ZRdb KZFP & Repeats
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LINE_L1M2_5END

  • Name
    L1M2_5END
  • Repbase
    L1M2_5
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000229
Description :

5' end of LINE elements with L1MA4A subfamily 3' ends, comprising the 5'UTR, ORF1 and part of ORF2.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
aggaggggcttcaagatggctgactagaggcatctggtactcgcctcctccacaaagaagaaccaaaatagcgagtagataatcacacttcgaatagatcatctaagagagaacactggaattcaacagagaagtgacaggaaacacctaaagcaaggaaggagagggaagcgaggcagcctgctcggccgggatcggctgggagcccggagaggctccccaatgcggggaaagggtaagtgagagacccccagcggtccacattcccaccgcggactcctgcaatcctagccacgggagagcccctcgaccctcgcgggccctgagactaacatagggagctgcctggagaccgcgcgacggcattgctccagagagggagctcacgctgggtcccacacacccccgagncctaagcagctacagcanggcgccattttgagagcccagcccccaccagactgcatcctgccctggggcccaacagcccctgcatctccacatccctggagccccactgacatcccccgcccgcagccaccgccactgctggctgctgccgccagggccgaagcgcgagccactggcagcgaccccgctgcccccagcagcggggccgccgcgcattttcacgcgccccgaggacagactcccctgcccgcagctgccaccactgcgggctgccgcggggccgaggcacgagcgaagcgcgcgctccccagccgcctgcctacggctgctgccactgaaagcaaccccgccctccccagtagcagggccgcagcgcagccgctgccgcccccacccgagcattccgccgggggcctggggatcaccccgcccctgcctaccacagccagcgcctgcacgcaccaccggggggcctgaggacaggcccgcccggcccggctccgccccccccagtgcccgagcacgccgtccgggggcctggggatcgcccagcccagtccaccaccgttggcacctgagcactcctcccgggggcctgaggncgggcccacccaacctgccgctaccaccacagctggcacccacccgcacgcgccacctgcgggcctggggactggcccgcccagcccgtcgcagccaccgccaacaccagcgcgnaccgcttggganccagagggttgtcccgccactgctactgccatcgcccacgccacgcccgctgcccaggggcccgagaacccgcccacccgcccggcccaccgctgccactaccggcacccgagcaagccacctggaggcccaagaatcggcccgcctggacccgctaacaccggtgccagcgtacgccgccctggggcccaaggacaggcacgctcggcccaccgctgccaccactggggcccgaggactggcccacctggcgtccccgtccccagcaaaacttcaccacagcctccactaacaaccgcancctaagccactgaggaaatcacagacaccactgacgctgnttacagccgaagaaatcatacggagactacactactgcacgcacccagaatcaaagccaaagcgccctacccaaccaacaccatagatacatcttcaggaaaaagtcctcccctacgaaagcnaattcaaaaaattggaagaagcgactgttacaccagatgcgcagatatcaacgtaaggacacaagaaacatgaaaaagcaaggaaatatgacacctccaaaggaacacaataattctccagcaacagatcccaatgaaaaagaaatttatgaaatnccngaaaaagaattcaaaataatgatnttaaagaagctcagtgagatacaagagaacacaganaaacaatacaaagaaatcagaaaaacaattcangatatgaatgagaaatttancaaagagatagatatcataaaaaagaaccaaacagaaatcctggaactgaagaattcantgaatgaaataaaaaatacantcgagagcttcaacaatagactagatcaagcagaagaaagaatttcngaacttgaagacaggtcttttgaaataacccagtcagacaaaaataaaaaaaaaagaataaaaaagaatgaanaaagcctacgngacatatgggacaccataaagcgancaaatattcgaattntgggngttccagaaggngaagagaaggnaaaaggnatagaaaacctatttaacgaaataatagctgaaaacttcccaagtctngcgagagatntagacatccagatacaggaagctcaaagatccccaaatagatncaacccaaaaaggtcttctccaaggcacattatagtcaaactgtcaaaagtcaaagacaaagagagaattctaaaaacagcaagagaaaagcgtcnagtcacatataagggaatccccatcagactaacagcggatttctcagcagaaaccttacaggccaggagagaatgggatgatatattcaaagtgctgaaagaaaaaaaaaactgccagccaagaatactatacccagcaaagctatccttcanaaatgaaggagaaataaagtctttcccagacaagcaaaagctgagggaattcatcaccactagaccggccctacaagaaatgcttaagggagtcctacacctggaagcgaaaggacgatatctaccatcatgaaaacacacgaaagtataaaactcactggtagagcaaacacacaaatgaggaagagaaaggantcaaatgttaccactacagaaaaccaccaaaccacaangataaacaataagagagaaagaaaggaacaaaggatatacaaaacaaccagaaaacaattaacaaaatgacaggaataagtcctcacntatcaataataaccttgaatgtaaacggattaaattctccacttaaaagatatagactggctgaatggatt
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 869 99.0 Highly correlated
2 ZNF160 344 74.0 Weakly correlated
3 ZNF136 301 74.0 Weakly correlated
4 ZIM3 194 87.0 Moderately correlated
5 ZNF490 176 43.0 Weakly correlated
6 ZNF317 156 99.0 Highly correlated
7 ZNF248 112 99.0 Highly correlated
8 ZNF92 109 28.9 Weakly correlated
9 ZNF471 106 94.0 Moderately correlated
10 ZNF680 101 28.9 Weakly correlated
11 ZNF766 88 43.0 Weakly correlated
12 ZNF263 79 180.0 Weakly correlated
13 ZNF723 79 15.2 Weakly correlated
14 ZNF679 70 28.9 Weakly correlated
15 ZNF337 67 43.0 Weakly correlated
16 ZNF793 61 99.0 Highly correlated
17 ZNF394 58 99.0 Highly correlated
18 ZNF274 46 99.0 Highly correlated
19 ZNF324 44 99.0 Highly correlated
20 ZNF251 42 94.0 Moderately correlated
21 ZNF2 42 99.0 Highly correlated
22 ZFP37 40 99.0 Highly correlated
23 ZNF705B 40 28.9 Weakly correlated
24 ZNF250 39 99.0 Highly correlated
25 ZNF18 37 160.0 Weakly correlated
26 ZNF558 36 99.0 Highly correlated
27 ZNF705D 35 28.9 Weakly correlated
28 ZNF84 31 99.0 Highly correlated
29 ZNF479 30 6.4 Weakly correlated
30 ZNF486 27 8.6 Weakly correlated
31 ZNF879 27 99.0 Highly correlated
32 ZNF182 26 99.0 Highly correlated
33 ZNF610 26 28.9 Weakly correlated
34 ZNF101 25 43.0 Weakly correlated
35 ZNF585A 25 99.0 Highly correlated
36 ZNF429 24 28.9 Weakly correlated
37 ZNF707 22 74.0 Weakly correlated
38 ZNF585B 21 99.0 Highly correlated
39 ZFP69B 20 99.0 Highly correlated
40 ZNF534 19 19.6 Weakly correlated
41 ZFP57 18 87.0 Moderately correlated
42 ZKSCAN1 18 160.0 Weakly correlated
43 ZNF547 18 74.0 Weakly correlated
44 ZNF583 18 99.0 Highly correlated
45 ZNF140 16 99.0 Highly correlated
46 ZNF257 16 0.0 Weakly correlated
47 ZNF506 16 28.9 Weakly correlated
48 ZNF589 16 28.9 Weakly correlated
49 ZFP28 14 99.0 Highly correlated
50 ZNF133 14 99.0 Highly correlated
51 ZNF554 14 99.0 Highly correlated
52 ZNF483 13 99.0 Highly correlated
53 ZNF597 13 94.0 Moderately correlated
54 ZNF75D 13 94.0 Moderately correlated
55 ZNF175 12 94.0 Moderately correlated
56 ZNF320 12 28.9 Weakly correlated
57 ZNF264 11 99.0 Highly correlated
58 ZNF735 11 28.9 Weakly correlated
59 ZNF786 11 99.0 Highly correlated
60 ZNF485 9 94.0 Moderately correlated
61 ZNF701 9 28.9 Weakly correlated
62 ZNF202 7 160.0 Weakly correlated
63 ZNF224 7 69.0 Weakly correlated
64 ZNF287 7 99.0 Highly correlated
65 ZNF519 7 19.6 Weakly correlated
66 ZNF528 7 43.0 Weakly correlated
67 ZNF563 7 28.9 Weakly correlated
68 ZNF641 7 99.0 Highly correlated
69 ZNF677 7 99.0 Highly correlated
70 ZNF8 7 99.0 Highly correlated
71 ZNF114 6 28.9 Weakly correlated
72 ZNF284 6 43.0 Weakly correlated
73 ZNF28 6 28.9 Weakly correlated
74 ZNF44 6 43.0 Weakly correlated
75 ZFP69 5 99.0 Highly correlated
76 ZNF135 5 94.0 Moderately correlated
77 ZNF197 5 99.0 Highly correlated
78 ZNF682 5 28.9 Weakly correlated
79 ZNF778 5 74.0 Weakly correlated
80 ZNF823 5 43.0 Weakly correlated
81 ZKSCAN8 4 160.0 Weakly correlated
82 ZNF273 4 28.9 Weakly correlated
83 ZNF282 4 319.0 Weakly correlated
84 ZNF30 4 94.0 Moderately correlated
85 ZNF33A 4 99.0 Highly correlated
86 ZNF41 4 99.0 Highly correlated
87 ZNF425 4 94.0 Moderately correlated
88 ZNF43 4 43.0 Weakly correlated
89 ZNF440 4 28.9 Weakly correlated
90 ZNF441 4 43.0 Weakly correlated
91 ZNF584 4 99.0 Highly correlated
92 ZNF81 4 99.0 Highly correlated
93 ZNF91 4 6.0 Weakly correlated
94 ZFP82 3 99.0 Highly correlated
95 ZNF10 3 99.0 Highly correlated
96 ZNF141 3 43.0 Weakly correlated
97 ZNF225 3 74.0 Weakly correlated
98 ZNF230 3 28.9 Weakly correlated
99 ZNF26 3 99.0 Highly correlated
100 ZNF331 3 94.0 Moderately correlated
101 ZNF334 3 99.0 Highly correlated
102 ZNF671 3 94.0 Moderately correlated
103 ZNF695 3 28.9 Weakly correlated
104 ZNF792 3 94.0 Moderately correlated
105 ZNF808 3 19.6 Weakly correlated
106 ZNF124 2 43.0 Weakly correlated
107 ZNF180 2 99.0 Highly correlated
108 ZNF184 2 99.0 Highly correlated
109 ZNF253 2 19.6 Weakly correlated
110 ZNF354A 2 99.0 Highly correlated
111 ZNF454 2 99.0 Highly correlated
112 ZNF530 2 28.9 Weakly correlated
113 ZNF549 2 87.0 Moderately correlated
114 ZNF560 2 43.0 Weakly correlated
115 ZNF567 2 99.0 Highly correlated
116 ZNF730 2 19.6 Weakly correlated
117 ZNF780A 2 43.0 Weakly correlated
118 ZNF93 2 8.6 Weakly correlated
119 ZFP30 1 99.0 Highly correlated
120 ZFP90 1 99.0 Highly correlated
121 ZKSCAN2 1 180.0 Weakly correlated
122 ZKSCAN5 1 160.0 Weakly correlated
123 ZNF100 1 28.9 Weakly correlated
124 ZNF189 1 99.0 Highly correlated
125 ZNF222 1 43.0 Weakly correlated
126 ZNF234 1 99.0 Highly correlated
127 ZNF304 1 99.0 Highly correlated
128 ZNF350 1 99.0 Highly correlated
129 ZNF420 1 94.0 Moderately correlated
130 ZNF433 1 43.0 Weakly correlated
131 ZNF468 1 28.9 Weakly correlated
132 ZNF571 1 99.0 Highly correlated
133 ZNF573 1 94.0 Moderately correlated
134 ZNF578 1 15.2 Weakly correlated
135 ZNF57 1 28.9 Weakly correlated
136 ZNF586 1 43.0 Weakly correlated
137 ZNF605 1 99.0 Highly correlated
138 ZNF616 1 43.0 Weakly correlated
139 ZNF627 1 74.0 Weakly correlated
140 ZNF649 1 28.9 Weakly correlated
141 ZNF669 1 43.0 Weakly correlated
142 ZNF674 1 99.0 Highly correlated
143 ZNF675 1 8.6 Weakly correlated
144 ZNF689 1 99.0 Highly correlated
145 ZNF716 1 19.6 Weakly correlated
146 ZNF747 1 43.0 Weakly correlated
147 ZNF75A 1 94.0 Moderately correlated
148 ZNF765 1 8.6 Weakly correlated
149 ZNF777 1 319.0 Weakly correlated
150 ZNF799 1 43.0 Weakly correlated
151 ZNF845 1 28.9 Weakly correlated
152 ZNF85 1 28.9 Weakly correlated
153 ZNF878 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF160 319 74.0 Weakly correlated
2 ZNF136 239 74.0 Weakly correlated
3 ZNF382 163 99.0 Highly correlated
4 ZNF490 158 43.0 Weakly correlated
5 ZIM3 128 87.0 Moderately correlated
6 ZNF248 100 99.0 Highly correlated
7 ZNF471 90 94.0 Moderately correlated
8 ZNF337 65 43.0 Weakly correlated
9 ZNF317 55 99.0 Highly correlated
10 ZNF723 49 15.2 Weakly correlated
11 ZNF250 39 99.0 Highly correlated
12 ZNF680 36 28.9 Weakly correlated
13 ZNF793 29 99.0 Highly correlated
14 ZNF324 26 99.0 Highly correlated
15 ZNF84 25 99.0 Highly correlated
16 ZNF879 19 99.0 Highly correlated
17 ZNF585A 19 99.0 Highly correlated
18 ZNF92 18 28.9 Weakly correlated
19 ZNF101 18 43.0 Weakly correlated
20 ZNF429 15 28.9 Weakly correlated
21 ZNF766 13 43.0 Weakly correlated
22 ZNF534 12 19.6 Weakly correlated
23 ZNF705B 11 28.9 Weakly correlated
24 ZNF263 11 180.0 Weakly correlated
25 ZNF707 10 74.0 Weakly correlated
26 ZNF705D 9 28.9 Weakly correlated
27 ZNF558 9 99.0 Highly correlated
28 ZNF140 9 99.0 Highly correlated
29 ZNF479 8 6.4 Weakly correlated
30 ZNF735 8 28.9 Weakly correlated
31 ZNF786 7 99.0 Highly correlated
32 ZNF264 7 99.0 Highly correlated
33 ZNF679 7 28.9 Weakly correlated
34 ZNF677 7 99.0 Highly correlated
35 ZFP28 6 99.0 Highly correlated
36 ZNF133 6 99.0 Highly correlated
37 ZNF485 6 94.0 Moderately correlated
38 ZNF75D 5 94.0 Moderately correlated
39 ZNF641 5 99.0 Highly correlated
40 ZFP57 5 87.0 Moderately correlated
41 ZFP69 4 99.0 Highly correlated
42 ZNF81 4 99.0 Highly correlated
43 ZNF202 4 160.0 Weakly correlated
44 ZNF251 4 94.0 Moderately correlated
45 ZNF610 4 28.9 Weakly correlated
46 ZNF287 4 99.0 Highly correlated
47 ZNF394 3 99.0 Highly correlated
48 ZNF2 3 99.0 Highly correlated
49 ZNF506 3 28.9 Weakly correlated
50 ZNF695 3 28.9 Weakly correlated
51 ZFP82 3 99.0 Highly correlated
52 ZNF44 3 43.0 Weakly correlated
53 ZNF585B 2 99.0 Highly correlated
54 ZFP37 2 99.0 Highly correlated
55 ZNF28 2 28.9 Weakly correlated
56 ZNF483 2 99.0 Highly correlated
57 ZNF563 2 28.9 Weakly correlated
58 ZNF274 2 99.0 Highly correlated
59 ZNF224 2 69.0 Weakly correlated
60 ZNF823 2 43.0 Weakly correlated
61 ZNF354A 2 99.0 Highly correlated
62 ZNF780A 2 43.0 Weakly correlated
63 ZNF530 2 28.9 Weakly correlated
64 ZNF225 2 74.0 Weakly correlated
65 ZNF597 2 94.0 Moderately correlated
66 ZNF528 2 43.0 Weakly correlated
67 ZKSCAN1 2 160.0 Weakly correlated
68 ZNF425 2 94.0 Moderately correlated
69 ZNF257 1 0.0 Weakly correlated
70 ZNF282 1 319.0 Weakly correlated
71 ZNF350 1 99.0 Highly correlated
72 ZNF468 1 28.9 Weakly correlated
73 ZNF320 1 28.9 Weakly correlated
74 ZNF701 1 28.9 Weakly correlated
75 ZFP30 1 99.0 Highly correlated
76 ZNF792 1 94.0 Moderately correlated
77 ZNF33A 1 99.0 Highly correlated
78 ZNF440 1 28.9 Weakly correlated
79 ZNF589 1 28.9 Weakly correlated
80 ZNF567 1 99.0 Highly correlated
81 ZNF486 1 8.6 Weakly correlated
82 ZNF549 1 87.0 Moderately correlated
83 ZNF10 1 99.0 Highly correlated
84 ZFP69B 1 99.0 Highly correlated
85 ZNF433 1 43.0 Weakly correlated
86 ZNF671 1 94.0 Moderately correlated
87 ZNF18 1 160.0 Weakly correlated
88 ZFP90 1 99.0 Highly correlated
89 ZNF43 1 43.0 Weakly correlated
90 ZNF8 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF136 74.0 Weakly correlated
2 ZNF248 99.0 Highly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF317 99.0 Highly correlated
5 ZNF337 43.0 Weakly correlated
6 ZNF471 94.0 Moderately correlated
7 ZNF490 43.0 Weakly correlated
8 ZNF680 28.9 Weakly correlated
9 ZNF793 99.0 Highly correlated