ZRdb KZFP & Repeats
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LINE_L1M2B_5END

  • Name
    L1M2B_5END
  • Repbase
    L1M2B_5
  • Type
    LINE
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000233
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tagaggcacccggcactcgcctcctccacaaagaaggaccaaaacagcgagtagataaccacacntcgaatagagcgtctaagagagaacactggaattcagcagggaagtgacagggaacntctgaggcacggaaggagagggaagcgaagcagccggcccggccgggatcggctcggagccaggagggactccccantgcggggaaaaggtaagcgagagatccccagcggtccacattcccaccgcggacncctgcaatcctagccacgggagagcccctcggccctcgcgggccctgagactagtatagggagctgcctggagtccacgcgacggcattgctccagagagggagttcacgctgggtcccacacaccccccgagacccaagcagctgcagcacggcgccattttgagagcccagcccccaccagactgcatcctgccctggggcccaacagcccctgcatctccacatccctggagccccgctgacatccccccacgtccacccagnagggctgcagcgtcgcgacgccggctggacccagcggtgcggccgggtccccagcactctagcccacgcagcgtcctacaccccggggaacgggcggtgcagcgcaccagggaggctgcccctccgccccccgccccccgcccgnnnnaggacaaagggagccaaagggagccaaagcatgcgctccccagagcctgagagccgcctgcctggggccgctgccactgacagcaaccccgccccctccagcagcagggccgccgcgcacctgcacgcgccctgaggacaggctctccctacccactgccgctgccagtgcaaagcgcatgctccccagagcctgaggaccacctgcctggggctgctgccactgacagcaaccctgccccancnctgnccccagcagcagctgctgtacacntgcacgggccctgaggacaggcttnccccgcccactgccaccgcnnctgacnccggggccaaagcacatgctccccagagcctgagagctgcctgcctgggctgctgccactgacagcaaccctgcccccacccccagcagcagggccgctgtgcacctgcatgcgccctgaggacaggctgccctncccaccactgctgctgccacccngacccaagcactgccatccgggggcctggggatcgncccgccccgcccaccacagccggcgcccatgcgcaccaccaggggggcctgaggacaggcccgcccggcctgccaccaccaccagtgcccgagcacgccgtccgggggcctggggatcgccccgccccgcccaccaccgctggcgcccgtgcacnccncccgggggcctgaggacgggcccacccagcctgccgccaccaccgccgctggcacccacccgcacgtgccacctgggggcctggggactggcccgcccagcccgccgcagccaccgctagcaccagcgcgtgccgcccgggggcccgagggttggcccgccaccgctactgccaccgcccacgccacgcacgccgcccaggggcccgaggacccgcccacccgnccggcccaccgctgccactgccggcacccgagcaagccgcctggaggcccaaggaccggcccgcccggacccgccaccaccggtgcccgcgcatgccgcccgggggcccgaggacaggcacgcccggcccgccgctgccaccactggggcccgaggaccggcccgcctggcgtccccgtccccagcaaagcctcaccacagcctccactaacaaccgcagcctaagccactgaggaantcacagacaccactgacgctgattnacagccgaagaaatcatacggagactacactactgcgcncacccagaatcaaagccaaagcgccctacccaaccaacactatagatacatctacaggaaaaaagtctttccctacgaaagccaatccanaaaattggaagaagcgactgttacaccagatgcgcagatatcaacgtaaggacacaagaagacacaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 17 99.0 Weakly correlated
2 ZNF274 12 99.0 Weakly correlated
3 ZNF679 7 28.9 Weakly correlated
4 ZNF263 7 180.0 Weakly correlated
5 ZIM3 6 87.0 Highly correlated
6 ZNF490 6 43.0 Weakly correlated
7 ZNF793 4 99.0 Weakly correlated
8 ZNF589 4 28.9 Weakly correlated
9 ZNF136 4 74.0 Moderately correlated
10 ZNF680 3 28.9 Weakly correlated
11 ZNF114 3 28.9 Weakly correlated
12 ZNF2 3 99.0 Weakly correlated
13 ZNF248 2 99.0 Weakly correlated
14 ZFP37 2 99.0 Weakly correlated
15 ZNF75D 2 94.0 Weakly correlated
16 ZNF558 2 99.0 Weakly correlated
17 ZNF483 2 99.0 Weakly correlated
18 ZNF479 2 6.4 Weakly correlated
19 ZNF324 2 99.0 Weakly correlated
20 ZNF471 1 94.0 Weakly correlated
21 ZNF160 1 74.0 Moderately correlated
22 ZNF534 1 19.6 Weakly correlated
23 ZNF547 1 74.0 Moderately correlated
24 ZNF57 1 28.9 Weakly correlated
25 ZNF124 1 43.0 Weakly correlated
26 ZNF610 1 28.9 Weakly correlated
27 ZNF182 1 99.0 Weakly correlated
28 ZNF273 1 28.9 Weakly correlated
29 ZNF747 1 43.0 Weakly correlated
30 ZNF222 1 43.0 Weakly correlated
31 ZNF766 1 43.0 Weakly correlated
32 ZNF780A 1 43.0 Weakly correlated
33 ZNF224 1 69.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF490 6 43.0 Weakly correlated
2 ZNF382 3 99.0 Weakly correlated
3 ZNF136 2 74.0 Moderately correlated
4 ZNF558 2 99.0 Weakly correlated
5 ZNF793 2 99.0 Weakly correlated
6 ZNF75D 1 94.0 Weakly correlated
7 ZNF471 1 94.0 Weakly correlated
8 ZNF534 1 19.6 Weakly correlated
9 ZNF160 1 74.0 Moderately correlated
10 ZNF680 1 28.9 Weakly correlated
11 ZNF263 1 180.0 Weakly correlated
12 ZFP37 1 99.0 Weakly correlated
13 ZNF479 1 6.4 Weakly correlated
14 ZNF780A 1 43.0 Weakly correlated
15 ZNF248 1 99.0 Weakly correlated
16 ZNF274 1 99.0 Weakly correlated
17 ZIM3 1 87.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats