ZRdb KZFP & Repeats
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LINE_L1M2A1_5END

  • Name
    L1M2A1_5END
  • Repbase
    L1M2A1_5
  • Type
    LINE
  • Emergence
    79.0 Mya
  • Dfam Id
    DF0000230
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
atcaagatggctgactagacgcaggtagtatgtgcctcctccacggagaggaaccagaatagtnaagtagatactcacatttcgaacagatcgtctaggagagaacgctaggattcaccagagaagagacgggaagcaccagaagtaagtaaggagagggttcgaggcagcttgcccagccgggaactgactgagagccgggagaggctcctggacgcggggaaacagtaagagagaaacccccagggctccacgntncgaaacgggcttttacgatcttggctacgggagaaaccctcgacccactagggcctcgggcctgacatacggagctgcctaaagattgcacagagacgttgctccagaaagggaacccacacggaatcccacaggcatccgagcctggagcagcctcagctgggcgccattttgagagcctagataccggggatctacagacacggctgcngccgctgcgctgctccaaggagggagaggggagaccgggcgctcccacgcacccctgggagggtccctgccgccctgctgcgggctgctgtgagactgagacgtgagcggaccgcactccccacagcttcttgcccacgctgcttgcctgggaggggccccgccctctctggntcccaggcccaaggcgnncgccattttgagagtttaacgctgggctgcgccccgccctcggnctgagttcgggctgacgcggctgcagccgccgcccggccaaggagggacagggaaaccaggctctcctacgcatatctaggacaatacccactgccctgcaacgggctgctgtgagactgagacgcgagcggaccgcactccccacagcttcttgcccacgctgcttgcctgggaggggccccgccctccctggtcgcaggcccaaggcgccattttgagagtttaacgctgggctgcgccccgccctcgggccgagttcgagttgacgtggctgcagccgccgcccggccaaggagggacagggaaaccaggctctcctacgcatacctaggacaatacccaccgccctgctacgggctgctgtgagaccgagactcgagcggaccgcactccccacagcttcttgcccatgctgctcgcctgagaggggcccccgccctctctggtcacaagcccacagctggcaccattttgagagtttaacgctgggctgtgccccaccctcgggccgagttcgaggtgacgcggctgcagccgccacccagccgggggagggacaggggagaccaagctctcctaagcacacttaggacaatacccaccgccctgctacgggcggctgtgggactggggactagcccgcccaacccatcgcagcttccagcaacaccaacacggaccgcttgggtcccagtgggttgctccaccaccgctactgccatcacccacaccacaccagctgcccaggggcctgagaacccgcccacacacctggcccaccgctcccactactagcttctaagcaagccacctggaggcccaagaatcagccctccaggacccactaacaccggagccagtgtaagctgctctggggcctaaaaacaggcacactcaccccactgctgccaccaccggggcccgaagactggctcagttggcgtccaagtccccagcaaaacttcaccacaacctcaactaataactgtaccctaagccaccgaggaaatcacagataccactgaccctgtgtactgccgaagaagtcatacaaagatcacactaccgcaggcacccaaaatcaaagccaaagtatcctanctcaaccaacaacatacatacatcttcaggaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF160 12 74.0 Moderately correlated
2 ZNF317 11 99.0 Weakly correlated
3 ZNF382 8 99.0 Weakly correlated
4 ZNF92 5 28.9 Weakly correlated
5 ZNF534 5 19.6 Weakly correlated
6 ZNF136 4 74.0 Moderately correlated
7 ZNF263 4 180.0 Weakly correlated
8 ZNF274 4 99.0 Weakly correlated
9 ZNF490 3 43.0 Weakly correlated
10 ZNF705D 3 28.9 Weakly correlated
11 ZNF705B 3 28.9 Weakly correlated
12 ZNF337 3 43.0 Weakly correlated
13 ZNF793 2 99.0 Weakly correlated
14 ZFP57 2 87.0 Weakly correlated
15 ZNF519 2 19.6 Weakly correlated
16 ZNF320 2 28.9 Weakly correlated
17 ZNF680 1 28.9 Weakly correlated
18 ZIM3 1 87.0 Weakly correlated
19 ZNF780A 1 43.0 Weakly correlated
20 ZNF766 1 43.0 Weakly correlated
21 ZNF765 1 8.6 Weakly correlated
22 ZNF75D 1 94.0 Weakly correlated
23 ZNF707 1 74.0 Moderately correlated
24 ZNF114 1 28.9 Weakly correlated
25 ZNF248 1 99.0 Weakly correlated
26 ZNF679 1 28.9 Weakly correlated
27 ZNF597 1 94.0 Weakly correlated
28 ZNF577 1 94.0 Weakly correlated
29 ZNF287 1 99.0 Weakly correlated
30 ZNF479 1 6.4 Weakly correlated
31 ZNF429 1 28.9 Weakly correlated
32 ZNF28 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF160 11 74.0 Moderately correlated
2 ZNF136 4 74.0 Moderately correlated
3 ZNF534 4 19.6 Weakly correlated
4 ZNF317 4 99.0 Weakly correlated
5 ZNF490 3 43.0 Weakly correlated
6 ZNF382 3 99.0 Weakly correlated
7 ZNF337 3 43.0 Weakly correlated
8 ZNF263 2 180.0 Weakly correlated
9 ZNF274 2 99.0 Weakly correlated
10 ZNF519 2 19.6 Weakly correlated
11 ZNF287 1 99.0 Weakly correlated
12 ZIM3 1 87.0 Weakly correlated
13 ZNF248 1 99.0 Weakly correlated
14 ZNF75D 1 94.0 Weakly correlated
15 ZNF780A 1 43.0 Weakly correlated
16 ZNF597 1 94.0 Weakly correlated
17 ZNF429 1 28.9 Weakly correlated
18 ZNF28 1 28.9 Weakly correlated
19 ZNF680 1 28.9 Weakly correlated
20 ZNF793 1 99.0 Weakly correlated
21 ZNF705B 1 28.9 Weakly correlated
22 ZNF320 1 28.9 Weakly correlated
23 ZNF707 1 74.0 Moderately correlated
24 ZNF705D 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats