ZRdb KZFP & Repeats
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LINE_L1M3DE_5END

  • Name
    L1M3DE_5END
  • Repbase
    L1M3DE_5
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000241
Description :

ORF1 starts at pos. ~1562
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
cttggctcttaattcaccaactctgggagcggaggggattagacatacgagtctctctagaccacaggaaaaaggcggtgttttatacgggcgcgcaagcacttccaggggcttcatcccccgggagcagtgcagagaaggggctnaaaaacgcagctccctgtttctccccggaaggggtttacgacacactcttccagcggctacttggcggcctggcttctaactaacttgcatcggggagttaaaggggcagacaaatantagcctnccggcagcctgaaaagnaggtnggcactccccgngccttcttccccggctcgctccagcgataactccaggcctatnaattcctcctggaaggagtttgtccacacatcgagcgccccaacttttacagcttccacccgagggactgcatcctaaacctcctagctctgggagcagaggggactaggcatatgcgagtctccctagaccacagaaaaaagnggcggttttanacgggcgcgcaagcacttccaggggcttcatcccccgggagcagtgcagagaaggggctnaaaaaacgcagctcccagtttctccctggaaggggtttgtgccacacatnnagcgccccaacttttacagctnccgcccgagggnctggctcctaaatcacctagctctgggagcaaagggactaggcatncgcgagtctccctagaccacagaacaaagaggcggttttaaacgggcgcgcgagcacttccaggggctacatcccctnggancagtgcagaaaagggcnagaacgcgcagctcccagtttctccccggaaggggtttgccgcacactcttccagcggctacttganggcctggcttctaactagcctgcatcngggagctaacggggcagacaaacaagtagccctccggcagcctgagcgagagctcggcacttcccgngccttctcccccggctcgctccagcgataaatccaggtctacngattctccctggaaggagtttgtccacgcaccgagcgccncaacttttacagctcccacccaagggactgnctcctnaatcacctagctctgggagtcgacggggctctgcattcctgagtctccctagaccacagagaacaaagaggtggntntacaacgggcncacttccagcagctatctccccaggatcagagngtgcagcctgaacgngagtacaggcatttgccacagatcctctccccggcttagtgcagagngagtgggagataaacncccgctctcagcttctccntgagganagaaggaactggaacacacatccaacaccccaacctttccagctgcatctnaagggnctggcttctatctcacctgtctcggggcactgacaggacntggcacatcctaanctccngggggccactaagaacaaagacagcagtttggacaagcacaaagatttgagaggcaccttagaatctctggccgggctgattggtgaggnccttctcctacacgaggccagtctganaagactgggagaggtggttgtcttatctaatgcgcagaaaccaacacagagagtcaaggaaaatgaagaaacagggaaatatgttccaaacaaaagaacaagataaatctccagaaaccgaccctaatgaaatggagatatgtgatttacccgacagagaattcaaaataacggtcataaagatgctcaccgaggtcaggagagcaatgcangaacaaantgagaatttcaacaaagagatagaaaatattaaaaagtaccaaacagaaatcatagagctgaagaatacaataactgaactgaaaaattcaatagaggggttcaacagcagactagatcaagcagaagaaaggatcagcgaactcgaagacaggtcactggaaatcatccaatctgaggagcaaaaagaaaaaaaaatgaaaaagagtgaaganagcttaagggacttatgggacaccatcaagcggaacaacatacgcattatcggngtnccagaaggagaagagaaaaaggagaaaagggncagaaagcntattcaaagaaataatggcngaaaacttcccaagtctggggaaggaaataganatccagatccaggaagccca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF471 30 94.0 Moderately correlated
2 ZNF136 23 74.0 Weakly correlated
3 ZNF160 22 74.0 Weakly correlated
4 ZIM3 9 87.0 Moderately correlated
5 ZNF490 9 43.0 Weakly correlated
6 ZNF382 9 99.0 Highly correlated
7 ZNF793 8 99.0 Highly correlated
8 ZNF679 8 28.9 Weakly correlated
9 ZNF317 8 99.0 Highly correlated
10 ZNF680 6 28.9 Weakly correlated
11 ZNF263 4 180.0 Weakly correlated
12 ZNF92 3 28.9 Weakly correlated
13 ZNF534 3 19.6 Weakly correlated
14 ZNF337 3 43.0 Weakly correlated
15 ZNF394 2 99.0 Highly correlated
16 ZNF879 2 99.0 Highly correlated
17 ZNF479 2 6.4 Weakly correlated
18 ZNF486 2 8.6 Weakly correlated
19 ZNF766 2 43.0 Weakly correlated
20 ZNF723 2 15.2 Weakly correlated
21 ZNF559 2 74.0 Weakly correlated
22 ZNF585B 2 99.0 Highly correlated
23 ZNF610 2 28.9 Weakly correlated
24 ZFP28 1 99.0 Highly correlated
25 ZNF101 1 43.0 Weakly correlated
26 ZNF707 1 74.0 Weakly correlated
27 ZNF133 1 99.0 Highly correlated
28 ZNF175 1 94.0 Moderately correlated
29 ZNF613 1 99.0 Highly correlated
30 ZNF597 1 94.0 Moderately correlated
31 ZNF549 1 87.0 Moderately correlated
32 ZNF182 1 99.0 Highly correlated
33 ZNF528 1 43.0 Weakly correlated
34 ZNF250 1 99.0 Highly correlated
35 ZNF485 1 94.0 Moderately correlated
36 ZNF274 1 99.0 Highly correlated
37 ZNF2 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF471 24 94.0 Moderately correlated
2 ZNF160 21 74.0 Weakly correlated
3 ZNF136 16 74.0 Weakly correlated
4 ZNF490 9 43.0 Weakly correlated
5 ZIM3 6 87.0 Moderately correlated
6 ZNF793 5 99.0 Highly correlated
7 ZNF680 4 28.9 Weakly correlated
8 ZNF317 4 99.0 Highly correlated
9 ZNF534 3 19.6 Weakly correlated
10 ZNF337 3 43.0 Weakly correlated
11 ZNF382 3 99.0 Highly correlated
12 ZNF263 2 180.0 Weakly correlated
13 ZNF723 2 15.2 Weakly correlated
14 ZNF250 1 99.0 Highly correlated
15 ZNF248 1 99.0 Highly correlated
16 ZNF485 1 94.0 Moderately correlated
17 ZNF679 1 28.9 Weakly correlated
18 ZNF707 1 74.0 Weakly correlated
19 ZNF479 1 6.4 Weakly correlated
20 ZNF879 1 99.0 Highly correlated
21 ZNF133 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF471 94.0 Moderately correlated