacaccgttaagaaaatgaaaaggcaagccacagantgggagaaaatatttgcaanacatatatctgacaaaggactcgtatccagaatatataaagaactcctacaantcaataanaaaaagacaaacaacccaatanaaaaatgggcaaaagacttgaacagacacttcacaaaagaagatatncaaatggccaataagcacatgaaaagatgctcaacntca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 2446 99.0 Highly correlated
2 ZNF394 434 99.0 Highly correlated
3 ZIM3 411 87.0 Moderately correlated
4 ZFP28 394 99.0 Highly correlated
5 ZNF766 355 43.0 Weakly correlated
6 ZNF680 308 28.9 Weakly correlated
7 ZNF317 274 99.0 Highly correlated
8 ZNF248 239 99.0 Highly correlated
9 ZFP37 219 99.0 Highly correlated
10 ZNF263 204 180.0 Weakly correlated
11 ZNF2 192 99.0 Highly correlated
12 ZNF18 190 160.0 Weakly correlated
13 ZNF705B 175 28.9 Weakly correlated
14 ZNF723 163 15.2 Weakly correlated
15 ZNF101 162 43.0 Weakly correlated
16 ZNF92 156 28.9 Weakly correlated
17 ZNF84 139 99.0 Highly correlated
18 ZNF324 125 99.0 Highly correlated
19 ZNF705D 122 28.9 Weakly correlated
20 ZNF558 121 99.0 Highly correlated
21 ZFP69B 113 99.0 Highly correlated
22 ZKSCAN1 112 160.0 Weakly correlated
23 ZNF589 112 28.9 Weakly correlated
24 ZNF679 106 28.9 Weakly correlated
25 ZNF140 103 99.0 Highly correlated
26 ZNF175 103 94.0 Moderately correlated
27 ZNF10 92 99.0 Highly correlated
28 ZNF182 92 99.0 Highly correlated
29 ZNF251 92 94.0 Moderately correlated
30 ZNF534 86 19.6 Weakly correlated
31 ZNF554 79 99.0 Highly correlated
32 ZNF610 79 28.9 Weakly correlated
33 ZFP69 72 99.0 Highly correlated
34 ZNF486 59 8.6 Weakly correlated
35 ZNF584 59 99.0 Highly correlated
36 ZKSCAN8 57 160.0 Weakly correlated
37 ZNF257 55 0.0 Weakly correlated
38 ZFP57 53 87.0 Moderately correlated
39 ZNF479 53 6.4 Weakly correlated
40 ZNF701 53 28.9 Weakly correlated
41 ZNF197 50 99.0 Highly correlated
42 ZNF133 47 99.0 Highly correlated
43 ZNF274 44 99.0 Highly correlated
44 ZNF75D 44 94.0 Moderately correlated
45 ZNF441 42 43.0 Weakly correlated
46 ZNF506 42 28.9 Weakly correlated
47 ZNF585A 41 99.0 Highly correlated
48 ZNF583 38 99.0 Highly correlated
49 ZNF485 37 94.0 Moderately correlated
50 ZNF81 37 99.0 Highly correlated
51 ZFP90 36 99.0 Highly correlated
52 ZNF490 35 43.0 Weakly correlated
53 ZNF528 35 43.0 Weakly correlated
54 ZNF793 35 99.0 Highly correlated
55 ZNF320 34 28.9 Weakly correlated
56 ZNF8 34 99.0 Highly correlated
57 ZNF202 33 160.0 Weakly correlated
58 ZNF597 32 94.0 Moderately correlated
59 ZNF585B 29 99.0 Highly correlated
60 ZNF879 29 99.0 Highly correlated
61 ZNF778 27 74.0 Weakly correlated
62 ZNF264 26 99.0 Highly correlated
63 ZNF26 24 99.0 Highly correlated
64 ZNF287 24 99.0 Highly correlated
65 ZNF792 24 94.0 Moderately correlated
66 ZNF331 23 94.0 Moderately correlated
67 ZNF454 22 99.0 Highly correlated
68 ZNF547 21 74.0 Weakly correlated
69 ZNF429 20 28.9 Weakly correlated
70 ZNF677 20 99.0 Highly correlated
71 ZNF735 20 28.9 Weakly correlated
72 ZNF823 20 43.0 Weakly correlated
73 ZNF28 19 28.9 Weakly correlated
74 ZNF549 18 87.0 Moderately correlated
75 ZNF284 17 43.0 Weakly correlated
76 ZNF519 16 19.6 Weakly correlated
77 ZNF671 16 94.0 Moderately correlated
78 ZNF695 16 28.9 Weakly correlated
79 ZNF184 15 99.0 Highly correlated
80 ZNF471 15 94.0 Moderately correlated
81 ZNF425 14 94.0 Moderately correlated
82 ZNF682 14 28.9 Weakly correlated
83 ZNF141 13 43.0 Weakly correlated
84 ZNF160 13 74.0 Weakly correlated
85 ZNF169 13 94.0 Moderately correlated
86 ZNF707 13 74.0 Weakly correlated
87 ZFP14 12 99.0 Highly correlated
88 ZNF354A 11 99.0 Highly correlated
89 ZNF74 11 99.0 Highly correlated
90 ZNF816 11 28.9 Weakly correlated
91 ZNF250 10 99.0 Highly correlated
92 ZNF350 10 99.0 Highly correlated
93 ZNF786 10 99.0 Highly correlated
94 ZNF567 9 99.0 Highly correlated
95 ZNF41 8 99.0 Highly correlated
96 ZNF468 8 28.9 Weakly correlated
97 ZNF75A 8 94.0 Moderately correlated
98 ZNF7 8 99.0 Highly correlated
99 ZNF282 7 319.0 Weakly correlated
100 ZNF30 7 94.0 Moderately correlated
101 ZNF44 7 43.0 Weakly correlated
102 ZNF641 7 99.0 Highly correlated
103 ZNF730 7 19.6 Weakly correlated
104 ZNF91 7 6.0 Weakly correlated
105 ZKSCAN5 6 160.0 Weakly correlated
106 ZNF347 6 43.0 Weakly correlated
107 ZNF440 6 28.9 Weakly correlated
108 ZNF445 6 99.0 Highly correlated
109 ZNF563 6 28.9 Weakly correlated
110 ZFP30 5 99.0 Highly correlated
111 ZNF100 5 28.9 Weakly correlated
112 ZNF135 5 94.0 Moderately correlated
113 ZNF17 5 69.0 Weakly correlated
114 ZNF189 5 99.0 Highly correlated
115 ZNF224 5 69.0 Weakly correlated
116 ZNF273 5 28.9 Weakly correlated
117 ZNF436 5 180.0 Weakly correlated
118 ZNF799 5 43.0 Weakly correlated
119 ZNF878 5 43.0 Weakly correlated
120 ZNF214 4 99.0 Highly correlated
121 ZNF283 4 99.0 Highly correlated
122 ZNF304 4 99.0 Highly correlated
123 ZNF337 4 43.0 Weakly correlated
124 ZNF568 4 99.0 Highly correlated
125 ZNF573 4 94.0 Moderately correlated
126 ZNF611 4 19.6 Weakly correlated
127 ZNF136 3 74.0 Weakly correlated
128 ZNF33A 3 99.0 Highly correlated
129 ZNF417 3 28.9 Weakly correlated
130 ZNF418 3 43.0 Weakly correlated
131 ZNF43 3 43.0 Weakly correlated
132 ZNF559 3 74.0 Weakly correlated
133 ZNF560 3 43.0 Weakly correlated
134 ZNF569 3 99.0 Highly correlated
135 ZNF630 3 94.0 Moderately correlated
136 ZNF674 3 99.0 Highly correlated
137 ZNF689 3 99.0 Highly correlated
138 ZNF716 3 19.6 Weakly correlated
139 ZNF780A 3 43.0 Weakly correlated
140 ZNF808 3 19.6 Weakly correlated
141 ZNF93 3 8.6 Weakly correlated
142 ZKSCAN2 2 180.0 Weakly correlated
143 ZNF124 2 43.0 Weakly correlated
144 ZNF211 2 94.0 Moderately correlated
145 ZNF222 2 43.0 Weakly correlated
146 ZNF225 2 74.0 Weakly correlated
147 ZNF334 2 99.0 Highly correlated
148 ZNF432 2 99.0 Highly correlated
149 ZNF483 2 99.0 Highly correlated
150 ZNF510 2 99.0 Highly correlated
151 ZNF570 2 99.0 Highly correlated
152 ZNF578 2 15.2 Weakly correlated
153 ZNF586 2 43.0 Weakly correlated
154 ZNF587 2 28.9 Weakly correlated
155 ZNF614 2 99.0 Highly correlated
156 ZNF616 2 43.0 Weakly correlated
157 ZNF627 2 74.0 Weakly correlated
158 ZNF649 2 28.9 Weakly correlated
159 ZNF669 2 43.0 Weakly correlated
160 ZNF700 2 28.9 Weakly correlated
161 ZNF705E 2 0.0 Weakly correlated
162 ZNF736 2 43.0 Weakly correlated
163 ZNF765 2 8.6 Weakly correlated
164 ZNF845 2 28.9 Weakly correlated
165 ZNF85 2 28.9 Weakly correlated
166 PRDM9 1 0.0 Weakly correlated
167 ZFP82 1 99.0 Highly correlated
168 ZIK1 1 87.0 Moderately correlated
169 ZNF12 1 99.0 Highly correlated
170 ZNF226 1 99.0 Highly correlated
171 ZNF230 1 28.9 Weakly correlated
172 ZNF254 1 43.0 Weakly correlated
173 ZNF333 1 99.0 Highly correlated
174 ZNF354C 1 99.0 Highly correlated
175 ZNF383 1 99.0 Highly correlated
176 ZNF460 1 74.0 Weakly correlated
177 ZNF470 1 99.0 Highly correlated
178 ZNF480 1 43.0 Weakly correlated
179 ZNF548 1 94.0 Moderately correlated
180 ZNF555 1 94.0 Moderately correlated
181 ZNF557 1 15.2 Weakly correlated
182 ZNF561 1 43.0 Weakly correlated
183 ZNF571 1 99.0 Highly correlated
184 ZNF607 1 43.0 Weakly correlated
185 ZNF665 1 28.9 Weakly correlated
186 ZNF675 1 8.6 Weakly correlated
187 ZNF681 1 28.9 Weakly correlated
188 ZNF749 1 28.9 Weakly correlated
189 ZNF761 1 19.6 Weakly correlated
190 ZNF777 1 319.0 Weakly correlated
191 ZNF789 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 308 99.0 Highly correlated
2 ZIM3 195 87.0 Moderately correlated
3 ZNF248 185 99.0 Highly correlated
4 ZFP28 178 99.0 Highly correlated
5 ZNF84 113 99.0 Highly correlated
6 ZNF101 84 43.0 Weakly correlated
7 ZNF10 84 99.0 Highly correlated
8 ZNF723 84 15.2 Weakly correlated
9 ZNF680 70 28.9 Weakly correlated
10 ZFP69 62 99.0 Highly correlated
11 ZNF766 43 43.0 Weakly correlated
12 ZNF92 37 28.9 Weakly correlated
13 ZNF81 36 99.0 Highly correlated
14 ZNF705B 33 28.9 Weakly correlated
15 ZNF534 33 19.6 Weakly correlated
16 ZFP90 31 99.0 Highly correlated
17 ZNF324 31 99.0 Highly correlated
18 ZNF140 30 99.0 Highly correlated
19 ZNF705D 26 28.9 Weakly correlated
20 ZNF317 26 99.0 Highly correlated
21 ZNF133 23 99.0 Highly correlated
22 ZNF585A 20 99.0 Highly correlated
23 ZNF485 17 94.0 Moderately correlated
24 ZNF558 16 99.0 Highly correlated
25 ZNF263 15 180.0 Weakly correlated
26 ZNF75D 15 94.0 Moderately correlated
27 ZFP57 14 87.0 Moderately correlated
28 ZNF677 13 99.0 Highly correlated
29 ZNF18 13 160.0 Weakly correlated
30 ZNF879 13 99.0 Highly correlated
31 ZNF202 12 160.0 Weakly correlated
32 ZNF287 12 99.0 Highly correlated
33 ZNF264 12 99.0 Highly correlated
34 ZNF701 12 28.9 Weakly correlated
35 ZFP14 11 99.0 Highly correlated
36 ZNF74 11 99.0 Highly correlated
37 ZNF490 11 43.0 Weakly correlated
38 ZNF792 11 94.0 Moderately correlated
39 ZNF8 11 99.0 Highly correlated
40 ZNF735 10 28.9 Weakly correlated
41 ZNF479 10 6.4 Weakly correlated
42 ZNF251 9 94.0 Moderately correlated
43 ZNF585B 8 99.0 Highly correlated
44 ZNF554 8 99.0 Highly correlated
45 ZNF141 7 43.0 Weakly correlated
46 ZNF26 7 99.0 Highly correlated
47 ZNF250 7 99.0 Highly correlated
48 ZFP37 6 99.0 Highly correlated
49 ZNF7 6 99.0 Highly correlated
50 ZNF257 6 0.0 Weakly correlated
51 ZNF160 6 74.0 Weakly correlated
52 ZNF2 6 99.0 Highly correlated
53 ZNF169 5 94.0 Moderately correlated
54 ZNF320 5 28.9 Weakly correlated
55 ZNF589 5 28.9 Weakly correlated
56 ZNF793 5 99.0 Highly correlated
57 ZNF695 5 28.9 Weakly correlated
58 ZKSCAN5 4 160.0 Weakly correlated
59 ZNF44 4 43.0 Weakly correlated
60 ZNF486 4 8.6 Weakly correlated
61 ZNF440 4 28.9 Weakly correlated
62 ZNF597 4 94.0 Moderately correlated
63 ZNF584 4 99.0 Highly correlated
64 ZNF707 4 74.0 Weakly correlated
65 ZNF816 4 28.9 Weakly correlated
66 ZNF528 3 43.0 Weakly correlated
67 ZNF567 3 99.0 Highly correlated
68 ZNF679 3 28.9 Weakly correlated
69 ZNF823 3 43.0 Weakly correlated
70 ZNF197 3 99.0 Highly correlated
71 ZNF354A 3 99.0 Highly correlated
72 ZNF175 3 94.0 Moderately correlated
73 ZNF394 3 99.0 Highly correlated
74 ZNF549 3 87.0 Moderately correlated
75 ZNF189 3 99.0 Highly correlated
76 ZNF671 3 94.0 Moderately correlated
77 ZFP69B 2 99.0 Highly correlated
78 ZKSCAN1 2 160.0 Weakly correlated
79 ZNF506 2 28.9 Weakly correlated
80 ZNF610 2 28.9 Weakly correlated
81 ZNF429 2 28.9 Weakly correlated
82 ZNF417 2 28.9 Weakly correlated
83 ZNF28 2 28.9 Weakly correlated
84 ZNF350 2 99.0 Highly correlated
85 ZNF468 2 28.9 Weakly correlated
86 ZNF778 2 74.0 Weakly correlated
87 ZNF471 2 94.0 Moderately correlated
88 ZIK1 1 87.0 Moderately correlated
89 ZKSCAN8 1 160.0 Weakly correlated
90 ZNF136 1 74.0 Weakly correlated
91 ZNF560 1 43.0 Weakly correlated
92 ZNF17 1 69.0 Weakly correlated
93 ZNF225 1 74.0 Weakly correlated
94 ZNF436 1 180.0 Weakly correlated
95 ZNF583 1 99.0 Highly correlated
96 ZNF347 1 43.0 Weakly correlated
97 ZNF483 1 99.0 Highly correlated
98 ZNF799 1 43.0 Weakly correlated
99 ZNF283 1 99.0 Highly correlated
100 ZNF674 1 99.0 Highly correlated
101 ZNF736 1 43.0 Weakly correlated
102 ZNF675 1 8.6 Weakly correlated
103 ZNF716 1 19.6 Weakly correlated
104 ZNF878 1 43.0 Weakly correlated
105 ZNF331 1 94.0 Moderately correlated
106 ZNF587 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP28 99.0 Highly correlated
2 ZFP37 99.0 Highly correlated
3 ZFP57 87.0 Moderately correlated
4 ZFP90 99.0 Highly correlated
5 ZNF10 99.0 Highly correlated
6 ZNF18 160.0 Weakly correlated
7 ZNF248 99.0 Highly correlated
8 ZNF250 99.0 Highly correlated
9 ZNF251 94.0 Moderately correlated
10 ZNF257 0.0 Weakly correlated
11 ZNF263 180.0 Weakly correlated
12 ZNF26 99.0 Highly correlated
13 ZNF317 99.0 Highly correlated
14 ZNF382 99.0 Highly correlated
15 ZNF479 6.4 Weakly correlated
16 ZNF490 43.0 Weakly correlated
17 ZNF554 99.0 Highly correlated
18 ZNF680 28.9 Weakly correlated
19 ZNF701 28.9 Weakly correlated
20 ZNF723 15.2 Weakly correlated
21 ZNF75D 94.0 Moderately correlated
22 ZNF766 43.0 Weakly correlated
23 ZNF792 94.0 Moderately correlated
24 ZNF84 99.0 Highly correlated
25 ZNF92 28.9 Weakly correlated