ZRdb KZFP & Repeats
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LINE_L1M3D_5END

  • Name
    L1M3D_5END
  • Repbase
    L1M3D_5
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000240
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gagtgacgtcagcaagatggcggaataggaagccccggaccctccttccccccacggacacaccgattcaacaacaatncacggaaaattccctttgtgagaaatccagaaaccagttgagaggctcctgcaccccgggcgagcgcgaaaccagacccacatcgaagccggtaggaaaattcgngacaccctctcgccanagtccctncccccggcacagcgccgtacgatcggaaggaaaaaacccccagctcccggcttctcccnggggagggaaagagttggnccgcgcgtccaacgccccgacttttccgaggggctgcccagaggactggcttctgtctcgcctgtctcggagcgctgacgggnccggcatantctagncgcctgggggagaacagagacggcggtttgggctggtagacgccatagctcctcnccccngctcagcacagagcgagcggacgaaaanccccagctcccagcttctccctggggagggaaagagttgaatggactgnaaaacaganttgnatggngcatccaacgntccagctttctgggagtgcccgaggaactggttncgtttcaacttgtctcgnngcgctgataggacccggcatactctagacgcccggnggccgcnaagaacaaaaancaggttggactagcacgaaggtttgagaggcccccagaatctctggccgggctgattggtgaaggtcttctcctgtacgaagccagtccgtaaagactgggagaggtggctgttttntctaatgcgcagataccaacacaaagagtcaaggaanacgaagaaacagggaaacatgncccaancaaaggaacaaaataaatctccagaaaccgaccctaangaaacggagntatatganttacctgacaaagaattcaaaataaccgtcntaaagatgctcatgaanaacatgataaagatgctcancgagatcaggaaaacaatgcatgaacaaaatgagaatntcaacaaagagatagaaaatattaaaaagnaccaaacagaaattntggagctgaagaatacaataactgaactgaaaaattcactagaggggttcaacagcagactngatcaagcagaagaaagaatcagcgaactcgaagacaggtcatttgaaattatccagtcagaggagcaaaaagaaaaaagaatgaaaaagagtgaagaaagcctaagggacttatgggacaccatcaagcggaccaatatacgcattatgggagtcccagaaggagaagagagagagaaagggncagaaagcttatttaaagaaataatggccgaaaacttcccaaatctggggaaggaaatggacatccagatccaagaagccca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF160 24 74.0 Weakly correlated
2 ZNF382 14 99.0 Highly correlated
3 ZNF793 13 99.0 Highly correlated
4 ZNF471 11 94.0 Moderately correlated
5 ZNF136 9 74.0 Weakly correlated
6 ZNF680 8 28.9 Weakly correlated
7 ZNF766 7 43.0 Weakly correlated
8 ZIM3 7 87.0 Moderately correlated
9 ZNF490 5 43.0 Weakly correlated
10 ZNF723 4 15.2 Weakly correlated
11 ZNF705D 4 28.9 Weakly correlated
12 ZNF705B 4 28.9 Weakly correlated
13 ZNF679 4 28.9 Weakly correlated
14 ZNF534 4 19.6 Weakly correlated
15 ZNF320 4 28.9 Weakly correlated
16 ZNF394 4 99.0 Highly correlated
17 ZNF92 3 28.9 Weakly correlated
18 ZFP37 2 99.0 Highly correlated
19 ZNF558 2 99.0 Highly correlated
20 ZNF610 2 28.9 Weakly correlated
21 ZNF263 1 180.0 Weakly correlated
22 ZNF8 1 99.0 Highly correlated
23 ZNF808 1 19.6 Weakly correlated
24 ZFP82 1 99.0 Highly correlated
25 ZNF786 1 99.0 Highly correlated
26 ZNF101 1 43.0 Weakly correlated
27 ZNF133 1 99.0 Highly correlated
28 ZNF175 1 94.0 Moderately correlated
29 ZNF250 1 99.0 Highly correlated
30 ZNF700 1 28.9 Weakly correlated
31 ZNF257 1 0.0 Weakly correlated
32 ZNF33A 1 99.0 Highly correlated
33 ZNF561 1 43.0 Weakly correlated
34 ZNF273 1 28.9 Weakly correlated
35 ZNF506 1 28.9 Weakly correlated
36 ZNF317 1 99.0 Highly correlated
37 ZNF485 1 94.0 Moderately correlated
38 ZNF479 1 6.4 Weakly correlated
39 ZNF324 1 99.0 Highly correlated
40 ZNF441 1 43.0 Weakly correlated
41 ZNF337 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF160 22 74.0 Weakly correlated
2 ZNF471 9 94.0 Moderately correlated
3 ZNF136 7 74.0 Weakly correlated
4 ZNF793 6 99.0 Highly correlated
5 ZNF680 4 28.9 Weakly correlated
6 ZIM3 4 87.0 Moderately correlated
7 ZNF382 3 99.0 Highly correlated
8 ZNF490 3 43.0 Weakly correlated
9 ZNF534 3 19.6 Weakly correlated
10 ZNF723 2 15.2 Weakly correlated
11 ZNF320 1 28.9 Weakly correlated
12 ZNF257 1 0.0 Weakly correlated
13 ZNF324 1 99.0 Highly correlated
14 ZNF766 1 43.0 Weakly correlated
15 ZNF558 1 99.0 Highly correlated
16 ZNF337 1 43.0 Weakly correlated
17 ZNF561 1 43.0 Weakly correlated
18 ZNF33A 1 99.0 Highly correlated
19 ZNF101 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF471 94.0 Moderately correlated