ZRdb KZFP & Repeats
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LINE_L1M2A_5END

  • Name
    L1M2A_5END
  • Repbase
    L1M2A_5
  • Type
    LINE
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000232
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gagagtgacgtcagcaagatggccgactagaagcccctagcgctcgtccccctcacaaagacagccaaaacaacgaataaacaactacattttgacgaaaataactaaaggagagcgccggagtacancaaaggagtagcagaaaccctgnngagcacagaaactcaggatggccacatagagaanggaaggaaacacctngcctccgccaccccatcccccagccgggatcagctcggaaccaggagggacttctccctgcggggaaaaggtaagcaagaggaccccagcagcccccatcancaccntggacacctacagtcctcgccactggggncccctgcagtcctcacaggcactaagcccagctgagggagctgcctggagtccacacagctgcgctccccccagagaaggagccgacactgtgccccgccccctgtggcccgcgcggctactgcgctgcgccatcttggaaccggaaccactgctggagtgtgtcctgctccgggggcgagtagccaccgcaccccttcatccctgaggctnagccgccgctgaaccacccccgcccggtggcccgncatccccgagccgagctgcgagcagctgttacaccctnccccgtggggccaagcngcggcggagccgctccacctacccctcccagtgctgctgcaccctgccccctcgggccngagctgaagcggcgccctgcctcccggggaaacggtgccttggccgcccagagcagtcacgcctccccggtgcctaagctgaagcagcgccctgcntcccaggaaacggtgccttggccacccagagcagtcacgccccccaggcctgagctgaagcggcacaccgccccccggggaatcggtgccttggccgagccgagcagctgcgcatcccagggctgagctgacgtagtaccccgcgtcccagggaaacagagcantggctgagctgagacaccccgccctacaggccaaacaactctagtaccctgcttccctggagctggactagccccctagagtctgagctgctgagacacccccctccccggggagtggagtcatcgctgtgctgctccctgccccccgcagggcccaagcgacagctgtgctccgccattccggggtccttgctgccgctgcacctggcctcacagagtctgggatactgccgngccccaccatcccagggtccagagtcaccactacgcggtgcctcatcccccgggacccgagttgccactgngccctattggctcnggttcccgaattgcagccgtaccctgctccccgggcccaaacctccagagcaccccttcttccccggagccgggccagtgctgtgccctgccccccagggncagaatcacagctacaacccggccccctgggcccgagctgctagggggtgcctcagagtcacagatcctggctctgtgggcganctacatccaaccctgccncagagagcgaacctgcaccccaagacccaggtgccacaataggttcgcgagaccctgagcctaggaccccggctccacagccgctccgagcacctgcgcctggaacccagcgccgctgcggctgcttgtaggccatgtcagacccgacaccaagagggatcccctcggctaagnctccccattgtggggaaaacgagaacaggaggaccccaaaagcccttgccaccgaggaccctaacaacctacgctgccaccgccgctgccacaaacttctacagcctaggccactgaggcacccgcagtcatcgccgacgttgancncagctgaagaagctgcacggagactataccactgcacctacccggaancagagccaccgcaccctncccaaccggcacnctnagacccanctgcaggtgaaagtctttccctacgaaagccactctataaagtttggaagaggtgactgctccaccagatgcgcagacatcaacgcagggacacaagaaacatgaaaaagcaaggaaacatgacaccaccaaaggaacacaataattctccagtaacngaccccaaagaaanggaaatctacgaattgcctgaaaaggaattcaaaataatnatcttaaggaaactcagcgagatacaagagaatacagatagacaattcaacgaaatcaggaaaacaattcatgatntgaatgagaaattcaacaaagagataganatcataaaaaagaaccaaacagaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 74 99.0 Weakly correlated
2 ZNF471 44 94.0 Weakly correlated
3 ZNF136 42 74.0 Moderately correlated
4 ZIM3 41 87.0 Highly correlated
5 ZNF317 30 99.0 Weakly correlated
6 ZNF160 29 74.0 Moderately correlated
7 ZNF263 23 180.0 Weakly correlated
8 ZNF490 16 43.0 Weakly correlated
9 ZNF679 13 28.9 Weakly correlated
10 ZNF680 13 28.9 Weakly correlated
11 ZNF274 9 99.0 Weakly correlated
12 ZNF92 8 28.9 Weakly correlated
13 ZKSCAN1 7 160.0 Weakly correlated
14 ZNF766 6 43.0 Weakly correlated
15 ZNF585B 5 99.0 Weakly correlated
16 ZNF479 5 6.4 Weakly correlated
17 ZNF394 5 99.0 Weakly correlated
18 ZNF337 5 43.0 Weakly correlated
19 ZNF793 5 99.0 Weakly correlated
20 ZNF28 5 28.9 Weakly correlated
21 ZNF248 5 99.0 Weakly correlated
22 ZFP37 4 99.0 Weakly correlated
23 ZNF723 4 15.2 Weakly correlated
24 ZNF2 4 99.0 Weakly correlated
25 ZNF534 4 19.6 Weakly correlated
26 ZNF506 4 28.9 Weakly correlated
27 ZNF253 3 19.6 Weakly correlated
28 ZNF823 3 43.0 Weakly correlated
29 ZNF75D 3 94.0 Weakly correlated
30 ZNF705B 3 28.9 Weakly correlated
31 ZNF559 3 74.0 Moderately correlated
32 ZNF175 3 94.0 Weakly correlated
33 ZNF44 3 43.0 Weakly correlated
34 ZNF251 3 94.0 Weakly correlated
35 ZNF257 3 0.0 Weakly correlated
36 ZNF18 3 160.0 Weakly correlated
37 ZNF182 2 99.0 Weakly correlated
38 ZNF84 2 99.0 Weakly correlated
39 ZNF786 2 99.0 Weakly correlated
40 ZNF705D 2 28.9 Weakly correlated
41 ZNF610 2 28.9 Weakly correlated
42 ZNF230 2 28.9 Weakly correlated
43 ZNF558 2 99.0 Weakly correlated
44 ZNF549 2 87.0 Highly correlated
45 ZNF30 2 94.0 Weakly correlated
46 ZNF197 2 99.0 Weakly correlated
47 ZNF485 2 94.0 Weakly correlated
48 ZFP28 2 99.0 Weakly correlated
49 ZNF17 2 69.0 Weakly correlated
50 ZNF324 2 99.0 Weakly correlated
51 ZNF792 1 94.0 Weakly correlated
52 ZNF707 1 74.0 Moderately correlated
53 ZNF26 1 99.0 Weakly correlated
54 ZNF735 1 28.9 Weakly correlated
55 ZNF250 1 99.0 Weakly correlated
56 ZNF765 1 8.6 Weakly correlated
57 ZKSCAN5 1 160.0 Weakly correlated
58 ZNF43 1 43.0 Weakly correlated
59 ZNF791 1 87.0 Highly correlated
60 ZNF273 1 28.9 Weakly correlated
61 ZFP69B 1 99.0 Weakly correlated
62 ZNF425 1 94.0 Weakly correlated
63 ZNF85 1 28.9 Weakly correlated
64 ZNF879 1 99.0 Weakly correlated
65 ZNF8 1 99.0 Weakly correlated
66 ZNF33A 1 99.0 Weakly correlated
67 ZNF441 1 43.0 Weakly correlated
68 ZNF154 1 94.0 Weakly correlated
69 ZNF701 1 28.9 Weakly correlated
70 ZNF114 1 28.9 Weakly correlated
71 ZNF135 1 94.0 Weakly correlated
72 ZNF616 1 43.0 Weakly correlated
73 ZNF605 1 99.0 Weakly correlated
74 ZNF589 1 28.9 Weakly correlated
75 ZNF586 1 43.0 Weakly correlated
76 ZNF140 1 99.0 Weakly correlated
77 ZNF584 1 99.0 Weakly correlated
78 ZNF583 1 99.0 Weakly correlated
79 ZNF483 1 99.0 Weakly correlated
80 ZNF554 1 99.0 Weakly correlated
81 ZNF486 1 8.6 Weakly correlated
82 ZNF528 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF471 39 94.0 Weakly correlated
2 ZNF136 29 74.0 Moderately correlated
3 ZNF160 27 74.0 Moderately correlated
4 ZIM3 26 87.0 Highly correlated
5 ZNF490 14 43.0 Weakly correlated
6 ZNF317 8 99.0 Weakly correlated
7 ZNF382 7 99.0 Weakly correlated
8 ZNF248 5 99.0 Weakly correlated
9 ZNF263 4 180.0 Weakly correlated
10 ZNF679 4 28.9 Weakly correlated
11 ZNF680 4 28.9 Weakly correlated
12 ZNF337 4 43.0 Weakly correlated
13 ZNF723 3 15.2 Weakly correlated
14 ZNF534 3 19.6 Weakly correlated
15 ZNF28 3 28.9 Weakly correlated
16 ZNF506 2 28.9 Weakly correlated
17 ZNF479 2 6.4 Weakly correlated
18 ZNF793 2 99.0 Weakly correlated
19 ZNF75D 2 94.0 Weakly correlated
20 ZNF26 1 99.0 Weakly correlated
21 ZNF616 1 43.0 Weakly correlated
22 ZNF483 1 99.0 Weakly correlated
23 ZNF528 1 43.0 Weakly correlated
24 ZNF230 1 28.9 Weakly correlated
25 ZFP28 1 99.0 Weakly correlated
26 ZNF33A 1 99.0 Weakly correlated
27 ZNF707 1 74.0 Moderately correlated
28 ZNF735 1 28.9 Weakly correlated
29 ZNF30 1 94.0 Weakly correlated
30 ZNF792 1 94.0 Weakly correlated
31 ZNF585B 1 99.0 Weakly correlated
32 ZNF554 1 99.0 Weakly correlated
33 ZNF251 1 94.0 Weakly correlated
34 ZNF250 1 99.0 Weakly correlated
35 ZNF823 1 43.0 Weakly correlated
36 ZNF257 1 0.0 Weakly correlated
37 ZNF558 1 99.0 Weakly correlated
38 ZNF44 1 43.0 Weakly correlated
39 ZNF154 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF471 94.0 Weakly correlated