ZRdb KZFP & Repeats
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LINE_L1M2C_5END

  • Name
    L1M2C_5END
  • Repbase
    L1M2C_5
  • Type
    LINE
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000234
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggagagtgacgtcagcaagatggctgacntagagacgcctggcgctcgtcctccccgnnnccacaagaaaggaccaaggcaacgaataaacagctaagatttgactggagtgtcgaagggagagcgctggagtgcagcgggggagtggagacgcacctgtggtgattggaagtccaggagggcagcgtggaggcacccggcctctgcagccccgtctcccccgcccggatcggatctgcccggagtcaggagggacttcccgttgcggggaaaaggtaagcagaagatccccaccagcccccattgccaccgcaaacacctacagtccttactacaggagaatcccacagtcctcgcaagccctgagcccagtttggagagctgccgggaattcacgcagctgcattgctcccggattaggagcacaaggtgtgcactccccacccccacccaccccctgtgagccaagctgctgcagcacggcgccatcttgagaccagagccacctctggagtgcgccctgctctggggccagtagccactgcacctctccagcactggggctccatcttcattccaccaagcccacactgggtggctgaacgccacaaccccagctgcgcggagcctgggcccaggatcggctgtgactctggtcctgcacagcagggaaaccaacccccgccgcccncacttccagccggaggaacagtctggcagtcccgcccagggcgaacccgcccttgagccggccaaaccgctgcgcgccctcccccaagcgggagaggcccccgagcctccgagcagctgacactgcccccaggccggccgagcggctacgcgcccgcgcccagggcctgagaaacagccccgcggcgccaccccccgcagacangcccctggccngccnagcggccctgcgcccgcanccagggcctgagaaacagccccgcgggccgcccccggcagacacgcccccaggccggccgagcagccgtgcgcccgcgtcccgggcctgagaaacagccccgcgggccgccccggcagacacgcccccaggccggccgagcagccntgcgcccgcgtcccgggcctgagaaacagccccgtgggccgcccccggcagacacgcccccaggccagccgagcagccgtgcgcccgcgtcccgggcctgagaaacagccccgcgggccgcccccggcaggcacgcccccaggccggccgagcagccgtgtgcccgcgtcccnggccngagnaacagccccgtggccccaaccccagcgagccngnccccaagccggccgacccaccgtgtgcacgcatgcgcccccggcctgagaaacagcccggcgagcccacccccggcaaagccgcaccaccgccgccacaaactcccncagcctaggccactgaggcactcgcaaacgtcactagcgtggattacagctgaagaaactacacggagactacactactgcgtccacctagaaccaaagccaacgcaccccacccaaccgacaccccaagacccatctacangaataagtctttccctacgaaanctactccataaaattggaagaggcgactgttccaccagatgcgcaganatcaacgtagggacacannaaacatgaaaaagcaaggaaacatgacaccnccaaaggaacacaataattctccagtaacagaccccaannanaaggaaatntacgaaatgccngaaaaagaattcaaaataatnatcttaaggaaactcagtgagatacaagagaatacagatagacaattcaacgaaatcaggaaaacaattcatgatctgaatgagaaattcaacaaagagatagatatcataaaaaagaaccaaacagaaatcctggagctgaagaattcaatgaatgaaataaaaaatacaatcgagagcttcaacaacagactagatcaagcagaagaaagaatttctgaacttgaagacaggtcttttgaaataacncagncaganaaaagaaaaaaaaagaatgaagaaagcctacgggacttatgggacaccattaagcgaacaaatattcgcattatgggngttccagaagagaagggaaaaggcgnagaaaacntatttaatgaaataatagctgaaaacttcccaagtcttgggagaganatggacatccagatccaggaagctcaaaganccccaaatagattcaacccaaanaggtcctctccgaggcacattatnagtcaaattgtcaaaagtcaaagacaaagaattctaaaagcagcaagagaaaagcgtcaagtcacatataagggaatccccattagactaacaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF160 49 74.0 Moderately correlated
2 ZNF382 42 99.0 Weakly correlated
3 ZNF136 26 74.0 Moderately correlated
4 ZNF793 21 99.0 Weakly correlated
5 ZNF471 21 94.0 Weakly correlated
6 ZNF317 18 99.0 Weakly correlated
7 ZNF490 16 43.0 Weakly correlated
8 ZIM3 14 87.0 Highly correlated
9 ZNF92 13 28.9 Weakly correlated
10 ZNF263 13 180.0 Weakly correlated
11 ZNF679 12 28.9 Weakly correlated
12 ZNF766 11 43.0 Weakly correlated
13 ZNF394 7 99.0 Weakly correlated
14 ZNF723 6 15.2 Weakly correlated
15 ZNF479 6 6.4 Weakly correlated
16 ZNF705B 6 28.9 Weakly correlated
17 ZNF274 5 99.0 Weakly correlated
18 ZNF680 5 28.9 Weakly correlated
19 ZNF589 4 28.9 Weakly correlated
20 ZNF2 4 99.0 Weakly correlated
21 ZFP37 4 99.0 Weakly correlated
22 ZFP69B 3 99.0 Weakly correlated
23 ZNF337 3 43.0 Weakly correlated
24 ZNF324 3 99.0 Weakly correlated
25 ZNF558 3 99.0 Weakly correlated
26 ZNF584 3 99.0 Weakly correlated
27 ZNF141 3 43.0 Weakly correlated
28 ZNF879 3 99.0 Weakly correlated
29 ZNF253 3 19.6 Weakly correlated
30 ZNF182 3 99.0 Weakly correlated
31 ZNF707 2 74.0 Moderately correlated
32 ZNF585A 2 99.0 Weakly correlated
33 ZNF140 2 99.0 Weakly correlated
34 ZNF610 2 28.9 Weakly correlated
35 ZNF665 2 28.9 Weakly correlated
36 ZNF701 2 28.9 Weakly correlated
37 ZNF483 2 99.0 Weakly correlated
38 ZNF18 2 160.0 Weakly correlated
39 ZNF75D 2 94.0 Weakly correlated
40 ZNF705D 2 28.9 Weakly correlated
41 ZNF257 2 0.0 Weakly correlated
42 ZNF334 2 99.0 Weakly correlated
43 ZNF287 2 99.0 Weakly correlated
44 ZNF786 1 99.0 Weakly correlated
45 ZNF84 1 99.0 Weakly correlated
46 ZNF671 1 94.0 Weakly correlated
47 ZNF641 1 99.0 Weakly correlated
48 ZNF735 1 28.9 Weakly correlated
49 ZNF597 1 94.0 Weakly correlated
50 ZFP1 1 99.0 Weakly correlated
51 ZFP90 1 99.0 Weakly correlated
52 ZNF114 1 28.9 Weakly correlated
53 ZNF175 1 94.0 Weakly correlated
54 ZNF17 1 69.0 Weakly correlated
55 ZNF197 1 99.0 Weakly correlated
56 ZNF222 1 43.0 Weakly correlated
57 ZNF250 1 99.0 Weakly correlated
58 ZNF251 1 94.0 Weakly correlated
59 ZKSCAN1 1 160.0 Weakly correlated
60 ZNF284 1 43.0 Weakly correlated
61 ZNF585B 1 99.0 Weakly correlated
62 ZNF33A 1 99.0 Weakly correlated
63 ZFP82 1 99.0 Weakly correlated
64 ZFP57 1 87.0 Highly correlated
65 ZNF506 1 28.9 Weakly correlated
66 ZNF530 1 28.9 Weakly correlated
67 ZNF534 1 19.6 Weakly correlated
68 ZNF560 1 43.0 Weakly correlated
69 ZNF570 1 99.0 Weakly correlated
70 ZNF57 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF160 45 74.0 Moderately correlated
2 ZNF136 20 74.0 Moderately correlated
3 ZNF471 18 94.0 Weakly correlated
4 ZNF490 15 43.0 Weakly correlated
5 ZNF382 10 99.0 Weakly correlated
6 ZNF793 9 99.0 Weakly correlated
7 ZNF317 9 99.0 Weakly correlated
8 ZIM3 4 87.0 Highly correlated
9 ZNF337 3 43.0 Weakly correlated
10 ZNF679 3 28.9 Weakly correlated
11 ZNF263 3 180.0 Weakly correlated
12 ZNF879 2 99.0 Weakly correlated
13 ZNF680 2 28.9 Weakly correlated
14 ZNF585A 2 99.0 Weakly correlated
15 ZNF479 2 6.4 Weakly correlated
16 ZNF766 2 43.0 Weakly correlated
17 ZNF671 1 94.0 Weakly correlated
18 ZFP57 1 87.0 Highly correlated
19 ZNF75D 1 94.0 Weakly correlated
20 ZNF250 1 99.0 Weakly correlated
21 ZFP82 1 99.0 Weakly correlated
22 ZNF287 1 99.0 Weakly correlated
23 ZNF274 1 99.0 Weakly correlated
24 ZFP90 1 99.0 Weakly correlated
25 ZNF257 1 0.0 Weakly correlated
26 ZNF84 1 99.0 Weakly correlated
27 ZNF707 1 74.0 Moderately correlated
28 ZNF735 1 28.9 Weakly correlated
29 ZNF723 1 15.2 Weakly correlated
30 ZNF324 1 99.0 Weakly correlated
31 ZNF141 1 43.0 Weakly correlated
32 ZNF584 1 99.0 Weakly correlated
33 ZFP1 1 99.0 Weakly correlated
34 ZNF701 1 28.9 Weakly correlated
35 ZNF786 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF317 99.0 Weakly correlated
2 ZNF382 99.0 Weakly correlated
3 ZNF471 94.0 Weakly correlated
4 ZNF793 99.0 Weakly correlated