ZRdb KZFP & Repeats
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LINE_L1M4A1_5END

  • Name
    L1M4A1_5END
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000246
Description :

gag ORF 956-1939, pol ORF 2430-2579 (end).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggcgggacttccggctatggcggagtgaagaggtcggcaaatcctctccccaaaaaacaantataaaactggacaaaattgtcaaaaacaaccatttcagggctctggaaatcgaccaaaggcanacaacaaattgagaagcgtttattcntgaaaaactgctagaacttcgggtaagaacagtgggagtctgtggcnttcttgcctggggctgctcccatcccacccctccaccccaagctcggtcggcacggtagttctaccagggcggggctggccgtgaaaaccagcagcttcgctgccagagggggctgactcgatttggagcggagggcgaaaacccacgcccagcggcgttgtcagtaaaagtggcgaactcggtaggaaacgaacggggaaaacccgcagctctgctagcctgaggttgcggtcccggttggggcgagcggcggaccagccagaaatttaacggggagatcctggaaatgagagagccatagaagggctagataagctctccacacatccctggctgactgggaaactgcgcgcatgcgcaggggagacccgagagggcccggcggaaagtaaaagccgaggnagacttgagaactgcctgaactttgaatgcgctccccaacccacacacagatccatcggcagagggtggaagccttacgggctcgaggtgtttgagcacaacctctgcccaatcattggctgaccactaagctatgcagacacaggggcgacccctaggaagccaggctaaaaaataaaaataagaatnaaaaaactgagcagagacatcagcggccgcacaccgcgggggagacagattccgcagnttaagtccaggcaagttactaaaaaaaaacaaaaacaaacaaaacaacaacaacaaccctcaggaaaanaaancagaatccagagtcgctacaatatattatctanaatgtccagttttcaacaaaaaattacnagacatgcaaagaaacaggaaaatgtgacccatantcaggaaaaaaagcagtcaatagaaactgactctgagtgggcccagatgttgganttagcagacaaagacttcaaagcagctattataaatatgttcaaagaattaaaggaaantatgtttaaagaattaaaggaaaatatgatgacaatgantnaacaaatagggaatctcaacagagaaatagaaactataaaaaagaaccaaatggaaattctagagctgaaaagtacaataactgaaatgaaaaattcactagatgggcttaacagcagattngagatggcagaagaaagaatcagtgaacttgaagatagatcaatagaaattatccaatctgaagaacagagagaaaaaagattgaagaaaaatgaacagagcctcagagacctgtgggacaatatcaagcgtnccaacatacgtgtaattggagtcccagaaggagaggagagagagaaaggggcagaaaaaatatttgaagaaataatggccgaaaacttcccaaatttgatgaaaaacattaacctacagatccaagaagctcaacgaaccccaagcaggataaacacaaagaaanccacacctagacacatcatagtcaaactgctgaaagccaaagacaaagagaaaatcttgaaagcagcaagagaaaaacgacncattacgtacaggggaacaacgatacgattaacggctgacttctcatcagaaacaatggaggccagaagacagtggaatgacatnttcaaagtgctgaaagaaaaaaactgtcaaccnagaattctatatccagcgaaantatccttcaaaaatgaaggcgaaataaagacattttcagataaacaaaaactgagagaattcgtcgctagcagacctgcnctacaagaaatgctaaaggaagtccttcaggctgaaaggaaatgacaccagacggnaactcgaatccacaggaagaaatgaagagcaccggaaatggtaaatatgtgggtaaatataaaagactgtataaatatattttttctcttttcttctcttaatttctttaaaagacataagattgtttaaagcaanaattataacactgtattgttgggtttataacatatatagatgtaatatatatgacaataatagcacaaaggaggggggaggaaatggagctatattgnngcaaagttnctatattttaccggaattaagtcagtattaacctgaagtagattgtgataagttaaagatgcatattgtaatccctagagcaaccactaagaaaataactcaaaaaatatagctaaaaaatcaacagaggaattaaaatggnacactaaaaatatttgtttaacacaaaagaaggcagnaaaggaggaacagaggaacaaaaaagacatgagacanatagaaaacaaatagcaaaatggcagacntaaatccaaccatatcaataattacattaaatgtaaatggactaaacactccaatcaaaaggcagagattgtcagactggataaaaaagcaagatccaactatatgctgtctacaagagacgcactttagattcaaagac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF317 211 99.0 Highly correlated
2 ZNF382 162 99.0 Highly correlated
3 ZNF136 47 74.0 Weakly correlated
4 ZNF160 44 74.0 Weakly correlated
5 ZNF793 44 99.0 Highly correlated
6 ZNF133 41 99.0 Highly correlated
7 ZNF558 39 99.0 Highly correlated
8 ZNF26 38 99.0 Highly correlated
9 ZNF766 38 43.0 Weakly correlated
10 ZIM3 36 87.0 Moderately correlated
11 ZNF567 36 99.0 Highly correlated
12 ZNF680 25 28.9 Weakly correlated
13 ZNF394 24 99.0 Highly correlated
14 ZNF263 18 180.0 Weakly correlated
15 ZNF354A 17 99.0 Highly correlated
16 ZNF679 15 28.9 Weakly correlated
17 ZNF723 15 15.2 Weakly correlated
18 ZNF610 14 28.9 Weakly correlated
19 ZNF182 13 99.0 Highly correlated
20 ZNF705B 13 28.9 Weakly correlated
21 ZFP28 12 99.0 Highly correlated
22 ZNF324 12 99.0 Highly correlated
23 ZNF479 12 6.4 Weakly correlated
24 ZNF92 12 28.9 Weakly correlated
25 ZNF175 11 94.0 Moderately correlated
26 ZNF534 11 19.6 Weakly correlated
27 ZNF589 11 28.9 Weakly correlated
28 ZNF705D 11 28.9 Weakly correlated
29 ZNF251 10 94.0 Moderately correlated
30 ZFP37 9 99.0 Highly correlated
31 ZNF2 9 99.0 Highly correlated
32 ZNF45 9 99.0 Highly correlated
33 ZNF101 8 43.0 Weakly correlated
34 ZNF18 8 160.0 Weakly correlated
35 ZNF287 8 99.0 Highly correlated
36 ZNF490 8 43.0 Weakly correlated
37 ZNF274 7 99.0 Highly correlated
38 ZNF471 6 94.0 Moderately correlated
39 ZNF519 6 19.6 Weakly correlated
40 ZNF554 6 99.0 Highly correlated
41 ZFP69B 5 99.0 Highly correlated
42 ZKSCAN1 5 160.0 Weakly correlated
43 ZNF140 5 99.0 Highly correlated
44 ZNF248 5 99.0 Highly correlated
45 ZNF549 5 87.0 Moderately correlated
46 ZNF584 5 99.0 Highly correlated
47 ZNF8 5 99.0 Highly correlated
48 ZFP57 4 87.0 Moderately correlated
49 ZNF441 4 43.0 Weakly correlated
50 ZNF485 4 94.0 Moderately correlated
51 ZNF528 4 43.0 Weakly correlated
52 ZNF585A 4 99.0 Highly correlated
53 ZNF585B 4 99.0 Highly correlated
54 ZNF782 4 99.0 Highly correlated
55 ZKSCAN8 3 160.0 Weakly correlated
56 ZNF197 3 99.0 Highly correlated
57 ZNF257 3 0.0 Weakly correlated
58 ZNF735 3 28.9 Weakly correlated
59 ZNF75D 3 94.0 Moderately correlated
60 ZNF791 3 87.0 Moderately correlated
61 ZFP69 2 99.0 Highly correlated
62 ZNF211 2 94.0 Moderately correlated
63 ZNF28 2 28.9 Weakly correlated
64 ZNF43 2 43.0 Weakly correlated
65 ZNF483 2 99.0 Highly correlated
66 ZNF506 2 28.9 Weakly correlated
67 ZNF547 2 74.0 Weakly correlated
68 ZNF587 2 28.9 Weakly correlated
69 ZNF597 2 94.0 Moderately correlated
70 ZNF669 2 43.0 Weakly correlated
71 ZNF730 2 19.6 Weakly correlated
72 ZNF786 2 99.0 Highly correlated
73 ZNF816 2 28.9 Weakly correlated
74 ZNF823 2 43.0 Weakly correlated
75 ZNF845 2 28.9 Weakly correlated
76 ZFP14 1 99.0 Highly correlated
77 ZKSCAN5 1 160.0 Weakly correlated
78 ZNF100 1 28.9 Weakly correlated
79 ZNF141 1 43.0 Weakly correlated
80 ZNF184 1 99.0 Highly correlated
81 ZNF189 1 99.0 Highly correlated
82 ZNF202 1 160.0 Weakly correlated
83 ZNF230 1 28.9 Weakly correlated
84 ZNF253 1 19.6 Weakly correlated
85 ZNF264 1 99.0 Highly correlated
86 ZNF304 1 99.0 Highly correlated
87 ZNF320 1 28.9 Weakly correlated
88 ZNF334 1 99.0 Highly correlated
89 ZNF337 1 43.0 Weakly correlated
90 ZNF354B 1 99.0 Highly correlated
91 ZNF417 1 28.9 Weakly correlated
92 ZNF425 1 94.0 Moderately correlated
93 ZNF486 1 8.6 Weakly correlated
94 ZNF510 1 99.0 Highly correlated
95 ZNF557 1 15.2 Weakly correlated
96 ZNF605 1 99.0 Highly correlated
97 ZNF613 1 99.0 Highly correlated
98 ZNF641 1 99.0 Highly correlated
99 ZNF667 1 99.0 Highly correlated
100 ZNF671 1 94.0 Moderately correlated
101 ZNF674 1 99.0 Highly correlated
102 ZNF695 1 28.9 Weakly correlated
103 ZNF701 1 28.9 Weakly correlated
104 ZNF765 1 8.6 Weakly correlated
105 ZNF778 1 74.0 Weakly correlated
106 ZNF792 1 94.0 Moderately correlated
107 ZNF84 1 99.0 Highly correlated
108 ZNF850 1 28.9 Weakly correlated
109 ZNF878 1 43.0 Weakly correlated
110 ZNF879 1 99.0 Highly correlated
111 ZNF91 1 6.0 Weakly correlated
112 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF317 49 99.0 Highly correlated
2 ZNF160 42 74.0 Weakly correlated
3 ZNF136 36 74.0 Weakly correlated
4 ZNF26 34 99.0 Highly correlated
5 ZNF133 32 99.0 Highly correlated
6 ZNF567 31 99.0 Highly correlated
7 ZIM3 22 87.0 Moderately correlated
8 ZNF793 20 99.0 Highly correlated
9 ZNF382 13 99.0 Highly correlated
10 ZNF558 12 99.0 Highly correlated
11 ZNF354A 10 99.0 Highly correlated
12 ZNF479 8 6.4 Weakly correlated
13 ZNF723 8 15.2 Weakly correlated
14 ZNF101 7 43.0 Weakly correlated
15 ZNF680 6 28.9 Weakly correlated
16 ZNF490 6 43.0 Weakly correlated
17 ZNF471 5 94.0 Moderately correlated
18 ZFP28 5 99.0 Highly correlated
19 ZNF287 4 99.0 Highly correlated
20 ZNF485 4 94.0 Moderately correlated
21 ZNF679 3 28.9 Weakly correlated
22 ZNF766 3 43.0 Weakly correlated
23 ZNF263 3 180.0 Weakly correlated
24 ZNF534 3 19.6 Weakly correlated
25 ZNF705D 3 28.9 Weakly correlated
26 ZNF735 3 28.9 Weakly correlated
27 ZNF705B 3 28.9 Weakly correlated
28 ZNF140 3 99.0 Highly correlated
29 ZNF585A 2 99.0 Highly correlated
30 ZFP69 2 99.0 Highly correlated
31 ZNF248 2 99.0 Highly correlated
32 ZNF8 2 99.0 Highly correlated
33 ZNF528 2 43.0 Weakly correlated
34 ZNF45 2 99.0 Highly correlated
35 ZNF589 1 28.9 Weakly correlated
36 ZNF823 1 43.0 Weakly correlated
37 ZNF674 1 99.0 Highly correlated
38 ZNF879 1 99.0 Highly correlated
39 ZNF667 1 99.0 Highly correlated
40 ZNF584 1 99.0 Highly correlated
41 ZNF84 1 99.0 Highly correlated
42 ZFP37 1 99.0 Highly correlated
43 ZFP57 1 87.0 Moderately correlated
44 ZKSCAN5 1 160.0 Weakly correlated
45 ZNF417 1 28.9 Weakly correlated
46 ZNF506 1 28.9 Weakly correlated
47 ZNF549 1 87.0 Moderately correlated
48 ZNF257 1 0.0 Weakly correlated
49 ZNF354B 1 99.0 Highly correlated
50 ZNF75D 1 94.0 Moderately correlated
51 ZNF483 1 99.0 Highly correlated
52 ZNF585B 1 99.0 Highly correlated
53 ZNF792 1 94.0 Moderately correlated
54 ZNF175 1 94.0 Moderately correlated
55 ZNF18 1 160.0 Weakly correlated
56 ZNF554 1 99.0 Highly correlated
57 ZNF587 1 28.9 Weakly correlated
58 ZNF782 1 99.0 Highly correlated
59 ZNF816 1 28.9 Weakly correlated
60 ZNF197 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF101 43.0 Weakly correlated
2 ZNF133 99.0 Highly correlated
3 ZNF136 74.0 Weakly correlated
4 ZNF26 99.0 Highly correlated
5 ZNF317 99.0 Highly correlated
6 ZNF479 6.4 Weakly correlated
7 ZNF490 43.0 Weakly correlated
8 ZNF567 99.0 Highly correlated
9 ZNF680 28.9 Weakly correlated
10 ZNF723 15.2 Weakly correlated
11 ZNF793 99.0 Highly correlated