ZRdb KZFP & Repeats
...

LINE_L1M3F_5END

  • Name
    L1M3F_5END
  • Repbase
    L1M1B_5
  • Type
    LINE
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000243
Description :

ORF1 starts at pos ~818
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gagacttccggttccaaaatggcggcgtagaagcaagctggcttcactccccccccccacagaaaaccaaaaacaaatatacagcgccgagattatcaccagcaatatcccagaactcaaatatgaggatgagacagttcccggggccacagagaagtgaaaaaactccgagcagacggtaagagaatcggacttccatatccgcgacgcccctccccccaatctgcccggcaccaagcgcgcggaaaatttccccccgactcacggtttctacactggaaaaagtgagatcgaggtggacaaccagcttccccaccatcttgggttccctggcaggagacctgtccctgcctcaacccacgggaagcatcgcgagtgcctgaagggagaaatatccctgaggacagccagagacaaaggggggaggcgggactaccatccccagccctggaaactctgctctgtaactcggccaaaggagacgccaaatcagagtggctgttcagcagcaccacgctgtaggaggtncgttccacaggtcccctgggcacgaacccctagccagccttcccacactgccgggatatcccctttgggacctcccccattcgggacgggcagcgctccgatcgtttactagagccgaggcaaacctgggcttaaggcgccatctagtgccgaaaaggaggcagcgacctagcgggaaaaaaaaaaagaaantcaacaggtaaattacaaagaatctctaagcaaacatatccaataaaaaccaaaacaagccagacagagaagactggaataaataactaatccttcaatgcaaagacatagacgtacatccacaagaaacaacagcaaacagggaaccatgacctccccaaacggacaaagcaaggaaccagtgactgaccctaacgagacggcgatatgtgagctctctgaccaagaattcaaaatagcagttttaaggaaactcagtgatctccaagataacacagaaaagcaattcagaaatttatcagagaaatttaacaaagagattgaaataattttaaaaaatcaaacagaaatcttggaactgagaaatacatttgctgaactgaaaaattcattagaggctctcaacagcagaatggatcaagcagaggaaagaatcagtgagctcgaagacaggctatttgaaaatacacagtcagaggagaaaaaagaaaaaagaatgaaaaggaacgaagatcgcctacaagatatagaaaattacctcaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF136 78 74.0 Moderately correlated
2 ZNF160 78 74.0 Moderately correlated
3 ZNF382 70 99.0 Weakly correlated
4 ZIM3 41 87.0 Highly correlated
5 ZNF225 32 74.0 Moderately correlated
6 ZNF490 29 43.0 Weakly correlated
7 ZNF263 27 180.0 Weakly correlated
8 ZNF2 25 99.0 Weakly correlated
9 ZNF766 24 43.0 Weakly correlated
10 ZNF317 21 99.0 Weakly correlated
11 ZNF680 19 28.9 Weakly correlated
12 ZNF665 19 28.9 Weakly correlated
13 ZNF394 17 99.0 Weakly correlated
14 ZFP37 16 99.0 Weakly correlated
15 ZNF92 15 28.9 Weakly correlated
16 ZNF324 14 99.0 Weakly correlated
17 ZNF230 14 28.9 Weakly correlated
18 ZFP69B 12 99.0 Weakly correlated
19 ZKSCAN1 12 160.0 Weakly correlated
20 ZNF18 10 160.0 Weakly correlated
21 ZNF534 9 19.6 Weakly correlated
22 ZNF101 9 43.0 Weakly correlated
23 ZNF723 9 15.2 Weakly correlated
24 ZNF679 9 28.9 Weakly correlated
25 ZNF677 8 99.0 Weakly correlated
26 ZNF547 8 74.0 Moderately correlated
27 ZNF479 8 6.4 Weakly correlated
28 ZNF558 8 99.0 Weakly correlated
29 ZNF641 8 99.0 Weakly correlated
30 ZNF320 8 28.9 Weakly correlated
31 ZNF705B 8 28.9 Weakly correlated
32 ZNF793 8 99.0 Weakly correlated
33 ZNF528 7 43.0 Weakly correlated
34 ZNF133 7 99.0 Weakly correlated
35 ZNF175 7 94.0 Weakly correlated
36 ZNF610 7 28.9 Weakly correlated
37 ZNF471 7 94.0 Weakly correlated
38 ZNF140 6 99.0 Weakly correlated
39 ZNF75D 6 94.0 Weakly correlated
40 ZNF701 5 28.9 Weakly correlated
41 ZNF549 5 87.0 Highly correlated
42 ZNF287 4 99.0 Weakly correlated
43 ZNF248 4 99.0 Weakly correlated
44 ZNF705D 4 28.9 Weakly correlated
45 ZNF554 3 99.0 Weakly correlated
46 ZNF584 3 99.0 Weakly correlated
47 ZNF585B 3 99.0 Weakly correlated
48 ZNF597 3 94.0 Weakly correlated
49 ZNF222 3 43.0 Weakly correlated
50 ZNF8 3 99.0 Weakly correlated
51 ZNF695 3 28.9 Weakly correlated
52 ZNF284 3 43.0 Weakly correlated
53 ZNF169 3 94.0 Weakly correlated
54 ZNF274 3 99.0 Weakly correlated
55 ZNF182 3 99.0 Weakly correlated
56 ZNF257 3 0.0 Weakly correlated
57 ZNF682 2 28.9 Weakly correlated
58 ZNF197 2 99.0 Weakly correlated
59 ZNF264 2 99.0 Weakly correlated
60 ZNF707 2 74.0 Moderately correlated
61 ZNF735 2 28.9 Weakly correlated
62 ZNF786 2 99.0 Weakly correlated
63 ZNF792 2 94.0 Weakly correlated
64 ZNF251 2 94.0 Weakly correlated
65 ZNF816 2 28.9 Weakly correlated
66 ZNF84 2 99.0 Weakly correlated
67 ZNF91 2 6.0 Weakly correlated
68 ZNF519 2 19.6 Weakly correlated
69 ZNF354A 2 99.0 Weakly correlated
70 ZNF589 2 28.9 Weakly correlated
71 ZNF157 2 99.0 Weakly correlated
72 ZNF30 2 94.0 Weakly correlated
73 ZNF253 1 19.6 Weakly correlated
74 ZNF506 1 28.9 Weakly correlated
75 ZNF483 1 99.0 Weakly correlated
76 ZNF189 1 99.0 Weakly correlated
77 ZNF878 1 43.0 Weakly correlated
78 ZNF440 1 28.9 Weakly correlated
79 ZNF845 1 28.9 Weakly correlated
80 ZNF823 1 43.0 Weakly correlated
81 ZNF557 1 15.2 Weakly correlated
82 ZNF808 1 19.6 Weakly correlated
83 ZNF425 1 94.0 Weakly correlated
84 ZNF560 1 43.0 Weakly correlated
85 ZNF583 1 99.0 Weakly correlated
86 ZNF141 1 43.0 Weakly correlated
87 ZNF607 1 43.0 Weakly correlated
88 ZNF273 1 28.9 Weakly correlated
89 ZNF347 1 43.0 Weakly correlated
90 ZNF135 1 94.0 Weakly correlated
91 ZNF669 1 43.0 Weakly correlated
92 ZNF28 1 28.9 Weakly correlated
93 ZNF17 1 69.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF160 75 74.0 Moderately correlated
2 ZNF136 60 74.0 Moderately correlated
3 ZNF490 26 43.0 Weakly correlated
4 ZIM3 25 87.0 Highly correlated
5 ZNF225 18 74.0 Moderately correlated
6 ZNF2 14 99.0 Weakly correlated
7 ZNF677 8 99.0 Weakly correlated
8 ZNF793 7 99.0 Weakly correlated
9 ZNF317 7 99.0 Weakly correlated
10 ZNF534 7 19.6 Weakly correlated
11 ZNF471 6 94.0 Weakly correlated
12 ZNF382 5 99.0 Weakly correlated
13 ZNF263 5 180.0 Weakly correlated
14 ZNF92 4 28.9 Weakly correlated
15 ZNF133 4 99.0 Weakly correlated
16 ZNF680 4 28.9 Weakly correlated
17 ZNF248 3 99.0 Weakly correlated
18 ZNF723 3 15.2 Weakly correlated
19 ZNF75D 3 94.0 Weakly correlated
20 ZNF695 3 28.9 Weakly correlated
21 ZNF257 3 0.0 Weakly correlated
22 ZNF287 3 99.0 Weakly correlated
23 ZNF679 3 28.9 Weakly correlated
24 ZNF558 3 99.0 Weakly correlated
25 ZFP37 2 99.0 Weakly correlated
26 ZNF324 2 99.0 Weakly correlated
27 ZNF320 2 28.9 Weakly correlated
28 ZNF766 2 43.0 Weakly correlated
29 ZNF84 2 99.0 Weakly correlated
30 ZNF394 2 99.0 Weakly correlated
31 ZNF101 2 43.0 Weakly correlated
32 ZNF169 2 94.0 Weakly correlated
33 ZNF597 2 94.0 Weakly correlated
34 ZNF479 2 6.4 Weakly correlated
35 ZNF284 1 43.0 Weakly correlated
36 ZFP69B 1 99.0 Weakly correlated
37 ZNF705B 1 28.9 Weakly correlated
38 ZNF707 1 74.0 Moderately correlated
39 ZNF354A 1 99.0 Weakly correlated
40 ZNF823 1 43.0 Weakly correlated
41 ZNF641 1 99.0 Weakly correlated
42 ZNF264 1 99.0 Weakly correlated
43 ZNF701 1 28.9 Weakly correlated
44 ZNF560 1 43.0 Weakly correlated
45 ZNF140 1 99.0 Weakly correlated
46 ZNF665 1 28.9 Weakly correlated
47 ZNF792 1 94.0 Weakly correlated
48 ZNF549 1 87.0 Highly correlated
49 ZNF251 1 94.0 Weakly correlated
50 ZNF28 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF2 99.0 Weakly correlated
2 ZNF317 99.0 Weakly correlated
3 ZNF471 94.0 Weakly correlated
4 ZNF490 43.0 Weakly correlated
5 ZNF793 99.0 Weakly correlated