ZRdb KZFP & Repeats
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LINE_L1M3C_5END

  • Name
    L1M3C_5END
  • Repbase
    L1M3C_5
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000239
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gagtgacgtcagcaagatggcggaataggagntttcagccctatccccccacagaaacaccgattttgacaaccacccacggacgagagtacctttgtgggagtccgggagtccagcggagaagttccagcacaccgttggagcaaaaaatccgagaatagacgcattgaagagggtaagaagaacagtttcactttacccgcgtcacccctcccccaaggcggcacagctcagtgccaagagagaccccctcggcccgcgatttctcccacgggggaaagtgagagcgtagtgagtgagcgcccggctcccccagccgtgcgggacgctgcccaagaggcccacttctttctcgccccacccagaatactgaggngatcggcacggctgagtggttgggagaggctgggagcagggaagagaggntggggactcacagcaaccagggcncggaactcaacaaagggccgcggatcctactaaccgcttcgcggactccatcaggaagcccgcccacgagccgcttgggacgcctcgcctgcggacccccccaactggcccacgggcgcccccaacgctccgcgcgcctcacccctnnctccggcatggctcccaagcgcgcccccgcggacggcgagtgcgagcctctgcagatggctcgcgagcacgcgcagacagccggctcgactctgcgggattgggagaaggcacacaaacttgagcatttcagggcaccgccctagggaaaacaaacgggaggctctcagcacccggcctggctttgcgggatcgagagaaggcatacaatcttatcngcacccggcctggctttgcgggatcgagagaaggcacacaatcctaagacttncctcctcctcaagagggaacaagaggagtggagcgggcgcatccatagaaaaggtctgagaganccccagaatctctagccgggctgactggtgaaggtctttccctnccgaagccagtccgtaaagactggaagaggtgnctgcttcttcaaatgcgcagacancaacgcaaggctacaaggaacacgaagaatcagggaaacatgacaccaccaaaggaacanaataaanctccagtaaccgaccctaaagaaatggagatctacgaattgcctgacaaagaattcaaaataatcgtcttaaagaagctcagtgagctacaagagaacacagatagacaactnaacgaaatcaggaaaacaatacatgaacaaaatgagaagttcaacaaagagatagaaaccataaaaaagaaccaaacagaaattctggagctgaagaatacaatgactgaactgaaaaatncaatagagagcttcaacagcagactcgatcaagcagaagaaagaatcagcgaactcgaagacaggtcatttgaaattatccagtcagaggagcaaaaaaaaaaaaaatgaaaaagagtgaagaaagcctacgggacttatgggacaccatcaagcgaaccaatatacgcattatgggagtcccagaaggagaagagagagagaaaggggcagaaagcttatttaaagaaataatggcngaaaacttcccaaatctggggagaganatgaacatccagatncangaagccca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF160 120 74.0 Weakly correlated
2 ZNF471 108 94.0 Moderately correlated
3 ZNF382 27 99.0 Highly correlated
4 ZNF92 26 28.9 Weakly correlated
5 ZNF793 25 99.0 Highly correlated
6 ZIM3 24 87.0 Moderately correlated
7 ZNF766 23 43.0 Weakly correlated
8 ZNF136 21 74.0 Weakly correlated
9 ZNF680 20 28.9 Weakly correlated
10 ZNF263 19 180.0 Weakly correlated
11 ZNF490 17 43.0 Weakly correlated
12 ZNF317 17 99.0 Highly correlated
13 ZKSCAN1 10 160.0 Weakly correlated
14 ZNF558 10 99.0 Highly correlated
15 ZNF2 10 99.0 Highly correlated
16 ZNF394 8 99.0 Highly correlated
17 ZNF274 8 99.0 Highly correlated
18 ZFP37 7 99.0 Highly correlated
19 ZFP57 7 87.0 Moderately correlated
20 ZNF75D 6 94.0 Moderately correlated
21 ZNF479 6 6.4 Weakly correlated
22 ZNF679 6 28.9 Weakly correlated
23 ZNF133 5 99.0 Highly correlated
24 ZNF589 5 28.9 Weakly correlated
25 ZNF486 4 8.6 Weakly correlated
26 ZNF197 4 99.0 Highly correlated
27 ZNF554 4 99.0 Highly correlated
28 ZNF324 4 99.0 Highly correlated
29 ZNF175 4 94.0 Moderately correlated
30 ZNF182 4 99.0 Highly correlated
31 ZNF682 4 28.9 Weakly correlated
32 ZNF585B 3 99.0 Highly correlated
33 ZNF879 3 99.0 Highly correlated
34 ZNF610 3 28.9 Weakly correlated
35 ZNF101 3 43.0 Weakly correlated
36 ZNF705B 3 28.9 Weakly correlated
37 ZNF705D 2 28.9 Weakly correlated
38 ZNF695 2 28.9 Weakly correlated
39 ZNF547 2 74.0 Weakly correlated
40 ZNF528 2 43.0 Weakly correlated
41 ZNF677 2 99.0 Highly correlated
42 ZNF584 2 99.0 Highly correlated
43 ZNF723 2 15.2 Weakly correlated
44 ZNF597 2 94.0 Moderately correlated
45 ZFP28 2 99.0 Highly correlated
46 ZNF248 2 99.0 Highly correlated
47 ZNF43 2 43.0 Weakly correlated
48 ZNF429 2 28.9 Weakly correlated
49 ZNF18 2 160.0 Weakly correlated
50 ZNF264 2 99.0 Highly correlated
51 ZNF157 2 99.0 Highly correlated
52 ZNF354A 2 99.0 Highly correlated
53 ZNF33A 2 99.0 Highly correlated
54 ZNF28 2 28.9 Weakly correlated
55 ZNF169 2 94.0 Moderately correlated
56 ZNF549 1 87.0 Moderately correlated
57 ZNF735 1 28.9 Weakly correlated
58 ZNF84 1 99.0 Highly correlated
59 ZNF816 1 28.9 Weakly correlated
60 ZNF701 1 28.9 Weakly correlated
61 ZNF791 1 87.0 Moderately correlated
62 ZNF780A 1 43.0 Weakly correlated
63 ZNF707 1 74.0 Weakly correlated
64 ZFP90 1 99.0 Highly correlated
65 ZNF765 1 8.6 Weakly correlated
66 ZNF730 1 19.6 Weakly correlated
67 ZNF483 1 99.0 Highly correlated
68 ZNF225 1 74.0 Weakly correlated
69 ZNF235 1 99.0 Highly correlated
70 ZNF251 1 94.0 Moderately correlated
71 ZNF257 1 0.0 Weakly correlated
72 ZNF337 1 43.0 Weakly correlated
73 ZNF140 1 99.0 Highly correlated
74 ZNF41 1 99.0 Highly correlated
75 ZNF441 1 43.0 Weakly correlated
76 ZNF480 1 43.0 Weakly correlated
77 ZKSCAN8 1 160.0 Weakly correlated
78 ZNF10 1 99.0 Highly correlated
79 ZNF506 1 28.9 Weakly correlated
80 ZNF519 1 19.6 Weakly correlated
81 ZNF534 1 19.6 Weakly correlated
82 ZNF563 1 28.9 Weakly correlated
83 ZNF571 1 99.0 Highly correlated
84 ZNF585A 1 99.0 Highly correlated
85 ZNF613 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF160 113 74.0 Weakly correlated
2 ZNF471 93 94.0 Moderately correlated
3 ZNF136 19 74.0 Weakly correlated
4 ZNF490 16 43.0 Weakly correlated
5 ZIM3 15 87.0 Moderately correlated
6 ZNF793 9 99.0 Highly correlated
7 ZNF680 8 28.9 Weakly correlated
8 ZNF317 6 99.0 Highly correlated
9 ZNF263 6 180.0 Weakly correlated
10 ZNF382 3 99.0 Highly correlated
11 ZNF879 2 99.0 Highly correlated
12 ZNF354A 2 99.0 Highly correlated
13 ZNF766 2 43.0 Weakly correlated
14 ZNF75D 2 94.0 Moderately correlated
15 ZNF677 2 99.0 Highly correlated
16 ZNF28 2 28.9 Weakly correlated
17 ZFP57 2 87.0 Moderately correlated
18 ZNF528 2 43.0 Weakly correlated
19 ZNF597 2 94.0 Moderately correlated
20 ZFP28 2 99.0 Highly correlated
21 ZNF324 2 99.0 Highly correlated
22 ZNF133 2 99.0 Highly correlated
23 ZNF735 1 28.9 Weakly correlated
24 ZNF248 1 99.0 Highly correlated
25 ZNF816 1 28.9 Weakly correlated
26 ZFP90 1 99.0 Highly correlated
27 ZNF479 1 6.4 Weakly correlated
28 ZNF264 1 99.0 Highly correlated
29 ZNF705D 1 28.9 Weakly correlated
30 ZNF695 1 28.9 Weakly correlated
31 ZNF679 1 28.9 Weakly correlated
32 ZNF558 1 99.0 Highly correlated
33 ZNF780A 1 43.0 Weakly correlated
34 ZNF549 1 87.0 Moderately correlated
35 ZNF337 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated
2 ZNF471 94.0 Moderately correlated
3 ZNF490 43.0 Weakly correlated
4 ZNF680 28.9 Weakly correlated
5 ZNF793 99.0 Highly correlated