ZRdb KZFP & Repeats
...

LINE_L1M4A2_5END

  • Name
    L1M4A2_5END
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000247
Description :

gag ORF ~1058-2047, pol ORF ~2507-2656 (end).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggggcgggacttccggaatggcggagtgaggagctcggcaaatcctctccccaaaaagcaacgataaaactggacaaaattgtcaaaaacaaccatttcaggactctggaaatcgaccaaaggcatacaacaaattgagaagcgtttattcangaaaaactactgaacctcgggtaagaacagtgggagtctgtggcgttttngcctggggctgctcccatcccccaccccagctccgtcggcgcggtagttctaccagggcggggcaggccgtgaaaaccagcagcttcgctgccggagggggctgacttgatttggagcggagcgcggaaaaaccccacgcccaggggcattgtcggaaacagtagcgatctcggtggcaaacgaacggggaaggccaacgncncagctagcctgaggttgcggtnctggttggggcaagcaacagaccggcagactagccagaaatttaacagggagatccggggaatgagacagccatagngggccttgataagctcccacatatccctggcggtctggaaggctgcgcgcacgcgcaggagagaccggagagggcccnagctatccacacatccctggctgaacgtgaggccttgcgcacgcgcagaggagacgcgagagggcccggcggaaagtaaaagccggggcagacttgnaaactgcctgaactttgaangcgttccccaanccacacacagatccatcggcaaagggtggaagccttactggctcaaggtgtttaagcacaacctctgaccaatcattggctgaccactaagctatgctgacncaggggcgacccctaggaagccaggcttaaaaataaaaacaagaatnaaaaaaaaactgagcagagacatcagcggccgcacactgcgggggagacagacttcacaganttagtccaggcaagtcactaaacaaacaaacaaaaacaaacaaaacaacaacaacaaccctcaggggggaaaaatcagaatccagagttgctacaatatattatctaaaatgtccagttttcaacaaaaaattacgagacatgcaaagaaacaggaaagtgtgacccatacncaggaaaaaaagcagtcaatagaaactgtctctgagngggcccagatgttggacttagcagacaaagacttcaaagcagctattataaatatgttcaaagaactaaaggaaaccatgtttaaagaattaaaggaaagtatgacgacaatgactcancaaatagagaatatcaataaagagatagaaattataaaaaagaaccaaatggaaattctggagttgaaaagtacaataactgaaatgaaaaattcactagaggggctcaacagcagatttgagatggcagaagaaagaatcagtgaacttgaagatagatcaatagaaattatccaatctgaagaacagagagaaaaaagaatgaagaaaaatgaacagagcctcagagacctgtgggacancatcaagcgtaccaacatacgcgtaatgggagtcccagaaggagaggagagagagaaaggggcagaaaaaatatttgaagaaataatggccgaaaacttcccaaatttgatgaaaaacattaatctacacatccaagaagctcaacgaaccccaagtaggataaacacaaagagatccacacctagacacatcatagtcaaactgttgaaagccaaagacaaagagaaaatcttgaaagcagcaagagaaaaacgactcatcacgtacaggggaacnncaataagattaacggctgacttctcatcagaaacaatggaggccagaaggcagtgggatgacatattcaaagtgctgaaagaaaaaaactgtcaaccaagaattctatatccagcaaaactatccttcaaaaatgaaggcgaaataaagacattcccagataaacaaagactgagagaattcgttgctagcagacctgccttacaagaaatactaaaggaagtccttcaggctgaaaggaaatgacaccagacggtaactcgaatccacangaagaaatgaagagcaccggaaatggtaaatatgtaggtaaatataaaagactntataaatatattttttctcatttcttctcttaacttctttaaaagacataagattgcataaagcaataattataacactgtattgttgggtttataacatatatagatgtaatatatatgacaataatagcacaaaggaggggggaggaaatggagctatattggagcaaagtttctatattttaccggaattaagttagtattaatctgaagtagattgtgataagttaagatgcatattgtaatccctagagcaaccactaagaaaataactcaaaaanatatagttaaaaaatcaacagaggaattaaaatggtacactaaaaatatttatttaacacaaaagaaggcagtaaaggaggaacagaggaacaaaaaagacatgagacatatagaaaacaaatagcaaaatggcagacgtaaatccaaccatatcaataattacattaaatgtaaatggactaaacactccaatcaaaaggcagagattgtcagactggataaaaaagcaagatccaactatatgctgtctacaagagacacactttagattcaaagac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF317 175 99.0 Highly correlated
2 ZNF382 160 99.0 Highly correlated
3 ZNF160 53 74.0 Weakly correlated
4 ZNF136 51 74.0 Weakly correlated
5 ZNF680 44 28.9 Weakly correlated
6 ZNF793 36 99.0 Highly correlated
7 ZIM3 34 87.0 Moderately correlated
8 ZNF558 29 99.0 Highly correlated
9 ZNF263 26 180.0 Weakly correlated
10 ZNF766 22 43.0 Weakly correlated
11 ZNF133 17 99.0 Highly correlated
12 ZNF394 17 99.0 Highly correlated
13 ZNF490 16 43.0 Weakly correlated
14 ZNF705B 15 28.9 Weakly correlated
15 ZNF2 13 99.0 Highly correlated
16 ZNF354A 13 99.0 Highly correlated
17 ZNF479 13 6.4 Weakly correlated
18 ZNF92 12 28.9 Weakly correlated
19 ZNF534 11 19.6 Weakly correlated
20 ZNF554 11 99.0 Highly correlated
21 ZNF679 11 28.9 Weakly correlated
22 ZFP28 10 99.0 Highly correlated
23 ZFP37 9 99.0 Highly correlated
24 ZNF182 9 99.0 Highly correlated
25 ZNF471 9 94.0 Moderately correlated
26 ZNF677 9 99.0 Highly correlated
27 ZNF782 9 99.0 Highly correlated
28 ZNF26 8 99.0 Highly correlated
29 ZNF723 8 15.2 Weakly correlated
30 ZNF251 7 94.0 Moderately correlated
31 ZNF701 7 28.9 Weakly correlated
32 ZFP57 6 87.0 Moderately correlated
33 ZKSCAN1 6 160.0 Weakly correlated
34 ZNF101 6 43.0 Weakly correlated
35 ZNF485 6 94.0 Moderately correlated
36 ZNF567 6 99.0 Highly correlated
37 ZNF589 6 28.9 Weakly correlated
38 ZNF705D 6 28.9 Weakly correlated
39 ZNF175 5 94.0 Moderately correlated
40 ZNF197 5 99.0 Highly correlated
41 ZNF257 5 0.0 Weakly correlated
42 ZNF324 5 99.0 Highly correlated
43 ZNF350 5 99.0 Highly correlated
44 ZNF486 5 8.6 Weakly correlated
45 ZNF610 5 28.9 Weakly correlated
46 ZNF75D 5 94.0 Moderately correlated
47 ZNF879 5 99.0 Highly correlated
48 ZNF18 4 160.0 Weakly correlated
49 ZNF287 4 99.0 Highly correlated
50 ZNF320 4 28.9 Weakly correlated
51 ZNF547 4 74.0 Weakly correlated
52 ZNF549 4 87.0 Moderately correlated
53 ZNF778 4 74.0 Weakly correlated
54 ZFP69B 3 99.0 Highly correlated
55 ZKSCAN8 3 160.0 Weakly correlated
56 ZNF248 3 99.0 Highly correlated
57 ZNF253 3 19.6 Weakly correlated
58 ZNF429 3 28.9 Weakly correlated
59 ZNF506 3 28.9 Weakly correlated
60 ZNF584 3 99.0 Highly correlated
61 ZNF597 3 94.0 Moderately correlated
62 ZFP90 2 99.0 Highly correlated
63 ZKSCAN5 2 160.0 Weakly correlated
64 ZNF10 2 99.0 Highly correlated
65 ZNF274 2 99.0 Highly correlated
66 ZNF44 2 43.0 Weakly correlated
67 ZNF528 2 43.0 Weakly correlated
68 ZNF563 2 28.9 Weakly correlated
69 ZNF674 2 99.0 Highly correlated
70 ZNF716 2 19.6 Weakly correlated
71 ZNF780A 2 43.0 Weakly correlated
72 ZNF84 2 99.0 Highly correlated
73 ZNF93 2 8.6 Weakly correlated
74 ZNF140 1 99.0 Highly correlated
75 ZNF141 1 43.0 Weakly correlated
76 ZNF169 1 94.0 Moderately correlated
77 ZNF17 1 69.0 Weakly correlated
78 ZNF202 1 160.0 Weakly correlated
79 ZNF211 1 94.0 Moderately correlated
80 ZNF222 1 43.0 Weakly correlated
81 ZNF225 1 74.0 Weakly correlated
82 ZNF230 1 28.9 Weakly correlated
83 ZNF235 1 99.0 Highly correlated
84 ZNF250 1 99.0 Highly correlated
85 ZNF273 1 28.9 Weakly correlated
86 ZNF28 1 28.9 Weakly correlated
87 ZNF30 1 94.0 Moderately correlated
88 ZNF33A 1 99.0 Highly correlated
89 ZNF354B 1 99.0 Highly correlated
90 ZNF41 1 99.0 Highly correlated
91 ZNF441 1 43.0 Weakly correlated
92 ZNF519 1 19.6 Weakly correlated
93 ZNF529 1 99.0 Highly correlated
94 ZNF573 1 94.0 Moderately correlated
95 ZNF585A 1 99.0 Highly correlated
96 ZNF585B 1 99.0 Highly correlated
97 ZNF586 1 43.0 Weakly correlated
98 ZNF665 1 28.9 Weakly correlated
99 ZNF669 1 43.0 Weakly correlated
100 ZNF671 1 94.0 Moderately correlated
101 ZNF675 1 8.6 Weakly correlated
102 ZNF684 1 99.0 Highly correlated
103 ZNF707 1 74.0 Weakly correlated
104 ZNF735 1 28.9 Weakly correlated
105 ZNF749 1 28.9 Weakly correlated
106 ZNF780B 1 74.0 Weakly correlated
107 ZNF799 1 43.0 Weakly correlated
108 ZNF878 1 43.0 Weakly correlated
109 ZNF8 1 99.0 Highly correlated
110 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF160 48 74.0 Weakly correlated
2 ZNF317 43 99.0 Highly correlated
3 ZNF136 39 74.0 Weakly correlated
4 ZNF382 21 99.0 Highly correlated
5 ZIM3 18 87.0 Moderately correlated
6 ZNF133 17 99.0 Highly correlated
7 ZNF793 16 99.0 Highly correlated
8 ZNF558 11 99.0 Highly correlated
9 ZNF490 11 43.0 Weakly correlated
10 ZNF680 11 28.9 Weakly correlated
11 ZNF354A 10 99.0 Highly correlated
12 ZNF677 9 99.0 Highly correlated
13 ZNF479 8 6.4 Weakly correlated
14 ZNF471 8 94.0 Moderately correlated
15 ZNF26 7 99.0 Highly correlated
16 ZFP28 5 99.0 Highly correlated
17 ZNF263 5 180.0 Weakly correlated
18 ZNF534 4 19.6 Weakly correlated
19 ZNF485 4 94.0 Moderately correlated
20 ZNF723 4 15.2 Weakly correlated
21 ZNF879 3 99.0 Highly correlated
22 ZNF782 3 99.0 Highly correlated
23 ZNF766 3 43.0 Weakly correlated
24 ZFP57 3 87.0 Moderately correlated
25 ZNF287 3 99.0 Highly correlated
26 ZNF75D 3 94.0 Moderately correlated
27 ZNF705B 3 28.9 Weakly correlated
28 ZNF197 2 99.0 Highly correlated
29 ZNF679 2 28.9 Weakly correlated
30 ZNF716 2 19.6 Weakly correlated
31 ZNF567 2 99.0 Highly correlated
32 ZFP37 1 99.0 Highly correlated
33 ZFP90 1 99.0 Highly correlated
34 ZNF18 1 160.0 Weakly correlated
35 ZNF671 1 94.0 Moderately correlated
36 ZNF701 1 28.9 Weakly correlated
37 ZNF84 1 99.0 Highly correlated
38 ZNF735 1 28.9 Weakly correlated
39 ZNF749 1 28.9 Weakly correlated
40 ZNF429 1 28.9 Weakly correlated
41 ZNF573 1 94.0 Moderately correlated
42 ZNF705D 1 28.9 Weakly correlated
43 ZNF597 1 94.0 Moderately correlated
44 ZNF554 1 99.0 Highly correlated
45 ZNF33A 1 99.0 Highly correlated
46 ZNF248 1 99.0 Highly correlated
47 ZNF273 1 28.9 Weakly correlated
48 ZNF92 1 28.9 Weakly correlated
49 ZNF528 1 43.0 Weakly correlated
50 ZNF320 1 28.9 Weakly correlated
51 ZNF101 1 43.0 Weakly correlated
52 ZNF251 1 94.0 Moderately correlated
53 ZNF10 1 99.0 Highly correlated
54 ZNF93 1 8.6 Weakly correlated
55 ZNF169 1 94.0 Moderately correlated
56 ZNF506 1 28.9 Weakly correlated
57 ZNF44 1 43.0 Weakly correlated
58 ZNF257 1 0.0 Weakly correlated
59 ZNF350 1 99.0 Highly correlated
60 ZNF225 1 74.0 Weakly correlated
61 ZNF2 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF133 99.0 Highly correlated
2 ZNF136 74.0 Weakly correlated
3 ZNF26 99.0 Highly correlated
4 ZNF317 99.0 Highly correlated
5 ZNF471 94.0 Moderately correlated
6 ZNF490 43.0 Weakly correlated
7 ZNF677 99.0 Highly correlated
8 ZNF680 28.9 Weakly correlated
9 ZNF793 99.0 Highly correlated