ZRdb KZFP & Repeats
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LINE_L1M3E_5END

  • Name
    L1M3E_5END
  • Repbase
    L1MA9_5
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000242
Description :

Contains multiple ~30 bp tandem duplications in the promoter region.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gacgtcagcaagatggcggaataggactttccagcgctcgtcctcacagaaacatcaatttgaacaactatccacgcacgaaaataccttcacaagagctaaggaaaccaggtgagagattacagcacctgggtgtagcacagaaataagaaaagacgcattgaagagggtaggaaggacagttttacattacccgcgtcacccctcccccaaccccaggcagcacagcgtggagagagataccctccgcntgggggaaggagagggaagtgagcaccggactttgcctcggaccccaancaccgggcccgccccagtaaaacccagcgccgggcaggcccccacggccccagactccaggccggtacccgcggactgagccgcgccagatcccacagcccaggctccaggcctgcccggcggactcagtctccaggcccgccccagcgccaggccgaccccagtgccccaggctccagaccggccccagcgccaggccggccccagcggccccaggctccaggccgnccccagcgccaggccggcccccgcggccccaggcttcaggcccgccccagcaccaggccggcccccgcagccctagncatcaggccagcacccgcggacccagcctccaggccggcccctgcggacacaggctccaggcctacccagcgccaggccagcccctgcggccccaggctccaggcccaccccaggttccagaccagcccagagccaggtcggcccacgtagccccaggcttcaggcccgccccagcgccaggtcagcacccctggcctcagaccncgncccggtaccaggccggcacccgcggacacaggctccaggcctgcccagtgccaggccggtccctgcggccccaccctccaggnccggcccctgcggccccacgctccagcagacccagggtccaggcccgtcccagtagaccccagcgctaggccggcccccacggacccaggctccaggaccgcccctgtggacccaggtcccaggccggcccccgcggccccaggacccaggccagccctcgnagacctagcctccaggccagccctgcagacccagcctccaggccggcncccgcggacccaggctccaggccatcccccaggctccaggccagccccagtggctccaggcaccaggccagcncccgcggacccaggctccagaccggccccacgctaccccagcaccaggccagccccaggctccaggccggtccccgtggcccaggctccagtggacccagggtccaggcctgctccagcagacccagggtccaggcccaccccagtagaccccggcgccaggccggcccccgcggacccaggctccaggaccacccctgcagacccaggctccaggccagcccccgcggaccaggatccanggcccannnccncagncgcaggctccaggcccgccccagcgccaggccagcccccatggactcaggctccaggcccgtcccagtggacccaggcnccaggcccatcccagcgccaggccggcccctgcagactcaggctcaaggcccaccccagcgccaggtcagcccctgtggacccaggcttcaggccggcccccgcggacncaggctccaggcccgccctcgtggacccaggctccaggcccacccccgcggacccaatcaacaggtccacccagtggatccaggctccaggcccaaccccgcggacccaggcgccaggcccgccacctgctgacccaggcaccaggccagcctgcccgaggactccagcagcaagcccgcccgcggaccacgccagacggcctgcccagaatctctggatgactggtgaagggctttcccngacaaagccagtctgcaaagactggaataagtncctacttcttcaaatgcgcagacaccaacgcaaggcccaaggatcacgaanaatcagggaaacatgacaccaccaaaggaacaaaataaagcgccagtaaccgaccctaaagaaatggagatntacgaactgcctgacaaagaattcaaaataatcgttttaaggaagctcagtgagctncaagagaacacagataaacaactaaacgaaatcag
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF471 73 94.0 Moderately correlated
2 ZNF382 65 99.0 Highly correlated
3 ZNF160 55 74.0 Weakly correlated
4 ZIM3 27 87.0 Moderately correlated
5 ZNF136 27 74.0 Weakly correlated
6 ZNF263 19 180.0 Weakly correlated
7 ZNF92 16 28.9 Weakly correlated
8 ZNF2 15 99.0 Highly correlated
9 ZNF394 13 99.0 Highly correlated
10 ZFP37 12 99.0 Highly correlated
11 ZNF490 11 43.0 Weakly correlated
12 ZNF793 10 99.0 Highly correlated
13 ZNF274 10 99.0 Highly correlated
14 ZNF317 9 99.0 Highly correlated
15 ZNF679 9 28.9 Weakly correlated
16 ZNF766 8 43.0 Weakly correlated
17 ZKSCAN1 8 160.0 Weakly correlated
18 ZNF324 8 99.0 Highly correlated
19 ZNF101 8 43.0 Weakly correlated
20 ZNF479 7 6.4 Weakly correlated
21 ZNF18 6 160.0 Weakly correlated
22 ZFP69B 6 99.0 Highly correlated
23 ZNF506 6 28.9 Weakly correlated
24 ZNF114 6 28.9 Weakly correlated
25 ZNF483 5 99.0 Highly correlated
26 ZNF792 5 94.0 Moderately correlated
27 ZNF680 5 28.9 Weakly correlated
28 ZNF558 4 99.0 Highly correlated
29 ZNF701 4 28.9 Weakly correlated
30 ZNF248 4 99.0 Highly correlated
31 ZNF610 4 28.9 Weakly correlated
32 ZNF723 4 15.2 Weakly correlated
33 ZNF584 3 99.0 Highly correlated
34 ZNF197 3 99.0 Highly correlated
35 ZNF486 3 8.6 Weakly correlated
36 ZNF230 3 28.9 Weakly correlated
37 ZNF250 3 99.0 Highly correlated
38 ZFP57 3 87.0 Moderately correlated
39 ZNF334 3 99.0 Highly correlated
40 ZNF30 3 94.0 Moderately correlated
41 ZNF589 2 28.9 Weakly correlated
42 ZNF560 2 43.0 Weakly correlated
43 ZNF75A 2 94.0 Moderately correlated
44 ZNF585A 2 99.0 Highly correlated
45 ZNF705D 2 28.9 Weakly correlated
46 ZNF705B 2 28.9 Weakly correlated
47 ZNF320 2 28.9 Weakly correlated
48 ZNF287 2 99.0 Highly correlated
49 ZNF251 2 94.0 Moderately correlated
50 ZNF224 2 69.0 Weakly correlated
51 ZNF8 2 99.0 Highly correlated
52 ZNF778 1 74.0 Weakly correlated
53 ZNF780A 1 43.0 Weakly correlated
54 ZNF808 1 19.6 Weakly correlated
55 ZNF765 1 8.6 Weakly correlated
56 ZNF816 1 28.9 Weakly correlated
57 ZNF84 1 99.0 Highly correlated
58 ZNF85 1 28.9 Weakly correlated
59 ZNF735 1 28.9 Weakly correlated
60 ZNF879 1 99.0 Highly correlated
61 ZNF133 1 99.0 Highly correlated
62 ZFP14 1 99.0 Highly correlated
63 ZNF432 1 99.0 Highly correlated
64 ZNF140 1 99.0 Highly correlated
65 ZNF182 1 99.0 Highly correlated
66 ZNF189 1 99.0 Highly correlated
67 ZNF284 1 43.0 Weakly correlated
68 ZNF28 1 28.9 Weakly correlated
69 ZNF34 1 99.0 Highly correlated
70 ZFP82 1 99.0 Highly correlated
71 ZNF425 1 94.0 Moderately correlated
72 ZNF695 1 28.9 Weakly correlated
73 ZNF485 1 94.0 Moderately correlated
74 ZNF549 1 87.0 Moderately correlated
75 ZNF554 1 99.0 Highly correlated
76 ZNF563 1 28.9 Weakly correlated
77 ZNF57 1 28.9 Weakly correlated
78 ZNF641 1 99.0 Highly correlated
79 ZNF66 1 0.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF471 65 94.0 Moderately correlated
2 ZNF160 52 74.0 Weakly correlated
3 ZNF136 24 74.0 Weakly correlated
4 ZIM3 12 87.0 Moderately correlated
5 ZNF490 9 43.0 Weakly correlated
6 ZNF382 9 99.0 Highly correlated
7 ZNF479 4 6.4 Weakly correlated
8 ZNF680 4 28.9 Weakly correlated
9 ZNF506 4 28.9 Weakly correlated
10 ZNF2 3 99.0 Highly correlated
11 ZNF793 3 99.0 Highly correlated
12 ZNF248 3 99.0 Highly correlated
13 ZNF585A 2 99.0 Highly correlated
14 ZNF101 2 43.0 Weakly correlated
15 ZNF287 1 99.0 Highly correlated
16 ZNF735 1 28.9 Weakly correlated
17 ZNF317 1 99.0 Highly correlated
18 ZNF324 1 99.0 Highly correlated
19 ZNF334 1 99.0 Highly correlated
20 ZNF695 1 28.9 Weakly correlated
21 ZNF263 1 180.0 Weakly correlated
22 ZNF274 1 99.0 Highly correlated
23 ZNF879 1 99.0 Highly correlated
24 ZNF792 1 94.0 Moderately correlated
25 ZNF765 1 8.6 Weakly correlated
26 ZFP14 1 99.0 Highly correlated
27 ZNF723 1 15.2 Weakly correlated
28 ZNF485 1 94.0 Moderately correlated
29 ZNF84 1 99.0 Highly correlated
30 ZNF250 1 99.0 Highly correlated
31 ZNF140 1 99.0 Highly correlated
32 ZFP82 1 99.0 Highly correlated
33 ZFP69B 1 99.0 Highly correlated
34 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF471 94.0 Moderately correlated
2 ZNF490 43.0 Weakly correlated