ZRdb KZFP & Repeats
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LINE_L1M3B_5END

  • Name
    L1M3B_5END
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000238
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gagtgacgtcagcaagatggcggaataggaggtctcaggctccactcccccccacagaaagtccaactagcaactatccacagacaagaacacctttgtgaaaantcccagaacttgggaatgagnctgagacacccgcgtggnccacagaaccgaataaaagccgcattagaagggtaagaggaacggtctcactttgaccgcgtcgcccctnagtcggcacagcgccacacggagaggattcccctgggcccacggtttctacagtgggaaaagagaaccggaggcggacatccagcttccctagcattccgagacgcttcccaggaagcccactccggtctcacctcacgaggaaacactgggggnaacggcacggctagaccacctggggtcaggtagaaacaaagaaaggaggcggagctcacagcgaccagcgcgcggatcttggtggtagctctgcgttcctgccagcggtggcgcccgatcagagataccagccaacggcatagcccacccgcaaagccgagctggtcgctcccagaagcacggtgggaagttcnacctggcttgagtccctagacggccagcctccangcccagcctcagagcccaccccaaggccccgcccaggcagggagacgcccaccncngcgcatttcggcaaagcgcaggggctagacctgcctgacccgggagntcaaacagcggctcngctcagcctcaaagcccaccccaaggccccacccaggcagggaggcaancctcaaccgtgcatttctacnagggcatagcgccngccgccgtccatcccnagcagcgactccacctaacctcggagcccagcgnctggccctgcccaactgcagancccaaacagcggtaccgcccggccagggaatacaccctgtggcccagcccgatagangcgatcgcagngcccagccagcggctccgcctgaccgcagagcccagccagcagccccacccgacctcagagcncaggcagcagcccggccanctagagaacccgacagcaagctctgcctgcccanggtcgctaccagctggcccgtccagaatcncaggctagactgaatagtgaaggtctntccctgccaaagaacacctgtaaaggccggaagaggtggctgtctcctcaaatgcgcagacaccaacgcaaggacacaaggattacgaagaatcagggaaacatgacaccaccaaaagaaactaataaagctccagtaacggaccctaaagaaatggagatctatgaaatgnctgacaaagaattcagaataatcctcttaaagaagttcagtgaactacaagaanatacggatagaaaattaaataaaatttggaaaacaatacatgaacaaaatgagaagttcgacaaagaaatagaaacaattannntaaaaaccaaatagaaatcctagagatgaagaatacaatgactgaactgaaaaattcaatagaaagcttcaacagcagactcgatcaagcagaagaaagaatcagtgagctcgaagacaggncatttgaaattatccagtcagaggagcaaaaagaaaaaaaatgaaaaagagtgaagaaagcctacgggaattatgggacaccatcaagngaacnaacatncgcataataggagttccagaaggagaagagaaagaaggccagaaagcatatttaaagaaataatggctgaaaacttcccaaatctggggaaagatgncaacatccaggtacaggaagcnca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF160 62 74.0 Weakly correlated
2 ZNF382 32 99.0 Highly correlated
3 ZNF471 27 94.0 Moderately correlated
4 ZNF136 22 74.0 Weakly correlated
5 ZNF92 14 28.9 Weakly correlated
6 ZIM3 14 87.0 Moderately correlated
7 ZNF679 11 28.9 Weakly correlated
8 ZNF490 10 43.0 Weakly correlated
9 ZNF331 9 94.0 Moderately correlated
10 ZNF547 7 74.0 Weakly correlated
11 ZNF274 7 99.0 Highly correlated
12 ZNF2 6 99.0 Highly correlated
13 ZNF680 5 28.9 Weakly correlated
14 ZNF394 4 99.0 Highly correlated
15 ZNF705D 4 28.9 Weakly correlated
16 ZNF705B 4 28.9 Weakly correlated
17 ZNF263 4 180.0 Weakly correlated
18 ZNF793 3 99.0 Highly correlated
19 ZNF483 3 99.0 Highly correlated
20 ZNF337 3 43.0 Weakly correlated
21 ZNF585A 3 99.0 Highly correlated
22 ZNF701 3 28.9 Weakly correlated
23 ZNF141 3 43.0 Weakly correlated
24 ZNF133 3 99.0 Highly correlated
25 ZNF554 2 99.0 Highly correlated
26 ZNF560 2 43.0 Weakly correlated
27 ZNF534 2 19.6 Weakly correlated
28 ZNF506 2 28.9 Weakly correlated
29 ZNF766 2 43.0 Weakly correlated
30 ZFP28 2 99.0 Highly correlated
31 ZNF479 2 6.4 Weakly correlated
32 ZNF251 2 94.0 Moderately correlated
33 ZNF257 2 0.0 Weakly correlated
34 ZNF287 2 99.0 Highly correlated
35 ZNF695 1 28.9 Weakly correlated
36 ZNF671 1 94.0 Moderately correlated
37 ZNF175 1 94.0 Moderately correlated
38 ZFP69 1 99.0 Highly correlated
39 ZNF101 1 43.0 Weakly correlated
40 ZNF723 1 15.2 Weakly correlated
41 ZNF735 1 28.9 Weakly correlated
42 ZNF75D 1 94.0 Moderately correlated
43 ZKSCAN8 1 160.0 Weakly correlated
44 ZNF780A 1 43.0 Weakly correlated
45 ZKSCAN5 1 160.0 Weakly correlated
46 ZNF799 1 43.0 Weakly correlated
47 ZNF879 1 99.0 Highly correlated
48 ZKSCAN1 1 160.0 Weakly correlated
49 ZNF224 1 69.0 Weakly correlated
50 ZNF248 1 99.0 Highly correlated
51 ZFP37 1 99.0 Highly correlated
52 ZNF610 1 28.9 Weakly correlated
53 ZNF589 1 28.9 Weakly correlated
54 ZNF585B 1 99.0 Highly correlated
55 ZNF264 1 99.0 Highly correlated
56 ZNF317 1 99.0 Highly correlated
57 ZNF528 1 43.0 Weakly correlated
58 ZNF320 1 28.9 Weakly correlated
59 ZNF33A 1 99.0 Highly correlated
60 ZNF485 1 94.0 Moderately correlated
61 ZFP57 1 87.0 Moderately correlated
62 ZNF41 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF160 61 74.0 Weakly correlated
2 ZNF471 22 94.0 Moderately correlated
3 ZNF136 19 74.0 Weakly correlated
4 ZIM3 11 87.0 Moderately correlated
5 ZNF490 10 43.0 Weakly correlated
6 ZNF382 6 99.0 Highly correlated
7 ZNF331 3 94.0 Moderately correlated
8 ZNF337 3 43.0 Weakly correlated
9 ZNF317 2 99.0 Highly correlated
10 ZNF585A 2 99.0 Highly correlated
11 ZNF680 2 28.9 Weakly correlated
12 ZNF610 1 28.9 Weakly correlated
13 ZNF705D 1 28.9 Weakly correlated
14 ZNF735 1 28.9 Weakly correlated
15 ZNF141 1 43.0 Weakly correlated
16 ZNF554 1 99.0 Highly correlated
17 ZNF705B 1 28.9 Weakly correlated
18 ZNF257 1 0.0 Weakly correlated
19 ZNF287 1 99.0 Highly correlated
20 ZNF766 1 43.0 Weakly correlated
21 ZNF671 1 94.0 Moderately correlated
22 ZNF483 1 99.0 Highly correlated
23 ZNF248 1 99.0 Highly correlated
24 ZFP28 1 99.0 Highly correlated
25 ZNF528 1 43.0 Weakly correlated
26 ZNF695 1 28.9 Weakly correlated
27 ZNF263 1 180.0 Weakly correlated
28 ZNF879 1 99.0 Highly correlated
29 ZNF793 1 99.0 Highly correlated
30 ZNF506 1 28.9 Weakly correlated
31 ZNF133 1 99.0 Highly correlated
32 ZNF101 1 43.0 Weakly correlated
33 ZFP69 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF471 94.0 Moderately correlated