ZRdb KZFP & Repeats
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LINE_L1M4B_5END

  • Name
    L1M4B_5END
  • Repbase
    L1M4B
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000248
Description :

gag ORF 1357-2340, pol ORF 3088-3237 (end)
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
aaggagttccacttccggaatggcggcgtgaggagctccgcggacccgctccccagcgaaacaaccataactggtgaaaattattttaaaaaaacaaccatttaaagtctctggaaattgtcctaagggcatacagcaaatgaagaaacatttattcaagaaaatctactaaatctcggtaagaacagcgagagtctgtggcatttgagccacgacccgctccctcctcccccctccccagctcagcgtgacggaagctccactccgggcgggtgcggccaagaanacggggctccctctccccccagctcccagtcgagggctacggtatctccccgggaggggcaggccgccagcatttctcatcccccccagctccgtgttgcagaggctaaattccaggcgagtgcggccgagaggtcgggggctcccttcctccacccagcccccactcgtagggcggaggctctaccccgggcgcggcaggccgagaatactggggccccgatcgccctcgccccagctcgctcgtagggcggaggttccacgccgggagaggcaagccgagaagaccagaggctaccgcccccgcccagcgccctgctcntaaagcaggggtgtcactccgagagaagcgggccactgtccccgcccccagctccggagcagtggctcagagattttgcccagggggagaggcaggccataagaacagagagctccgaagctctccccaaaggaactgactttatttgnaacagagtgtggggaagttcaagcctaagggcgctctcgaaaacaatggagattttggtggtaagcaattaagaggaggctggtagctccatgagagcaacaagctaaaccgtaggccagctagtttaccagagagaaccagggaaagagacagctaagaagagccctcctggggtcagaacaaacctcaaagactggcctcaaaaactacccctgcaaaggggcccgaatttaattggatcagactgtggagcaatttatgccccagggcattgtcgaaaacaatagagcaatcagccggcaattagtggagcctaacagctgggtgtgataccaacagaggcagacagcttaacagagagatcagggaaagagacagtcaaagagagccctgctaaaaccactgtcatcccagggtgactgtgcgcatgcccaaggctgcgccctctgaggagcgacatcagaggcttcacactgcgggggaaatagacttcactaaaatagtccagccaagtcactaaacaaataaacaagcaaacaacaacaacaagccgggggaggggaatcagtatccagagttgctacaatatattatctaaaatgtccagttttcaacaaaaaattatgagacatgcaaagaaacaggaaagtgtgacccatacacaggaaaaaaagcaggcaacagaaactgcctgtgagagggcccagatgtcggatttagcagacaaagacttcaaagcagccattataaatatgttcaaagaactaaaggaaaccatgnttaaagaagtaaaggaaggtatgatgacaatgtctcatcaaatagagaatatcaataaagagatagaaattataaaaaagaaccaaatggaaattctggagttgaaaagtacaataactgaaatgaaaaattcactagaggggctcaacagtagatttgaactggcagaagaaagaatcagcgaacttgaagatagatcgatagagattatgcaatccgaagaacagagagaaaaaagaatgaagaaaaatgaacagagcctcagagaaatgtgggacaccattaagcgcaccaacatacgcgtaatgggagtaccagaaggagaggagagagagaaaggagcagaaaaaatattcgaagaaataatggctgaaaacttcccaaatttgatgaaaaacattaatctacacatccaagaagctcaacgaactccaagtaggataaacgcaaagagatccacacccagacacatcatagtaaaaatgctgaaagccaaagacaaagagaaaatcttgaaagcagcaagagaaaaacgactcatcacgtacaagggaaccccaataagattaacagctgacttctcatcagaaacaatggaggccagaaggcagtgggatgacatattcaaagtgctgaaagaaaaaaactgtcaaccaagaatcctatatccagcaaaactatctttcaaaaatgaaggcgaaataaagacattcccagataaacaaaaactgagagaatttgttgctagcagacccgccttacaagaaatactaaaggaagttcttcaggctgaaagcaagtgaccccagacggtaattcgaatccacacgaaaaaacaaagagcaccggtaaaggtaattatgtaattataaaagacagtataaatgcatatttcttctcctttcttctcttaactgatttaaaaagcaattgtataaaacaatatgtatataattgtattgttgggcctataacatatagaaatgtaatatatttgacaataacagcacaaaggaggtgggtgggagcaaagctgtattggagtaaggaaatgacaccagatggtaactcgaatccacaggaacaaatgaagagaaccagaaatggtaaataagaaggttaatataacaaactctataaatatatacttgctctcctttcttctctcagcttctttaaaagacataaaattatataaagtaataattataacaatgtattgttgggtttgtaacatatatagatgtaatatgtataacaataatagcacaaaaagggggaaaagggaatagagctatataggagtaacgtttctatatctcactggaattaagttagtataaatctgaagtngattctgataagttaagatgtatatggtaagccctagagcaaccactaagaaaataactcaaaaaaatatagtgaaaaaaatcattaaaggaattaaaatgttacactagaaaatattcacttaatgcaaaagaaagcagtaaaggaggaatagaggaacaaaaaagacatgagacatatagaaaacaaaaagtaaaatggcagacgtaaatccaactatatcaataataacattaaatgtgaatggattaaacaatccaatcaaaaggcagagattgtcagactggattaaaaaacaagatccaactatatgctgtctacaggagacacactttagattcaaagat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF317 504 99.0 Highly correlated
2 ZNF382 322 99.0 Highly correlated
3 ZNF136 123 74.0 Weakly correlated
4 ZNF680 97 28.9 Weakly correlated
5 ZNF766 95 43.0 Weakly correlated
6 ZNF160 91 74.0 Weakly correlated
7 ZNF263 87 180.0 Weakly correlated
8 ZIM3 82 87.0 Moderately correlated
9 ZNF793 67 99.0 Highly correlated
10 ZNF677 58 99.0 Highly correlated
11 ZNF394 51 99.0 Highly correlated
12 ZNF558 43 99.0 Highly correlated
13 ZNF610 42 28.9 Weakly correlated
14 ZNF324 40 99.0 Highly correlated
15 ZFP28 36 99.0 Highly correlated
16 ZFP37 36 99.0 Highly correlated
17 ZKSCAN1 34 160.0 Weakly correlated
18 ZNF2 33 99.0 Highly correlated
19 ZNF133 32 99.0 Highly correlated
20 ZNF679 32 28.9 Weakly correlated
21 ZNF534 31 19.6 Weakly correlated
22 ZNF705B 31 28.9 Weakly correlated
23 ZNF671 30 94.0 Moderately correlated
24 ZNF18 29 160.0 Weakly correlated
25 ZNF490 27 43.0 Weakly correlated
26 ZNF589 26 28.9 Weakly correlated
27 ZNF202 25 160.0 Weakly correlated
28 ZNF479 25 6.4 Weakly correlated
29 ZNF554 25 99.0 Highly correlated
30 ZNF175 23 94.0 Moderately correlated
31 ZFP69B 21 99.0 Highly correlated
32 ZNF705D 21 28.9 Weakly correlated
33 ZNF92 21 28.9 Weakly correlated
34 ZNF251 20 94.0 Moderately correlated
35 ZNF549 20 87.0 Moderately correlated
36 ZNF182 19 99.0 Highly correlated
37 ZNF782 17 99.0 Highly correlated
38 ZNF471 16 94.0 Moderately correlated
39 ZNF723 16 15.2 Weakly correlated
40 ZNF197 15 99.0 Highly correlated
41 ZNF257 15 0.0 Weakly correlated
42 ZNF584 15 99.0 Highly correlated
43 ZNF519 14 19.6 Weakly correlated
44 ZNF879 14 99.0 Highly correlated
45 ZNF282 13 319.0 Weakly correlated
46 ZNF547 13 74.0 Weakly correlated
47 ZKSCAN8 12 160.0 Weakly correlated
48 ZNF274 12 99.0 Highly correlated
49 ZNF320 11 28.9 Weakly correlated
50 ZNF486 11 8.6 Weakly correlated
51 ZNF585B 11 99.0 Highly correlated
52 ZNF101 10 43.0 Weakly correlated
53 ZNF273 10 28.9 Weakly correlated
54 ZNF28 10 28.9 Weakly correlated
55 ZNF528 10 43.0 Weakly correlated
56 ZNF287 9 99.0 Highly correlated
57 ZNF485 9 94.0 Moderately correlated
58 ZNF585A 9 99.0 Highly correlated
59 ZNF786 8 99.0 Highly correlated
60 ZNF224 7 69.0 Weakly correlated
61 ZNF264 7 99.0 Highly correlated
62 ZNF441 7 43.0 Weakly correlated
63 ZNF75D 7 94.0 Moderately correlated
64 ZFP57 6 87.0 Moderately correlated
65 ZNF140 6 99.0 Highly correlated
66 ZNF141 6 43.0 Weakly correlated
67 ZNF230 6 28.9 Weakly correlated
68 ZNF248 6 99.0 Highly correlated
69 ZNF483 6 99.0 Highly correlated
70 ZNF506 6 28.9 Weakly correlated
71 ZNF597 6 94.0 Moderately correlated
72 ZNF707 6 74.0 Weakly correlated
73 ZNF26 5 99.0 Highly correlated
74 ZNF343 5 74.0 Weakly correlated
75 ZNF354A 5 99.0 Highly correlated
76 ZNF695 5 28.9 Weakly correlated
77 ZNF701 5 28.9 Weakly correlated
78 ZNF792 5 94.0 Moderately correlated
79 ZNF8 5 99.0 Highly correlated
80 ZFP90 4 99.0 Highly correlated
81 ZNF100 4 28.9 Weakly correlated
82 ZNF33A 4 99.0 Highly correlated
83 ZNF468 4 28.9 Weakly correlated
84 ZNF560 4 43.0 Weakly correlated
85 ZNF682 4 28.9 Weakly correlated
86 ZNF735 4 28.9 Weakly correlated
87 ZNF823 4 43.0 Weakly correlated
88 ZFP69 3 99.0 Highly correlated
89 ZNF10 3 99.0 Highly correlated
90 ZNF17 3 69.0 Weakly correlated
91 ZNF30 3 94.0 Moderately correlated
92 ZNF331 3 94.0 Moderately correlated
93 ZNF568 3 99.0 Highly correlated
94 ZNF583 3 99.0 Highly correlated
95 ZNF669 3 43.0 Weakly correlated
96 ZNF674 3 99.0 Highly correlated
97 ZNF716 3 19.6 Weakly correlated
98 ZNF778 3 74.0 Weakly correlated
99 ZNF816 3 28.9 Weakly correlated
100 ZFP1 2 99.0 Highly correlated
101 ZFP30 2 99.0 Highly correlated
102 ZKSCAN5 2 160.0 Weakly correlated
103 ZNF124 2 43.0 Weakly correlated
104 ZNF189 2 99.0 Highly correlated
105 ZNF334 2 99.0 Highly correlated
106 ZNF337 2 43.0 Weakly correlated
107 ZNF347 2 43.0 Weakly correlated
108 ZNF354B 2 99.0 Highly correlated
109 ZNF41 2 99.0 Highly correlated
110 ZNF420 2 94.0 Moderately correlated
111 ZNF425 2 94.0 Moderately correlated
112 ZNF429 2 28.9 Weakly correlated
113 ZNF43 2 43.0 Weakly correlated
114 ZNF543 2 99.0 Highly correlated
115 ZNF561 2 43.0 Weakly correlated
116 ZNF563 2 28.9 Weakly correlated
117 ZNF77 2 87.0 Moderately correlated
118 ZNF791 2 87.0 Moderately correlated
119 ZNF808 2 19.6 Weakly correlated
120 ZNF813 2 28.9 Weakly correlated
121 ZNF846 2 74.0 Weakly correlated
122 ZNF84 2 99.0 Highly correlated
123 ZNF878 2 43.0 Weakly correlated
124 ZNF91 2 6.0 Weakly correlated
125 PRDM9 1 0.0 Weakly correlated
126 ZFP14 1 99.0 Highly correlated
127 ZFP82 1 99.0 Highly correlated
128 ZNF169 1 94.0 Moderately correlated
129 ZNF19 1 99.0 Highly correlated
130 ZNF211 1 94.0 Moderately correlated
131 ZNF222 1 43.0 Weakly correlated
132 ZNF223 1 43.0 Weakly correlated
133 ZNF225 1 74.0 Weakly correlated
134 ZNF253 1 19.6 Weakly correlated
135 ZNF283 1 99.0 Highly correlated
136 ZNF284 1 43.0 Weakly correlated
137 ZNF304 1 99.0 Highly correlated
138 ZNF350 1 99.0 Highly correlated
139 ZNF418 1 43.0 Weakly correlated
140 ZNF510 1 99.0 Highly correlated
141 ZNF530 1 28.9 Weakly correlated
142 ZNF555 1 94.0 Moderately correlated
143 ZNF559 1 74.0 Weakly correlated
144 ZNF570 1 99.0 Highly correlated
145 ZNF571 1 99.0 Highly correlated
146 ZNF573 1 94.0 Moderately correlated
147 ZNF586 1 43.0 Weakly correlated
148 ZNF616 1 43.0 Weakly correlated
149 ZNF675 1 8.6 Weakly correlated
150 ZNF700 1 28.9 Weakly correlated
151 ZNF780A 1 43.0 Weakly correlated
152 ZNF81 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF317 142 99.0 Highly correlated
2 ZNF136 101 74.0 Weakly correlated
3 ZNF160 86 74.0 Weakly correlated
4 ZNF677 51 99.0 Highly correlated
5 ZIM3 51 87.0 Moderately correlated
6 ZNF382 34 99.0 Highly correlated
7 ZNF793 31 99.0 Highly correlated
8 ZNF133 26 99.0 Highly correlated
9 ZNF263 24 180.0 Weakly correlated
10 ZNF680 22 28.9 Weakly correlated
11 ZNF490 22 43.0 Weakly correlated
12 ZNF671 19 94.0 Moderately correlated
13 ZFP28 18 99.0 Highly correlated
14 ZNF558 15 99.0 Highly correlated
15 ZNF879 13 99.0 Highly correlated
16 ZNF534 13 19.6 Weakly correlated
17 ZNF479 12 6.4 Weakly correlated
18 ZNF471 11 94.0 Moderately correlated
19 ZNF723 8 15.2 Weakly correlated
20 ZNF782 8 99.0 Highly correlated
21 ZNF485 7 94.0 Moderately correlated
22 ZNF554 7 99.0 Highly correlated
23 ZNF287 7 99.0 Highly correlated
24 ZNF766 6 43.0 Weakly correlated
25 ZNF202 6 160.0 Weakly correlated
26 ZNF264 6 99.0 Highly correlated
27 ZNF28 5 28.9 Weakly correlated
28 ZNF248 5 99.0 Highly correlated
29 ZNF585A 5 99.0 Highly correlated
30 ZNF92 5 28.9 Weakly correlated
31 ZNF26 4 99.0 Highly correlated
32 ZNF282 4 319.0 Weakly correlated
33 ZNF324 4 99.0 Highly correlated
34 ZNF705B 4 28.9 Weakly correlated
35 ZFP90 4 99.0 Highly correlated
36 ZNF679 4 28.9 Weakly correlated
37 ZNF75D 4 94.0 Moderately correlated
38 ZNF141 4 43.0 Weakly correlated
39 ZFP69B 4 99.0 Highly correlated
40 ZNF257 3 0.0 Weakly correlated
41 ZNF506 3 28.9 Weakly correlated
42 ZFP37 3 99.0 Highly correlated
43 ZNF549 3 87.0 Moderately correlated
44 ZNF695 3 28.9 Weakly correlated
45 ZFP69 3 99.0 Highly correlated
46 ZNF705D 3 28.9 Weakly correlated
47 ZNF10 3 99.0 Highly correlated
48 ZNF101 3 43.0 Weakly correlated
49 ZNF597 2 94.0 Moderately correlated
50 ZNF589 2 28.9 Weakly correlated
51 ZNF716 2 19.6 Weakly correlated
52 ZNF394 2 99.0 Highly correlated
53 ZFP1 2 99.0 Highly correlated
54 ZNF354A 2 99.0 Highly correlated
55 ZNF175 2 94.0 Moderately correlated
56 ZNF610 2 28.9 Weakly correlated
57 ZNF320 2 28.9 Weakly correlated
58 ZNF585B 2 99.0 Highly correlated
59 ZNF519 2 19.6 Weakly correlated
60 ZNF337 2 43.0 Weakly correlated
61 ZNF251 2 94.0 Moderately correlated
62 ZFP14 1 99.0 Highly correlated
63 ZNF41 1 99.0 Highly correlated
64 ZNF707 1 74.0 Weakly correlated
65 PRDM9 1 0.0 Weakly correlated
66 ZNF701 1 28.9 Weakly correlated
67 ZNF528 1 43.0 Weakly correlated
68 ZNF792 1 94.0 Moderately correlated
69 ZNF878 1 43.0 Weakly correlated
70 ZNF182 1 99.0 Highly correlated
71 ZNF274 1 99.0 Highly correlated
72 ZFP57 1 87.0 Moderately correlated
73 ZKSCAN1 1 160.0 Weakly correlated
74 ZNF100 1 28.9 Weakly correlated
75 ZNF563 1 28.9 Weakly correlated
76 ZNF675 1 8.6 Weakly correlated
77 ZNF735 1 28.9 Weakly correlated
78 ZNF823 1 43.0 Weakly correlated
79 ZNF84 1 99.0 Highly correlated
80 ZNF124 1 43.0 Weakly correlated
81 ZNF33A 1 99.0 Highly correlated
82 ZNF8 1 99.0 Highly correlated
83 ZNF350 1 99.0 Highly correlated
84 ZNF197 1 99.0 Highly correlated
85 ZNF354B 1 99.0 Highly correlated
86 ZNF468 1 28.9 Weakly correlated
87 ZNF584 1 99.0 Highly correlated
88 ZNF808 1 19.6 Weakly correlated
89 ZNF2 1 99.0 Highly correlated
90 ZNF343 1 74.0 Weakly correlated
91 ZNF347 1 43.0 Weakly correlated
92 ZNF81 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF133 99.0 Highly correlated
2 ZNF136 74.0 Weakly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF317 99.0 Highly correlated
5 ZNF471 94.0 Moderately correlated
6 ZNF479 6.4 Weakly correlated
7 ZNF490 43.0 Weakly correlated
8 ZNF534 19.6 Weakly correlated
9 ZNF554 99.0 Highly correlated
10 ZNF671 94.0 Moderately correlated
11 ZNF677 99.0 Highly correlated
12 ZNF680 28.9 Weakly correlated
13 ZNF782 99.0 Highly correlated
14 ZNF793 99.0 Highly correlated