ZRdb KZFP & Repeats
...

LINE_L1M4_5END

  • Name
    L1M4_5END
  • Repbase
    L1MB6_5
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000245
Description :

Gag ORF ~1058-2044, Pol ORF ~2537-2686 (end).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gggtgacgtcagcgaaaatggcggagtaaggacctccgaaaatccnctcctccataaaagcaacgagaacactggcaaaaattgtcagaatcaactttttcagaactctggaaattaaccaaaggcttgcagcaatccggggagcgtttattcaagaaaaacggctgaatctcggtaagaacagcgagctttgtggcgttttaacttgccctattcccatccccctctccccagctccgcggtagccttgaaaaccaacagcccgcaatcacggtgaaaaccagcagcctggcagccactggagggggcagaacgggnttggagctcctccaaagccccattcccagagaattgtcattatttgacctgtctggcggttccctggaagaccccactcgcagggcttgtctttatttgacctgactcggagctcgcccagtgcgaanagccttttccccgggggcatttgtcgaaaacaatcagnggcaattgtttaacatcgcagctgcctgaggcggtggataacagttggggcaaacaanaggctgaccaaaaagcttaaaaggaaaagctggggaatgagatgtccatagggggctttgaaaagctccgacatattcctgggaatctagaaggccacgcgcatgcgcagggctgtgcgcatgcccaggaaagacctgagaaggccctaagctctcacctctggctgaccttgaggctctgcgcaagcaggaagtgaaggctaaggcagagttgtaaactgcctggctgagcgttgaaggcgtgccccaacacgcacacagagcccctcggcaaagactgggagacttattggttccaggcatttaaggaaatctctgtccaatcattagctgaccactaagctaaccgagcagagacttcagtggccacacacgacaaagaatacagactttacagaattagttcagaaaagtcactaaacaaacagcaacaacaacaacaaacagcaacaacaacaaaccctggggaggggggagaatctgatttccagagttgccacattatattatttaaaatgtccagttttcaacaaaaaattacgagacatgcaaagaaacaagaaagtatggcccatacacaggaaaaaaagcagtcaatagaaactgtccctgaggaagcccagacgttggacttactagacaaagactttaaatcagctattttaaatatgttcaaagaactaaaggaaaccatgtctaaagaactaaaggaaagtatgagaacgatgtctcaccaaatagagaatatcaataaagagatagaaattataaaaaagaaccaaatagaaattctggagttgaaaagtacaataactgaaatgaaaaattcactagaggggctcaacagcagatttgagcaggcagaagaaagaatcagcgaacttgaagataggtcaattgagattatccagtctgaggaacagaaagaaaaaagaatgaagaaaaatgaacagagcctnagagacctgtgggacaccatcaagcgtaccaacatacgcataatgggagtcccagaaggagaggagagagagaaaggggcagaaagaatatttgaagaaataatggccgaaaacttcccaaatttgatgaaaaacatnaatctacacatccaagaagctcaacgaactccaagtaggataaactcaaagagatccacaccnagacacatcataatcaaactgtcgaaagccaaagacaaagagagaatcttgaaagcagcaagagagaagcgactcatcacgtacaagggatcctcaataagattaacagctgatttctcatcagaaaccatggaggccagaaggcagtgggatgacatattcaaagtgctgaaagaaaaagactgtcaaccaagaattctatatccggcaaaactatccttcaaaaatgaaggagaaattaagacattcccagataaacaaaaactgagagaattcgtcgctagcagacctgccctacaagaaatgctaaagggagtccttcaggctgaaatgaaaggacactagacagtaactcgaatccacatgaagaaataaagagcaccggtaaaggtaactacataggtaaatataaaagacagtatnaatgtatttttngtttgtaactctttttttctcctatntgatttaaaagacaantgcataaagcaataattataaatctgtgttgatgggcacacaatgtataaagatgtaatttgtatgacaataacagcacaaaggaggggggagggaacggagctatataggagcaaagtttttgtatactattgaaattaagttggtattaattcgaactagattgttataaattaagatgttaattgtaatccccagggcaaccactaagaaaataactnaaaaatatatagtaaaagaaacganaagggaattaaaatggtacactagaaaatatctattnaacacaaaagaaggcagtaatggaggaatngaggaacaaaaaagacataagacatatagaaaacaaatagcaaaatggcagangtaaatcctnccttatcagtaattacattaaatgtaaatggattaaacnctccaatcaaaaggcagagattggcagaatggattaaaaaacatgatccaactatatgctgtctacaagagacncactttagattcaaagac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 1305 99.0 Highly correlated
2 ZNF317 755 99.0 Highly correlated
3 ZNF558 360 99.0 Highly correlated
4 ZNF136 277 74.0 Weakly correlated
5 ZNF160 247 74.0 Weakly correlated
6 ZIM3 243 87.0 Moderately correlated
7 ZNF394 210 99.0 Highly correlated
8 ZNF680 208 28.9 Weakly correlated
9 ZNF766 203 43.0 Weakly correlated
10 ZFP28 191 99.0 Highly correlated
11 ZNF248 183 99.0 Highly correlated
12 ZNF490 141 43.0 Weakly correlated
13 ZNF140 139 99.0 Highly correlated
14 ZNF175 135 94.0 Moderately correlated
15 ZNF793 129 99.0 Highly correlated
16 ZNF263 117 180.0 Weakly correlated
17 ZNF10 108 99.0 Highly correlated
18 ZNF705B 107 28.9 Weakly correlated
19 ZNF274 105 99.0 Highly correlated
20 ZFP37 101 99.0 Highly correlated
21 ZNF677 101 99.0 Highly correlated
22 ZNF679 98 28.9 Weakly correlated
23 ZNF18 94 160.0 Weakly correlated
24 ZNF2 90 99.0 Highly correlated
25 ZNF432 87 99.0 Highly correlated
26 ZNF92 87 28.9 Weakly correlated
27 ZNF723 84 15.2 Weakly correlated
28 ZNF133 82 99.0 Highly correlated
29 ZNF182 78 99.0 Highly correlated
30 ZNF324 77 99.0 Highly correlated
31 ZNF705D 66 28.9 Weakly correlated
32 ZNF610 63 28.9 Weakly correlated
33 ZNF101 59 43.0 Weakly correlated
34 ZNF479 59 6.4 Weakly correlated
35 ZNF534 58 19.6 Weakly correlated
36 ZNF589 56 28.9 Weakly correlated
37 ZNF251 51 94.0 Moderately correlated
38 ZNF879 51 99.0 Highly correlated
39 ZFP69 50 99.0 Highly correlated
40 ZNF154 50 94.0 Moderately correlated
41 ZNF471 50 94.0 Moderately correlated
42 ZKSCAN1 47 160.0 Weakly correlated
43 ZNF354A 47 99.0 Highly correlated
44 ZNF554 47 99.0 Highly correlated
45 ZNF550 46 94.0 Moderately correlated
46 ZNF250 41 99.0 Highly correlated
47 ZNF287 40 99.0 Highly correlated
48 ZFP69B 39 99.0 Highly correlated
49 ZNF584 34 99.0 Highly correlated
50 ZNF701 34 28.9 Weakly correlated
51 ZNF84 34 99.0 Highly correlated
52 ZNF506 33 28.9 Weakly correlated
53 ZNF585A 33 99.0 Highly correlated
54 ZNF197 32 99.0 Highly correlated
55 ZNF75D 31 94.0 Moderately correlated
56 ZNF441 30 43.0 Weakly correlated
57 ZNF486 30 8.6 Weakly correlated
58 ZNF597 30 94.0 Moderately correlated
59 ZNF8 30 99.0 Highly correlated
60 ZNF257 29 0.0 Weakly correlated
61 ZKSCAN8 27 160.0 Weakly correlated
62 ZNF585B 26 99.0 Highly correlated
63 ZNF549 25 87.0 Moderately correlated
64 ZNF519 23 19.6 Weakly correlated
65 ZNF485 22 94.0 Moderately correlated
66 ZNF28 19 28.9 Weakly correlated
67 ZNF792 19 94.0 Moderately correlated
68 ZFP57 18 87.0 Moderately correlated
69 ZNF528 18 43.0 Weakly correlated
70 ZNF735 17 28.9 Weakly correlated
71 ZNF337 16 43.0 Weakly correlated
72 ZNF547 16 74.0 Weakly correlated
73 ZNF707 16 74.0 Weakly correlated
74 ZNF26 15 99.0 Highly correlated
75 ZFP90 14 99.0 Highly correlated
76 ZNF429 14 28.9 Weakly correlated
77 ZNF202 13 160.0 Weakly correlated
78 ZNF81 13 99.0 Highly correlated
79 ZNF671 12 94.0 Moderately correlated
80 ZNF823 12 43.0 Weakly correlated
81 ZNF169 11 94.0 Moderately correlated
82 ZNF211 11 94.0 Moderately correlated
83 ZNF284 11 43.0 Weakly correlated
84 ZNF320 11 28.9 Weakly correlated
85 ZNF583 11 99.0 Highly correlated
86 ZNF641 11 99.0 Highly correlated
87 ZNF695 11 28.9 Weakly correlated
88 ZNF264 10 99.0 Highly correlated
89 ZNF454 10 99.0 Highly correlated
90 ZNF135 9 94.0 Moderately correlated
91 ZNF425 9 94.0 Moderately correlated
92 ZNF682 9 28.9 Weakly correlated
93 ZNF17 8 69.0 Weakly correlated
94 ZNF282 7 319.0 Weakly correlated
95 ZNF440 7 28.9 Weakly correlated
96 ZNF510 7 99.0 Highly correlated
97 ZNF782 7 99.0 Highly correlated
98 ZNF786 7 99.0 Highly correlated
99 ZNF100 6 28.9 Weakly correlated
100 ZNF141 6 43.0 Weakly correlated
101 ZNF230 6 28.9 Weakly correlated
102 ZNF273 6 28.9 Weakly correlated
103 ZNF808 6 19.6 Weakly correlated
104 ZNF85 6 28.9 Weakly correlated
105 ZKSCAN5 5 160.0 Weakly correlated
106 ZNF225 5 74.0 Weakly correlated
107 ZNF44 5 43.0 Weakly correlated
108 ZNF468 5 28.9 Weakly correlated
109 ZNF530 5 28.9 Weakly correlated
110 ZNF559 5 74.0 Weakly correlated
111 ZNF560 5 43.0 Weakly correlated
112 ZNF674 5 99.0 Highly correlated
113 ZNF778 5 74.0 Weakly correlated
114 ZFP30 4 99.0 Highly correlated
115 ZNF184 4 99.0 Highly correlated
116 ZNF189 4 99.0 Highly correlated
117 ZNF253 4 19.6 Weakly correlated
118 ZNF730 4 19.6 Weakly correlated
119 ZNF878 4 43.0 Weakly correlated
120 ZFP82 3 99.0 Highly correlated
121 ZNF224 3 69.0 Weakly correlated
122 ZNF30 3 94.0 Moderately correlated
123 ZNF331 3 94.0 Moderately correlated
124 ZNF347 3 43.0 Weakly correlated
125 ZNF41 3 99.0 Highly correlated
126 ZNF420 3 94.0 Moderately correlated
127 ZNF43 3 43.0 Weakly correlated
128 ZNF483 3 99.0 Highly correlated
129 ZNF563 3 28.9 Weakly correlated
130 ZNF568 3 99.0 Highly correlated
131 ZNF569 3 99.0 Highly correlated
132 ZNF570 3 99.0 Highly correlated
133 ZNF611 3 19.6 Weakly correlated
134 ZNF675 3 8.6 Weakly correlated
135 ZNF716 3 19.6 Weakly correlated
136 ZNF791 3 87.0 Moderately correlated
137 ZNF91 3 6.0 Weakly correlated
138 ZFP14 2 99.0 Highly correlated
139 ZFP1 2 99.0 Highly correlated
140 ZKSCAN4 2 99.0 Highly correlated
141 ZNF124 2 43.0 Weakly correlated
142 ZNF177 2 94.0 Moderately correlated
143 ZNF214 2 99.0 Highly correlated
144 ZNF222 2 43.0 Weakly correlated
145 ZNF227 2 99.0 Highly correlated
146 ZNF234 2 99.0 Highly correlated
147 ZNF304 2 99.0 Highly correlated
148 ZNF33A 2 99.0 Highly correlated
149 ZNF354B 2 99.0 Highly correlated
150 ZNF354C 2 99.0 Highly correlated
151 ZNF418 2 43.0 Weakly correlated
152 ZNF445 2 99.0 Highly correlated
153 ZNF446 2 94.0 Moderately correlated
154 ZNF480 2 43.0 Weakly correlated
155 ZNF484 2 99.0 Highly correlated
156 ZNF529 2 99.0 Highly correlated
157 ZNF556 2 94.0 Moderately correlated
158 ZNF566 2 99.0 Highly correlated
159 ZNF567 2 99.0 Highly correlated
160 ZNF613 2 99.0 Highly correlated
161 ZNF624 2 99.0 Highly correlated
162 ZNF627 2 74.0 Weakly correlated
163 ZNF649 2 28.9 Weakly correlated
164 ZNF658 2 99.0 Highly correlated
165 ZNF669 2 43.0 Weakly correlated
166 ZNF66 2 0.0 Weakly correlated
167 ZNF705E 2 0.0 Weakly correlated
168 ZNF718 2 19.6 Weakly correlated
169 ZNF747 2 43.0 Weakly correlated
170 ZNF799 2 43.0 Weakly correlated
171 ZNF7 2 99.0 Highly correlated
172 ZNF813 2 28.9 Weakly correlated
173 ZNF845 2 28.9 Weakly correlated
174 PRDM9 1 0.0 Weakly correlated
175 RBAK 1 99.0 Highly correlated
176 ZIK1 1 87.0 Moderately correlated
177 ZKSCAN2 1 180.0 Weakly correlated
178 ZKSCAN3 1 99.0 Highly correlated
179 ZNF112 1 99.0 Highly correlated
180 ZNF114 1 28.9 Weakly correlated
181 ZNF14 1 69.0 Weakly correlated
182 ZNF212 1 160.0 Weakly correlated
183 ZNF221 1 74.0 Weakly correlated
184 ZNF223 1 43.0 Weakly correlated
185 ZNF226 1 99.0 Highly correlated
186 ZNF233 1 99.0 Highly correlated
187 ZNF235 1 99.0 Highly correlated
188 ZNF256 1 74.0 Weakly correlated
189 ZNF286A 1 160.0 Weakly correlated
190 ZNF311 1 99.0 Highly correlated
191 ZNF334 1 99.0 Highly correlated
192 ZNF343 1 74.0 Weakly correlated
193 ZNF350 1 99.0 Highly correlated
194 ZNF398 1 99.0 Highly correlated
195 ZNF430 1 19.6 Weakly correlated
196 ZNF433 1 43.0 Weakly correlated
197 ZNF442 1 43.0 Weakly correlated
198 ZNF45 1 99.0 Highly correlated
199 ZNF460 1 74.0 Weakly correlated
200 ZNF487 1 28.9 Weakly correlated
201 ZNF500 1 160.0 Weakly correlated
202 ZNF514 1 94.0 Moderately correlated
203 ZNF544 1 0.0 Weakly correlated
204 ZNF571 1 99.0 Highly correlated
205 ZNF573 1 94.0 Moderately correlated
206 ZNF586 1 43.0 Weakly correlated
207 ZNF605 1 99.0 Highly correlated
208 ZNF607 1 43.0 Weakly correlated
209 ZNF616 1 43.0 Weakly correlated
210 ZNF630 1 94.0 Moderately correlated
211 ZNF665 1 28.9 Weakly correlated
212 ZNF700 1 28.9 Weakly correlated
213 ZNF705A 1 28.9 Weakly correlated
214 ZNF727 1 19.6 Weakly correlated
215 ZNF728 1 19.6 Weakly correlated
216 ZNF729 1 8.6 Weakly correlated
217 ZNF732 1 28.9 Weakly correlated
218 ZNF736 1 43.0 Weakly correlated
219 ZNF749 1 28.9 Weakly correlated
220 ZNF74 1 99.0 Highly correlated
221 ZNF75A 1 94.0 Moderately correlated
222 ZNF761 1 19.6 Weakly correlated
223 ZNF765 1 8.6 Weakly correlated
224 ZNF772 1 94.0 Moderately correlated
225 ZNF773 1 94.0 Moderately correlated
226 ZNF777 1 319.0 Weakly correlated
227 ZNF77 1 87.0 Moderately correlated
228 ZNF789 1 99.0 Highly correlated
229 ZNF805 1 99.0 Highly correlated
230 ZNF816 1 28.9 Weakly correlated
231 ZNF836 1 43.0 Weakly correlated
232 ZNF846 1 74.0 Weakly correlated
233 ZNF850 1 28.9 Weakly correlated
234 ZNF891 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF160 233 74.0 Weakly correlated
2 ZNF136 223 74.0 Weakly correlated
3 ZNF382 195 99.0 Highly correlated
4 ZNF317 191 99.0 Highly correlated
5 ZNF248 161 99.0 Highly correlated
6 ZIM3 136 87.0 Moderately correlated
7 ZNF558 130 99.0 Highly correlated
8 ZNF490 114 43.0 Weakly correlated
9 ZNF10 99 99.0 Highly correlated
10 ZNF677 97 99.0 Highly correlated
11 ZFP28 96 99.0 Highly correlated
12 ZNF432 73 99.0 Highly correlated
13 ZNF680 70 28.9 Weakly correlated
14 ZNF793 55 99.0 Highly correlated
15 ZNF133 54 99.0 Highly correlated
16 ZNF723 48 15.2 Weakly correlated
17 ZNF154 47 94.0 Moderately correlated
18 ZNF879 41 99.0 Highly correlated
19 ZFP69 38 99.0 Highly correlated
20 ZNF250 38 99.0 Highly correlated
21 ZNF534 32 19.6 Weakly correlated
22 ZNF550 31 94.0 Moderately correlated
23 ZNF354A 30 99.0 Highly correlated
24 ZNF471 30 94.0 Moderately correlated
25 ZNF101 29 43.0 Weakly correlated
26 ZNF84 29 99.0 Highly correlated
27 ZNF287 29 99.0 Highly correlated
28 ZNF324 27 99.0 Highly correlated
29 ZNF766 26 43.0 Weakly correlated
30 ZNF140 25 99.0 Highly correlated
31 ZNF92 20 28.9 Weakly correlated
32 ZNF263 19 180.0 Weakly correlated
33 ZNF705B 19 28.9 Weakly correlated
34 ZNF585A 19 99.0 Highly correlated
35 ZNF75D 16 94.0 Moderately correlated
36 ZNF705D 16 28.9 Weakly correlated
37 ZNF479 15 6.4 Weakly correlated
38 ZNF485 14 94.0 Moderately correlated
39 ZFP90 13 99.0 Highly correlated
40 ZNF81 11 99.0 Highly correlated
41 ZNF337 10 43.0 Weakly correlated
42 ZNF18 10 160.0 Weakly correlated
43 ZNF701 10 28.9 Weakly correlated
44 ZNF695 9 28.9 Weakly correlated
45 ZNF26 9 99.0 Highly correlated
46 ZNF506 9 28.9 Weakly correlated
47 ZNF792 9 94.0 Moderately correlated
48 ZNF735 9 28.9 Weakly correlated
49 ZNF597 8 94.0 Moderately correlated
50 ZNF589 8 28.9 Weakly correlated
51 ZNF257 7 0.0 Weakly correlated
52 ZNF610 7 28.9 Weakly correlated
53 ZNF251 7 94.0 Moderately correlated
54 ZNF175 6 94.0 Moderately correlated
55 ZNF211 6 94.0 Moderately correlated
56 ZNF394 6 99.0 Highly correlated
57 ZFP57 5 87.0 Moderately correlated
58 ZNF141 5 43.0 Weakly correlated
59 ZNF549 5 87.0 Moderately correlated
60 ZNF264 5 99.0 Highly correlated
61 ZNF528 5 43.0 Weakly correlated
62 ZFP37 4 99.0 Highly correlated
63 ZNF2 4 99.0 Highly correlated
64 ZNF782 4 99.0 Highly correlated
65 ZNF671 4 94.0 Moderately correlated
66 ZFP82 3 99.0 Highly correlated
67 ZKSCAN1 3 160.0 Weakly correlated
68 ZKSCAN8 3 160.0 Weakly correlated
69 ZNF169 3 94.0 Moderately correlated
70 ZNF641 3 99.0 Highly correlated
71 ZNF202 3 160.0 Weakly correlated
72 ZNF225 3 74.0 Weakly correlated
73 ZNF584 3 99.0 Highly correlated
74 ZNF530 3 28.9 Weakly correlated
75 ZNF679 3 28.9 Weakly correlated
76 ZNF823 3 43.0 Weakly correlated
77 ZNF674 3 99.0 Highly correlated
78 ZNF8 3 99.0 Highly correlated
79 ZNF28 3 28.9 Weakly correlated
80 ZNF44 3 43.0 Weakly correlated
81 ZFP14 2 99.0 Highly correlated
82 ZNF707 2 74.0 Weakly correlated
83 ZNF627 2 74.0 Weakly correlated
84 ZNF320 2 28.9 Weakly correlated
85 ZNF197 2 99.0 Highly correlated
86 ZNF429 2 28.9 Weakly correlated
87 ZNF85 2 28.9 Weakly correlated
88 ZFP1 1 99.0 Highly correlated
89 ZFP69B 1 99.0 Highly correlated
90 ZKSCAN5 1 160.0 Weakly correlated
91 ZNF100 1 28.9 Weakly correlated
92 ZNF30 1 94.0 Moderately correlated
93 ZNF425 1 94.0 Moderately correlated
94 ZNF560 1 43.0 Weakly correlated
95 ZNF716 1 19.6 Weakly correlated
96 ZNF347 1 43.0 Weakly correlated
97 ZNF483 1 99.0 Highly correlated
98 ZNF547 1 74.0 Weakly correlated
99 ZNF570 1 99.0 Highly correlated
100 ZNF224 1 69.0 Weakly correlated
101 ZNF433 1 43.0 Weakly correlated
102 ZNF567 1 99.0 Highly correlated
103 ZNF816 1 28.9 Weakly correlated
104 ZNF845 1 28.9 Weakly correlated
105 ZNF878 1 43.0 Weakly correlated
106 ZNF17 1 69.0 Weakly correlated
107 ZNF230 1 28.9 Weakly correlated
108 ZNF33A 1 99.0 Highly correlated
109 ZNF554 1 99.0 Highly correlated
110 ZNF583 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF133 99.0 Highly correlated
2 ZNF136 74.0 Weakly correlated
3 ZNF175 94.0 Moderately correlated
4 ZNF248 99.0 Highly correlated
5 ZNF257 0.0 Weakly correlated
6 ZNF263 180.0 Weakly correlated
7 ZNF26 99.0 Highly correlated
8 ZNF317 99.0 Highly correlated
9 ZNF337 43.0 Weakly correlated
10 ZNF382 99.0 Highly correlated
11 ZNF471 94.0 Moderately correlated
12 ZNF490 43.0 Weakly correlated
13 ZNF585A 99.0 Highly correlated
14 ZNF589 28.9 Weakly correlated
15 ZNF597 94.0 Moderately correlated
16 ZNF610 28.9 Weakly correlated
17 ZNF677 99.0 Highly correlated
18 ZNF680 28.9 Weakly correlated
19 ZNF701 28.9 Weakly correlated
20 ZNF705B 28.9 Weakly correlated
21 ZNF75D 94.0 Moderately correlated
22 ZNF792 94.0 Moderately correlated
23 ZNF793 99.0 Highly correlated
24 ZNF84 99.0 Highly correlated