ZRdb KZFP & Repeats
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LINE_L1M3A_5END

  • Name
    L1M3A_5END
  • Repbase
    L1M3B_5
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000237
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggagtgacatcagcaagatggcggaataggaggtcccccgctcatatccccccacagcaacaataatttggcagccatccacggacaaaagtgcctttgtgggagctttgggatccaggtaggaggttgcgaaaccccggtggagcccaagaccgaggagggccgtttgagaaggcaggcccgcgcccaggtggcaggctcgccgaccgtggtcccggctacagacccggaaacggccccgtccccctgtggactcggctacagccccatttggccttggtcctgccaccagnaccatccgccaagggacccgggaggagncacgcccacccgtgcctcnggtgacaggcccgccgacctcggtcccggctgtggaccctgaagcggcccgtgactcggctccagcccctctcagccgcggtccggagccagtcctgcccgcccagggacccgcccagtgacccggnaagagcnctcccagggacccagcgggagccacacccatccacgcacctggtaacaggcccgccatntgcagacccgactgcggatcctgaagcggccctgtaacccggctccagccctactcgaccaaggtcctggaggcagtcctgcccgcccagggacccggcgggagncacgcccatccgtgcccctggngacaggcccgccaacctcagtcccactgcggaccctgaagcagcagccatgtgacccggctccaaccccnctcgactgcgatcccagaggcaatcccatcagcccggggacccgacaggagaaggtcttcctnccgaaaccagtctgtaaagactggaagaggtgtttgctccttcaaatgcacagacaccaacgcaaggctacacggatnacgaagaatcaggcaaacatgacaccaccaaaggaaactaataaagctccagtaaccgaccccaaagaaatggagatctacgaattgcctgacaaagaattcaaaataatcatcttaaagaagctcaatgagatgcaagagaacacagatagacaactaaataaaatcaggaaaacaatgcatgaacaaaatgagaagtttaataaagaaatagaaaccataaaaaagaaccaaacagaaatcctggagctgaagaatacaatgacagaactgaaaaattcaatagagagcttcaacagcagac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF160 30 74.0 Weakly correlated
2 ZNF471 24 94.0 Moderately correlated
3 ZNF382 12 99.0 Highly correlated
4 ZIM3 11 87.0 Moderately correlated
5 ZNF92 8 28.9 Weakly correlated
6 ZNF680 8 28.9 Weakly correlated
7 ZNF136 6 74.0 Weakly correlated
8 ZNF554 5 99.0 Highly correlated
9 ZNF558 5 99.0 Highly correlated
10 ZNF317 5 99.0 Highly correlated
11 ZNF679 5 28.9 Weakly correlated
12 ZFP37 4 99.0 Highly correlated
13 ZNF766 4 43.0 Weakly correlated
14 ZNF263 4 180.0 Weakly correlated
15 ZNF479 3 6.4 Weakly correlated
16 ZNF30 3 94.0 Moderately correlated
17 ZNF534 3 19.6 Weakly correlated
18 ZNF274 3 99.0 Highly correlated
19 ZNF197 3 99.0 Highly correlated
20 ZNF175 3 94.0 Moderately correlated
21 ZNF705D 3 28.9 Weakly correlated
22 ZNF682 2 28.9 Weakly correlated
23 ZNF589 2 28.9 Weakly correlated
24 ZNF584 2 99.0 Highly correlated
25 ZNF705B 2 28.9 Weakly correlated
26 ZNF735 2 28.9 Weakly correlated
27 ZNF75D 2 94.0 Moderately correlated
28 ZNF547 2 74.0 Weakly correlated
29 ZNF485 2 94.0 Moderately correlated
30 ZKSCAN1 2 160.0 Weakly correlated
31 ZNF114 2 28.9 Weakly correlated
32 ZNF490 2 43.0 Weakly correlated
33 ZNF2 1 99.0 Highly correlated
34 ZFP57 1 87.0 Moderately correlated
35 ZNF793 1 99.0 Highly correlated
36 ZNF780A 1 43.0 Weakly correlated
37 ZKSCAN8 1 160.0 Weakly correlated
38 ZNF723 1 15.2 Weakly correlated
39 ZNF140 1 99.0 Highly correlated
40 ZNF248 1 99.0 Highly correlated
41 ZNF251 1 94.0 Moderately correlated
42 ZNF287 1 99.0 Highly correlated
43 ZNF627 1 74.0 Weakly correlated
44 ZNF613 1 99.0 Highly correlated
45 ZNF610 1 28.9 Weakly correlated
46 ZNF597 1 94.0 Moderately correlated
47 ZNF320 1 28.9 Weakly correlated
48 ZNF585A 1 99.0 Highly correlated
49 ZNF337 1 43.0 Weakly correlated
50 ZNF570 1 99.0 Highly correlated
51 ZNF425 1 94.0 Moderately correlated
52 ZNF433 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF160 28 74.0 Weakly correlated
2 ZNF471 13 94.0 Moderately correlated
3 ZIM3 8 87.0 Moderately correlated
4 ZNF136 6 74.0 Weakly correlated
5 ZNF680 3 28.9 Weakly correlated
6 ZNF382 2 99.0 Highly correlated
7 ZNF490 2 43.0 Weakly correlated
8 ZNF554 2 99.0 Highly correlated
9 ZNF485 2 94.0 Moderately correlated
10 ZNF534 2 19.6 Weakly correlated
11 ZNF735 2 28.9 Weakly correlated
12 ZNF705B 1 28.9 Weakly correlated
13 ZNF287 1 99.0 Highly correlated
14 ZNF780A 1 43.0 Weakly correlated
15 ZNF75D 1 94.0 Moderately correlated
16 ZNF433 1 43.0 Weakly correlated
17 ZNF337 1 43.0 Weakly correlated
18 ZNF248 1 99.0 Highly correlated
19 ZNF585A 1 99.0 Highly correlated
20 ZNF479 1 6.4 Weakly correlated
21 ZNF793 1 99.0 Highly correlated
22 ZNF317 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF471 94.0 Moderately correlated