ZRdb KZFP & Repeats
...

LINE_L1M3_ORF2

  • Name
    L1M3_ORF2
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000244
Description :

Boreoeutherian-wide
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
atggcaatagtaagtccttncctatcaataattactttaaatgtaaatggattaaactctccaatcaaaagacatagagtggctgaatggataaaaaaacaagatccaactatatgctgcctacaagagactcactttagntttaaggacacacataggctgaaagtgaagggatggaaaaagatattccatgcaaatggtaaccaaaagagagcaggggtggctatacttatatcagacaaaatagactttaagtcaaaaactgtcacaagagacaaagaaggncattatataatgataaaagggtcaattcancaagaagatataacaattataaatatatatgcacccaacatcggagcacctaaatatataaagcaaatattgacagaactgaagggagaaatagacagcaatacaataatagtaggagacttcaataccccactttcaacaatggatagancatccagacagaaaatcaataaggaaacagcggacttgaacaacactatagaccaaatggacctaacagacatatacagaacattccacccaacagcagcagaatacacattcttctcaagcgcacacggaacattctccaggatagatcacatgttaggccacaaaacaagtcttaacaaatttaagaagattgaaatcataccaagtatcttttccgaccacaatggnatgaaactagaaatcaataacagaaggaaaactggaaaattcacaaatatgtggaaattaaacaacacactcctgaacaaccaatgggtcaaagaagaaatcaaaagggaaattagaaaatatcttgagacaaatgaaaatgaaaacacaacataccaaaacttatgggatgcagcaaaagcagtnctaagagggaagtttatagcgataaacgcctacattaaaaaagaagaaagatctcaaataaacaacctaactttacacctcaaggaactagaaaaagaagaacaaactaagcccaaagttagcagaaggaaggaaataataaagattagagcagaaataaatgaaatagagantagaaaaacaatagaaaaaatcaacgaaactaagagttggttttttgaaaagataaacaaaattgacaaacctttagctagactaagaaaaaaagagaagactcaaataaataaaatcagaaatgaaagaggagacattacaactgatgccacagaaataaaaaggatcataagagactactatgaacaattatacgccaacaaattggataacctagaagaaatggataaattcctagaaacatacaacctaccaagactgaatcatgaagaaatagaaaatctgaacagaccaataacgagtaaggagattgaatcagtaatcaaaaacctcccaacaaagaaaagcccaggaccagatggcttcactggtgaattctaccaaacatttaaagaagaattaataccaatccttctcaaactcttccaaaaaattgaagaggagggaacacttccaaactcattttatgaggccagcattaccctgataccaaagccagacaaagacactacaagaaaagaaaactacaggccaatatccctgatgaacatagatgcaaaaatcctcaacaaaatactagcaaaccgaattcaacagcacattaaaaggatcatacaccatgaccaagtgggatttatccctgggatgcaaggatggttcaacatacgnaaatcaatnaatgtgatacaccacattaacagaatgaaggataaaaatcacatgatcatctcaatagatgcagaaaaagcatttgacaaaattcaacatcctttcatgataaaaactctcaacaaactaggnatagaaggaanntacctcaacataataaaggccatatatgaaaagcccacagctaacatcatactcaatggtgaaaaactgaaagcttttcctctaagatcaggaacaaggcaaggatgcccactctcgccacttctattcaacatagtactggaagtcctagccagagcaattaggcaagaaaaagaaataaaaggcatccaaatcggaaaggaagaagtaaaattatctctgtttgcagatgacatgatcttatatgtagaaaaccctaaagactccaccaaaaaactgttagaactaataaacgaattcagtaaagttgcaggatacaaaatcaacatacaaaaatcagttgcgtttctatacactaacaacgaactatccgaaaaggaaattaagaaaacaatcccatttacaatagcatcaaaaagaataaaatacttaggaataaacttaaccaaggaggtgaaagacttgtacactgaaaactataaaacattgatgaaagaaattaaagaagacacaaataaatggaaagacatcccgtgttcatggattggaagaattaatattgttaaaatgtccatactacccaaagcgatctacagattcaatgcaatccctatcaaaatcccaatggcattttttacagaaatagaaaaaacaatcctaaaattcatatggaaccacaaaagaccccgaatagccaaagcaatcttgagaaagaagaacaaagctggaggcatcacacttcctgatttcaaaatatattacaaagctacagtaatcaaaacagtatggtactggcataaaaacagacatatagaccaatggaacagaatagagagcccagaaataaacccacgcatatacggtcaactgatcttcgacaagggtgccaagaatacacaatggggaaaggatagtctcttcaacaaatggtgttgggaaaactggatatccacatgcaaaagaatgaaattggacccttatcttacaccatacacaaaaatcaactcaaaatggattaaagacttaaacgtaagacctgaaactataaaactcctagaagaaaacataggggaaaagcttcntgacattggtcttggcaatgatttcttggatatgacaccaaaagcacaggcaacaaaagcaaaaatagacaagtgggactacatcaaactaaaaagcttctgcacagcaaaggaaacaatcaacagagtgaaaaggcaacctacggaatgggagaaaatatttgcaaaccatatatctgataaggggttaatatccaaaatatataaggaactcntacaactcaatagcaaaaaaacaaataacccgattnaaaaatgggcaaaggacctgaatagacatttctccaaagaagacatacaaatggccaacaggtatatgaaaagatgctcaacatca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 301 99.0 Highly correlated
2 ZNF248 76 99.0 Highly correlated
3 ZNF394 68 99.0 Highly correlated
4 ZNF680 66 28.9 Weakly correlated
5 ZNF317 55 99.0 Highly correlated
6 ZIM3 51 87.0 Moderately correlated
7 ZNF766 41 43.0 Weakly correlated
8 ZNF250 39 99.0 Highly correlated
9 ZNF705B 37 28.9 Weakly correlated
10 ZNF324 34 99.0 Highly correlated
11 ZNF2 30 99.0 Highly correlated
12 ZNF18 29 160.0 Weakly correlated
13 ZNF679 28 28.9 Weakly correlated
14 ZNF92 27 28.9 Weakly correlated
15 ZNF705D 25 28.9 Weakly correlated
16 ZNF723 25 15.2 Weakly correlated
17 ZFP37 21 99.0 Highly correlated
18 ZNF558 20 99.0 Highly correlated
19 ZNF84 20 99.0 Highly correlated
20 ZNF101 18 43.0 Weakly correlated
21 ZKSCAN1 17 160.0 Weakly correlated
22 ZNF140 17 99.0 Highly correlated
23 ZNF585A 15 99.0 Highly correlated
24 ZNF263 14 180.0 Weakly correlated
25 ZNF490 14 43.0 Weakly correlated
26 ZNF793 14 99.0 Highly correlated
27 ZNF8 14 99.0 Highly correlated
28 ZFP57 12 87.0 Moderately correlated
29 ZNF182 12 99.0 Highly correlated
30 ZNF251 12 94.0 Moderately correlated
31 ZNF471 12 94.0 Moderately correlated
32 ZNF506 11 28.9 Weakly correlated
33 ZNF534 11 19.6 Weakly correlated
34 ZNF583 11 99.0 Highly correlated
35 ZFP28 10 99.0 Highly correlated
36 ZFP69B 10 99.0 Highly correlated
37 ZNF440 10 28.9 Weakly correlated
38 ZNF133 9 99.0 Highly correlated
39 ZNF175 9 94.0 Moderately correlated
40 ZNF486 9 8.6 Weakly correlated
41 ZNF589 9 28.9 Weakly correlated
42 ZNF786 9 99.0 Highly correlated
43 ZNF445 8 99.0 Highly correlated
44 ZNF479 8 6.4 Weakly correlated
45 ZNF610 8 28.9 Weakly correlated
46 ZNF81 8 99.0 Highly correlated
47 ZKSCAN8 7 160.0 Weakly correlated
48 ZNF197 7 99.0 Highly correlated
49 ZNF257 7 0.0 Weakly correlated
50 ZNF274 7 99.0 Highly correlated
51 ZNF287 7 99.0 Highly correlated
52 ZNF441 7 43.0 Weakly correlated
53 ZNF485 6 94.0 Moderately correlated
54 ZNF585B 6 99.0 Highly correlated
55 ZNF677 6 99.0 Highly correlated
56 ZNF695 6 28.9 Weakly correlated
57 ZNF707 6 74.0 Weakly correlated
58 ZNF735 6 28.9 Weakly correlated
59 ZNF75D 6 94.0 Moderately correlated
60 ZNF879 6 99.0 Highly correlated
61 ZFP69 5 99.0 Highly correlated
62 ZNF10 5 99.0 Highly correlated
63 ZNF135 5 94.0 Moderately correlated
64 ZNF136 5 74.0 Weakly correlated
65 ZNF169 5 94.0 Moderately correlated
66 ZNF211 5 94.0 Moderately correlated
67 ZNF273 5 28.9 Weakly correlated
68 ZNF41 5 99.0 Highly correlated
69 ZNF454 5 99.0 Highly correlated
70 ZNF597 5 94.0 Moderately correlated
71 ZNF202 4 160.0 Weakly correlated
72 ZNF28 4 28.9 Weakly correlated
73 ZNF320 4 28.9 Weakly correlated
74 ZNF528 4 43.0 Weakly correlated
75 ZNF554 4 99.0 Highly correlated
76 ZNF701 4 28.9 Weakly correlated
77 ZNF792 4 94.0 Moderately correlated
78 ZFP90 3 99.0 Highly correlated
79 ZNF141 3 43.0 Weakly correlated
80 ZNF189 3 99.0 Highly correlated
81 ZNF264 3 99.0 Highly correlated
82 ZNF282 3 319.0 Weakly correlated
83 ZNF33A 3 99.0 Highly correlated
84 ZNF354A 3 99.0 Highly correlated
85 ZNF425 3 94.0 Moderately correlated
86 ZNF429 3 28.9 Weakly correlated
87 ZNF519 3 19.6 Weakly correlated
88 ZNF549 3 87.0 Moderately correlated
89 ZNF584 3 99.0 Highly correlated
90 ZNF641 3 99.0 Highly correlated
91 ZNF682 3 28.9 Weakly correlated
92 ZNF689 3 99.0 Highly correlated
93 ZNF823 3 43.0 Weakly correlated
94 ZNF160 2 74.0 Weakly correlated
95 ZNF234 2 99.0 Highly correlated
96 ZNF253 2 19.6 Weakly correlated
97 ZNF284 2 43.0 Weakly correlated
98 ZNF347 2 43.0 Weakly correlated
99 ZNF350 2 99.0 Highly correlated
100 ZNF354C 2 99.0 Highly correlated
101 ZNF500 2 160.0 Weakly correlated
102 ZNF510 2 99.0 Highly correlated
103 ZNF514 2 94.0 Moderately correlated
104 ZNF544 2 0.0 Weakly correlated
105 ZNF578 2 15.2 Weakly correlated
106 ZNF699 2 99.0 Highly correlated
107 ZNF729 2 8.6 Weakly correlated
108 ZNF778 2 74.0 Weakly correlated
109 ZNF808 2 19.6 Weakly correlated
110 ZNF816 2 28.9 Weakly correlated
111 ZFP14 1 99.0 Highly correlated
112 ZFP30 1 99.0 Highly correlated
113 ZKSCAN4 1 99.0 Highly correlated
114 ZNF12 1 99.0 Highly correlated
115 ZNF177 1 94.0 Moderately correlated
116 ZNF195 1 28.9 Weakly correlated
117 ZNF20 1 43.0 Weakly correlated
118 ZNF215 1 99.0 Highly correlated
119 ZNF222 1 43.0 Weakly correlated
120 ZNF224 1 69.0 Weakly correlated
121 ZNF225 1 74.0 Weakly correlated
122 ZNF229 1 99.0 Highly correlated
123 ZNF230 1 28.9 Weakly correlated
124 ZNF233 1 99.0 Highly correlated
125 ZNF267 1 43.0 Weakly correlated
126 ZNF268 1 94.0 Moderately correlated
127 ZNF26 1 99.0 Highly correlated
128 ZNF286A 1 160.0 Weakly correlated
129 ZNF30 1 94.0 Moderately correlated
130 ZNF343 1 74.0 Weakly correlated
131 ZNF416 1 43.0 Weakly correlated
132 ZNF420 1 94.0 Moderately correlated
133 ZNF426 1 87.0 Moderately correlated
134 ZNF433 1 43.0 Weakly correlated
135 ZNF443 1 19.6 Weakly correlated
136 ZNF461 1 99.0 Highly correlated
137 ZNF468 1 28.9 Weakly correlated
138 ZNF473 1 43.0 Weakly correlated
139 ZNF483 1 99.0 Highly correlated
140 ZNF487 1 28.9 Weakly correlated
141 ZNF529 1 99.0 Highly correlated
142 ZNF547 1 74.0 Weakly correlated
143 ZNF551 1 94.0 Moderately correlated
144 ZNF556 1 94.0 Moderately correlated
145 ZNF559 1 74.0 Weakly correlated
146 ZNF560 1 43.0 Weakly correlated
147 ZNF569 1 99.0 Highly correlated
148 ZNF570 1 99.0 Highly correlated
149 ZNF57 1 28.9 Weakly correlated
150 ZNF605 1 99.0 Highly correlated
151 ZNF607 1 43.0 Weakly correlated
152 ZNF627 1 74.0 Weakly correlated
153 ZNF649 1 28.9 Weakly correlated
154 ZNF658 1 99.0 Highly correlated
155 ZNF66 1 0.0 Weakly correlated
156 ZNF688 1 160.0 Weakly correlated
157 ZNF700 1 28.9 Weakly correlated
158 ZNF705E 1 0.0 Weakly correlated
159 ZNF717 1 0.0 Weakly correlated
160 ZNF718 1 19.6 Weakly correlated
161 ZNF726 1 28.9 Weakly correlated
162 ZNF727 1 19.6 Weakly correlated
163 ZNF728 1 19.6 Weakly correlated
164 ZNF736 1 43.0 Weakly correlated
165 ZNF747 1 43.0 Weakly correlated
166 ZNF763 1 15.2 Weakly correlated
167 ZNF772 1 94.0 Moderately correlated
168 ZNF77 1 87.0 Moderately correlated
169 ZNF780A 1 43.0 Weakly correlated
170 ZNF813 1 28.9 Weakly correlated
171 ZNF814 1 0.0 Weakly correlated
172 ZNF845 1 28.9 Weakly correlated
173 ZNF850 1 28.9 Weakly correlated
174 ZNF878 1 43.0 Weakly correlated
175 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF248 65 99.0 Highly correlated
2 ZNF382 49 99.0 Highly correlated
3 ZNF250 39 99.0 Highly correlated
4 ZIM3 32 87.0 Moderately correlated
5 ZNF324 21 99.0 Highly correlated
6 ZNF680 18 28.9 Weakly correlated
7 ZNF84 14 99.0 Highly correlated
8 ZNF723 13 15.2 Weakly correlated
9 ZNF585A 9 99.0 Highly correlated
10 ZNF490 8 43.0 Weakly correlated
11 ZNF101 8 43.0 Weakly correlated
12 ZNF81 8 99.0 Highly correlated
13 ZNF705B 8 28.9 Weakly correlated
14 ZNF92 7 28.9 Weakly correlated
15 ZFP28 6 99.0 Highly correlated
16 ZNF793 6 99.0 Highly correlated
17 ZNF8 6 99.0 Highly correlated
18 ZNF471 5 94.0 Moderately correlated
19 ZNF534 5 19.6 Weakly correlated
20 ZNF705D 5 28.9 Weakly correlated
21 ZNF140 5 99.0 Highly correlated
22 ZNF317 5 99.0 Highly correlated
23 ZNF558 5 99.0 Highly correlated
24 ZNF786 5 99.0 Highly correlated
25 ZNF879 5 99.0 Highly correlated
26 ZNF677 4 99.0 Highly correlated
27 ZFP69 4 99.0 Highly correlated
28 ZNF766 3 43.0 Weakly correlated
29 ZNF695 3 28.9 Weakly correlated
30 ZNF287 3 99.0 Highly correlated
31 ZNF10 3 99.0 Highly correlated
32 ZNF18 3 160.0 Weakly correlated
33 ZNF189 2 99.0 Highly correlated
34 ZNF479 2 6.4 Weakly correlated
35 ZNF585B 2 99.0 Highly correlated
36 ZNF701 2 28.9 Weakly correlated
37 ZNF500 2 160.0 Weakly correlated
38 ZNF141 2 43.0 Weakly correlated
39 ZFP90 2 99.0 Highly correlated
40 ZNF202 2 160.0 Weakly correlated
41 ZNF257 2 0.0 Weakly correlated
42 ZNF75D 1 94.0 Moderately correlated
43 ZKSCAN1 1 160.0 Weakly correlated
44 ZNF41 1 99.0 Highly correlated
45 ZNF251 1 94.0 Moderately correlated
46 ZNF197 1 99.0 Highly correlated
47 ZNF33A 1 99.0 Highly correlated
48 ZNF211 1 94.0 Moderately correlated
49 ZNF583 1 99.0 Highly correlated
50 ZFP57 1 87.0 Moderately correlated
51 ZNF273 1 28.9 Weakly correlated
52 ZFP14 1 99.0 Highly correlated
53 ZNF589 1 28.9 Weakly correlated
54 ZNF559 1 74.0 Weakly correlated
55 ZNF528 1 43.0 Weakly correlated
56 ZNF425 1 94.0 Moderately correlated
57 ZNF597 1 94.0 Moderately correlated
58 ZNF264 1 99.0 Highly correlated
59 ZNF717 1 0.0 Weakly correlated
60 ZNF747 1 43.0 Weakly correlated
61 ZNF792 1 94.0 Moderately correlated
62 ZNF66 1 0.0 Weakly correlated
63 ZNF394 1 99.0 Highly correlated
64 ZNF175 1 94.0 Moderately correlated
65 ZNF433 1 43.0 Weakly correlated
66 ZNF584 1 99.0 Highly correlated
67 ZNF679 1 28.9 Weakly correlated
68 ZNF486 1 8.6 Weakly correlated
69 ZNF816 1 28.9 Weakly correlated
70 ZNF823 1 43.0 Weakly correlated
71 ZNF485 1 94.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP28 99.0 Highly correlated
2 ZNF248 99.0 Highly correlated
3 ZNF250 99.0 Highly correlated
4 ZNF382 99.0 Highly correlated
5 ZNF490 43.0 Weakly correlated
6 ZNF680 28.9 Weakly correlated
7 ZNF793 99.0 Highly correlated
8 ZNF84 99.0 Highly correlated
9 ZNF8 99.0 Highly correlated
10 ZNF92 28.9 Weakly correlated