ZRdb KZFP & Repeats
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LINE_L1M4C_5END

  • Name
    L1M4C_5END
  • Repbase
    L1MB3_5
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000249
Description :

ORF1 open reading frame from pos ~782 to 1765, ORF2 starts at pos ~2346.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ataaaaaaantaatgaggagaggattctgggaagatggcggagtaggaagcaccaggaatctgtctccccacctagacaacaattgcactggcagaatctgtctgatgtaactattttggaactctggagtctattgaaggcttgcaacttccaggggaaggcttggacggtaaattgcggttaatttcggtcaatttcagctcttagcacagtagcagctacccatcccccacccccagccccgtggcaggcagctgtgcacgtgttcctggagcagcttgcacacagcttgcgggagccagggtgggcaaaaaggaccctgtcctccaaatatcggggatctgtgctctgatcgctgattgctgcttctgatcacagaggtgcagacaaagaggcgggcggccattgttgttgcacctccccccattgttgcaagcccctccccctccggctgaagtgacttccaggggatttaaagggccggcgccctttctccccttcatttttcttttttccccttttgggagccagacattaaagactaggacattcaaaagcaaccgcatatacggggaaaattagaaagtnaccgcgcatgcccagggaaaggcgcaggctcagaaaagacctgagaagaccttaagtttacacctcaggctgatcctcggcacagagacagcctacaacaataaaaacaaaacaaaaaaataacaaaaacacagcaaaccctggggaagggggagaatctgatttccagagttaccacattattagattcaaatgtccagttttcaacaacaacaaaaaatcacaaggcatacaaagaaacaggaaagtatggcccattcaaaggaaaaaaataaatcaacagaaactgtccctgaaaaagacctgatggcagatctactagacaaagactttaaaacaactgtcttaaagatgctcaaagaactaaaggaagacgtggagaaagtcaagaaaacgatgtatgaacaaaatggaaatatcaacaaagagatagaaaacntaaaaagaaaccaaaaagaaattctggagctgaaaagtacaataactgaantgaaaaattcactagagggattcaanagcagatttgagcaggcagaagaaagaatcagcgaacttgaagacaggncantngaaattatcgagtctgaggaacagaaagaaaaaagantgaagaaaagtgaacagagcctaagggacctgtgggacaccatcaagcggaccaacatacgcattatgggagtcccagaaggagaagagagagagaaaggggcagagagantatttgaagaaataatggccgaaaacttcccaaatttgangaaagacatgaatatananatccaagaagctcaacgaactccaagtaggatgaactcaaagagacccacaccgagacacattataatcaaactgtcgaaagtcaaagacaaagagagaatcttgaaagcagcaagagaaaagcgactcgtcacatacaagggatcctcaataagattatcagcggatttctcancagaaaccttgnaggccagaaggcagtgggntgatatattcaaagtgctgaaagaaaaaaactgtcaaccaagaatnctatatccggcaaaactgtccttcaaaaatgagggagaaattaagacattcccagataaacaaaagctgagggagttcgttaccactagacctgccctacaagaaatgctaaagggagtccttcaggttgaaatgaaaggacgctagacagtaacncgaagccgtatgaagaaataaagatctcagtaaaggtaaatacatgggcaantataaaagctagtattattgtaacgatggtttgtaactccactttttgttttctacatgatttaagagactaatacattttnaaaaattattagtctaaaagctagtattattgtaactttggtttgtaactccacattttgttttctacataatttaagagactaatgcatttaaaaaaattattagtttatgtttttgggcacacaatgtataaagatgtaattttgtgacatcaacaactgaaaggggtggggacggagctgtaaaggagcagagtttttgtatgtnattgaagttaagttgntatnaattcaaantagantgttataactttaggatgttnnatgtaatccccatggtaaccacaaagaaaatanctatagaatatacacaaaaggaaatgagaaaggaatcaaaacgtntcactacaaaaaaatcaactaaacacaaaggaagacagtaangnaggaaatgagggacaaaaaagctataagacatacagaaaacaantagcaaaatggcagnagtaagtccttccctatcagtaattactttaaatgtaaatggattaaactctccaatcaaaagacanagattggcngaatggattaaaaaacangatccaactatatgctgtctacaagagactcactttagatctaaggacacaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF558 210 99.0 Highly correlated
2 ZNF382 192 99.0 Highly correlated
3 ZNF160 166 74.0 Weakly correlated
4 ZNF136 148 74.0 Weakly correlated
5 ZNF317 141 99.0 Highly correlated
6 ZNF490 96 43.0 Weakly correlated
7 ZNF766 79 43.0 Weakly correlated
8 ZNF680 73 28.9 Weakly correlated
9 ZIM3 71 87.0 Moderately correlated
10 ZNF793 66 99.0 Highly correlated
11 ZNF154 40 94.0 Moderately correlated
12 ZNF394 35 99.0 Highly correlated
13 ZNF263 29 180.0 Weakly correlated
14 ZNF337 27 43.0 Weakly correlated
15 ZNF471 27 94.0 Moderately correlated
16 ZNF534 27 19.6 Weakly correlated
17 ZNF679 27 28.9 Weakly correlated
18 ZNF92 26 28.9 Weakly correlated
19 ZNF251 25 94.0 Moderately correlated
20 ZNF2 24 99.0 Highly correlated
21 ZNF705B 23 28.9 Weakly correlated
22 ZNF324 21 99.0 Highly correlated
23 ZNF705D 21 28.9 Weakly correlated
24 ZFP37 20 99.0 Highly correlated
25 ZNF133 20 99.0 Highly correlated
26 ZNF585A 20 99.0 Highly correlated
27 ZNF182 18 99.0 Highly correlated
28 ZNF18 18 160.0 Weakly correlated
29 ZNF589 18 28.9 Weakly correlated
30 ZNF248 17 99.0 Highly correlated
31 ZNF723 16 15.2 Weakly correlated
32 ZFP28 14 99.0 Highly correlated
33 ZKSCAN1 14 160.0 Weakly correlated
34 ZNF175 14 94.0 Moderately correlated
35 ZNF354A 14 99.0 Highly correlated
36 ZNF479 13 6.4 Weakly correlated
37 ZNF584 13 99.0 Highly correlated
38 ZNF287 12 99.0 Highly correlated
39 ZNF677 12 99.0 Highly correlated
40 ZNF879 11 99.0 Highly correlated
41 ZFP69B 10 99.0 Highly correlated
42 ZNF101 10 43.0 Weakly correlated
43 ZNF274 10 99.0 Highly correlated
44 ZNF547 10 74.0 Weakly correlated
45 ZKSCAN8 8 160.0 Weakly correlated
46 ZNF197 8 99.0 Highly correlated
47 ZNF320 8 28.9 Weakly correlated
48 ZNF506 8 28.9 Weakly correlated
49 ZNF695 8 28.9 Weakly correlated
50 ZNF701 8 28.9 Weakly correlated
51 ZNF77 8 87.0 Moderately correlated
52 ZNF597 7 94.0 Moderately correlated
53 ZNF250 6 99.0 Highly correlated
54 ZNF585B 6 99.0 Highly correlated
55 ZNF202 5 160.0 Weakly correlated
56 ZNF28 5 28.9 Weakly correlated
57 ZNF441 5 43.0 Weakly correlated
58 ZNF485 5 94.0 Moderately correlated
59 ZNF486 5 8.6 Weakly correlated
60 ZNF8 5 99.0 Highly correlated
61 ZFP90 4 99.0 Highly correlated
62 ZNF425 4 94.0 Moderately correlated
63 ZNF519 4 19.6 Weakly correlated
64 ZNF528 4 43.0 Weakly correlated
65 ZNF549 4 87.0 Moderately correlated
66 ZNF554 4 99.0 Highly correlated
67 ZNF610 4 28.9 Weakly correlated
68 ZNF707 4 74.0 Weakly correlated
69 ZNF735 4 28.9 Weakly correlated
70 ZNF84 4 99.0 Highly correlated
71 ZNF93 4 8.6 Weakly correlated
72 ZFP30 3 99.0 Highly correlated
73 ZFP57 3 87.0 Moderately correlated
74 ZNF169 3 94.0 Moderately correlated
75 ZNF33A 3 99.0 Highly correlated
76 ZNF41 3 99.0 Highly correlated
77 ZNF510 3 99.0 Highly correlated
78 ZNF563 3 28.9 Weakly correlated
79 ZNF641 3 99.0 Highly correlated
80 ZNF75D 3 94.0 Moderately correlated
81 ZNF808 3 19.6 Weakly correlated
82 ZKSCAN5 2 160.0 Weakly correlated
83 ZNF135 2 94.0 Moderately correlated
84 ZNF141 2 43.0 Weakly correlated
85 ZNF17 2 69.0 Weakly correlated
86 ZNF257 2 0.0 Weakly correlated
87 ZNF264 2 99.0 Highly correlated
88 ZNF284 2 43.0 Weakly correlated
89 ZNF334 2 99.0 Highly correlated
90 ZNF354C 2 99.0 Highly correlated
91 ZNF445 2 99.0 Highly correlated
92 ZNF483 2 99.0 Highly correlated
93 ZNF567 2 99.0 Highly correlated
94 ZNF573 2 94.0 Moderately correlated
95 ZNF682 2 28.9 Weakly correlated
96 ZNF730 2 19.6 Weakly correlated
97 ZNF778 2 74.0 Weakly correlated
98 ZNF791 2 87.0 Moderately correlated
99 ZNF823 2 43.0 Weakly correlated
100 ZFP69 1 99.0 Highly correlated
101 ZFP82 1 99.0 Highly correlated
102 ZNF114 1 28.9 Weakly correlated
103 ZNF124 1 43.0 Weakly correlated
104 ZNF140 1 99.0 Highly correlated
105 ZNF211 1 94.0 Moderately correlated
106 ZNF26 1 99.0 Highly correlated
107 ZNF273 1 28.9 Weakly correlated
108 ZNF343 1 74.0 Weakly correlated
109 ZNF430 1 19.6 Weakly correlated
110 ZNF433 1 43.0 Weakly correlated
111 ZNF454 1 99.0 Highly correlated
112 ZNF468 1 28.9 Weakly correlated
113 ZNF557 1 15.2 Weakly correlated
114 ZNF568 1 99.0 Highly correlated
115 ZNF578 1 15.2 Weakly correlated
116 ZNF583 1 99.0 Highly correlated
117 ZNF611 1 19.6 Weakly correlated
118 ZNF614 1 99.0 Highly correlated
119 ZNF674 1 99.0 Highly correlated
120 ZNF716 1 19.6 Weakly correlated
121 ZNF777 1 319.0 Weakly correlated
122 ZNF792 1 94.0 Moderately correlated
123 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF160 155 74.0 Weakly correlated
2 ZNF136 124 74.0 Weakly correlated
3 ZNF558 95 99.0 Highly correlated
4 ZNF490 87 43.0 Weakly correlated
5 ZIM3 48 87.0 Moderately correlated
6 ZNF317 42 99.0 Highly correlated
7 ZNF154 38 94.0 Moderately correlated
8 ZNF382 33 99.0 Highly correlated
9 ZNF793 32 99.0 Highly correlated
10 ZNF471 25 94.0 Moderately correlated
11 ZNF337 25 43.0 Weakly correlated
12 ZNF534 17 19.6 Weakly correlated
13 ZNF680 16 28.9 Weakly correlated
14 ZNF248 15 99.0 Highly correlated
15 ZNF766 12 43.0 Weakly correlated
16 ZNF723 12 15.2 Weakly correlated
17 ZNF677 11 99.0 Highly correlated
18 ZNF287 11 99.0 Highly correlated
19 ZNF585A 10 99.0 Highly correlated
20 ZNF354A 9 99.0 Highly correlated
21 ZNF324 8 99.0 Highly correlated
22 ZNF263 8 180.0 Weakly correlated
23 ZNF879 8 99.0 Highly correlated
24 ZNF705D 7 28.9 Weakly correlated
25 ZFP28 7 99.0 Highly correlated
26 ZNF705B 7 28.9 Weakly correlated
27 ZNF479 6 6.4 Weakly correlated
28 ZNF101 6 43.0 Weakly correlated
29 ZNF250 5 99.0 Highly correlated
30 ZNF485 5 94.0 Moderately correlated
31 ZNF695 5 28.9 Weakly correlated
32 ZNF133 4 99.0 Highly correlated
33 ZNF641 3 99.0 Highly correlated
34 ZNF707 3 74.0 Weakly correlated
35 ZFP90 3 99.0 Highly correlated
36 ZNF84 3 99.0 Highly correlated
37 ZNF528 2 43.0 Weakly correlated
38 ZNF92 2 28.9 Weakly correlated
39 ZNF202 2 160.0 Weakly correlated
40 ZNF701 2 28.9 Weakly correlated
41 ZNF320 2 28.9 Weakly correlated
42 ZNF735 2 28.9 Weakly correlated
43 ZNF823 2 43.0 Weakly correlated
44 ZNF251 2 94.0 Moderately correlated
45 ZNF394 2 99.0 Highly correlated
46 ZNF264 2 99.0 Highly correlated
47 ZNF169 1 94.0 Moderately correlated
48 ZNF597 1 94.0 Moderately correlated
49 ZNF28 1 28.9 Weakly correlated
50 ZNF549 1 87.0 Moderately correlated
51 ZNF433 1 43.0 Weakly correlated
52 ZNF2 1 99.0 Highly correlated
53 ZNF468 1 28.9 Weakly correlated
54 ZNF41 1 99.0 Highly correlated
55 ZNF18 1 160.0 Weakly correlated
56 ZFP69 1 99.0 Highly correlated
57 ZFP82 1 99.0 Highly correlated
58 ZNF141 1 43.0 Weakly correlated
59 ZNF274 1 99.0 Highly correlated
60 ZNF425 1 94.0 Moderately correlated
61 ZNF430 1 19.6 Weakly correlated
62 ZNF506 1 28.9 Weakly correlated
63 ZNF777 1 319.0 Weakly correlated
64 ZNF211 1 94.0 Moderately correlated
65 ZNF33A 1 99.0 Highly correlated
66 ZNF563 1 28.9 Weakly correlated
67 ZNF26 1 99.0 Highly correlated
68 ZNF510 1 99.0 Highly correlated
69 ZNF567 1 99.0 Highly correlated
70 ZNF75D 1 94.0 Moderately correlated
71 ZNF679 1 28.9 Weakly correlated
72 ZNF17 1 69.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF136 74.0 Weakly correlated
2 ZNF248 99.0 Highly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF287 99.0 Highly correlated
5 ZNF317 99.0 Highly correlated
6 ZNF324 99.0 Highly correlated
7 ZNF337 43.0 Weakly correlated
8 ZNF471 94.0 Moderately correlated
9 ZNF490 43.0 Weakly correlated
10 ZNF558 99.0 Highly correlated
11 ZNF677 99.0 Highly correlated
12 ZNF680 28.9 Weakly correlated
13 ZNF793 99.0 Highly correlated